assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741885.1_ASM274188v1	NZ_CP024165	Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 chromosome, complete genome	1	1037616-1038803	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTNTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|381aa|up_9|NZ_CP024165.1_1023413_1024556_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP024165.1_1024599_1027356_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP024165.1_1027413_1028709_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP024165.1_1028760_1030995_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP024165.1_1031079_1031436_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP024165.1_1031401_1031698_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP024165.1_1032465_1033266_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP024165.1_1033493_1035131_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP024165.1_1035213_1036512_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP024165.1_1036647_1037319_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP024165.1_1038900_1039698_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP024165.1_1039785_1040148_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP024165.1_1040583_1042383_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP024165.1_1042382_1044095_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP024165.1_1044170_1044905_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP024165.1_1044992_1045946_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP024165.1_1046329_1049029_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP024165.1_1049590_1051126_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP024165.1_1051142_1051745_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP024165.1_1051767_1052826_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_002741885.1_ASM274188v1	NZ_CP024165	Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 chromosome, complete genome	2	1055563-1056872	2,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	21,21	21	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP024165.1_1044170_1044905_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP024165.1_1044992_1045946_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP024165.1_1046329_1049029_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP024165.1_1049590_1051126_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP024165.1_1051142_1051745_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP024165.1_1051767_1052826_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP024165.1_1052835_1053561_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|236aa|up_2|NZ_CP024165.1_1053560_1054268_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP024165.1_1054264_1055182_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|97aa|up_0|NZ_CP024165.1_1055184_1055475_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP024165.1_1056886_1057933_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024165.1_1058183_1059092_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP024165.1_1059101_1060541_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024165.1_1060527_1061133_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024165.1_1061183_1061507_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024165.1_1061697_1062009_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024165.1_1062027_1062738_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024165.1_1062737_1063217_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024165.1_1063213_1064263_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024165.1_1064243_1065005_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002741885.1_ASM274188v1	NZ_CP024165	Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 chromosome, complete genome	3	4782022-4782161	2	PILER-CR	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|157aa|up_9|NZ_CP024165.1_4769523_4769994_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|178aa|up_8|NZ_CP024165.1_4770008_4770542_+	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|514aa|up_7|NZ_CP024165.1_4770554_4772096_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|288aa|up_6|NZ_CP024165.1_4772146_4773010_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|461aa|up_5|NZ_CP024165.1_4773036_4774419_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|140aa|up_4|NZ_CP024165.1_4774439_4774859_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|457aa|up_3|NZ_CP024165.1_4776107_4777478_+	PRK09451, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|610aa|up_2|NZ_CP024165.1_4777666_4779496_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|239aa|up_1|NZ_CP024165.1_4779794_4780511_-	pfam01353, GFP, Green fluorescent protein	NA|220aa|up_0|NZ_CP024165.1_4781163_4781823_+	PRK13757, PRK13757, type A chloramphenicol O-acetyltransferase	NA|586aa|down_0|NZ_CP024165.1_4782298_4784056_-	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|273aa|down_1|NZ_CP024165.1_4784150_4784969_+	PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed	NA|458aa|down_2|NZ_CP024165.1_4785018_4786392_+	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|347aa|down_3|NZ_CP024165.1_4786557_4787598_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|320aa|down_4|NZ_CP024165.1_4787733_4788693_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|297aa|down_5|NZ_CP024165.1_4788692_4789583_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|258aa|down_6|NZ_CP024165.1_4789669_4790443_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|242aa|down_7|NZ_CP024165.1_4790457_4791183_+	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|222aa|down_8|NZ_CP024165.1_4791277_4791943_-	PRK10563, PRK10563, 6-phosphogluconate phosphatase; Provisional	NA|446aa|down_9|NZ_CP024165.1_4792111_4793449_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
GCF_002741885.1_ASM274188v1	NZ_CP024167	Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 plasmid pCFSAN024441_02, complete sequence	1	13720-13816	1	CRISPRCasFinder	no			Orphan	AAAAAAAAAAAAAAAAAAAAAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|214aa|up_1|NZ_CP024167.1_11512_12154_+,NA|103aa|down_0|NZ_CP024167.1_14759_15068_-,NA|94aa|down_1|NZ_CP024167.1_15568_15850_+,NA|155aa|down_8|NZ_CP024167.1_20897_21362_-	NA|139aa|up_9|NZ_CP024167.1_4237_4654_-	pfam09677, TrbI_Ftype, Type-F conjugative transfer system protein (TrbI_Ftype)	NA|868aa|up_8|NZ_CP024167.1_4650_7254_-	PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC; Provisional	NA|186aa|up_7|NZ_CP024167.1_7250_7808_-	PRK13733, PRK13733, conjugal transfer protein TraV; Provisional	NA|470aa|up_6|NZ_CP024167.1_7907_9317_-	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional	NA|247aa|up_5|NZ_CP024167.1_9313_10054_-	PRK13736, PRK13736, conjugal transfer protein TraK; Provisional	NA|195aa|up_4|NZ_CP024167.1_10065_10650_-	pfam05309, TraE, TraE protein	NA|101aa|up_3|NZ_CP024167.1_10654_10957_-	PRK13707, PRK13707, type IV conjugative transfer system protein TraL	NA|118aa|up_2|NZ_CP024167.1_10962_11316_-	pfam05513, TraA, TraA	NA|214aa|up_1|NZ_CP024167.1_11512_12154_+	NA	NA|131aa|up_0|NZ_CP024167.1_12186_12579_-	cd14804, Tra_M, TraM mediates signalling between transferosome and relaxosome	NA|103aa|down_0|NZ_CP024167.1_14759_15068_-	NA	NA|94aa|down_1|NZ_CP024167.1_15568_15850_+	NA	NA|53aa|down_2|NZ_CP024167.1_16058_16217_-	pfam01848, HOK_GEF, Hok/gef family	NA|241aa|down_3|NZ_CP024167.1_16395_17118_-	PRK13704, PRK13704, plasmid SOS inhibition protein A; Provisional	NA|134aa|down_4|NZ_CP024167.1_17114_17516_-	pfam06290, PsiB, Plasmid SOS inhibition protein (PsiB)	NA|692aa|down_5|NZ_CP024167.1_17552_19628_-	cd16406, ParB_N_like, ParB N-terminal, parA-binding, -like domain of bacterial and plasmid parABS partitioning systems	NA|76aa|down_6|NZ_CP024167.1_19703_19931_-	pfam06006, DUF905, Bacterial protein of unknown function (DUF905)	NA|175aa|down_7|NZ_CP024167.1_19980_20505_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|155aa|down_8|NZ_CP024167.1_20897_21362_-	NA	NA|177aa|down_9|NZ_CP024167.1_21358_21889_-	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)
