The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	5522075	664224	672408	5522075		Mycobacterium_phage(33.33%)	9	NA	NA
WP_010595079.1|664224_665022_+	Fe-S cluster assembly ATPase SufC	NA	W8CYL7	Bacillus_phage	27.7	3.2e-07
WP_010595078.1|665036_666290_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	45.4	4.3e-99
WP_010595077.1|666289_666778_+	SUF system NifU family Fe-S cluster assembly protein	NA	A0A0K1LSF9	Mycobacterium_phage	44.4	2.4e-21
WP_010595076.1|666777_667158_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_048773575.1|667274_667667_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010595074.1|667711_668686_-	Ku protein	NA	A0A249XRB2	Mycobacterium_phage	43.2	2.3e-52
WP_010595073.1|668738_669863_-	lycopene cyclase family protein	NA	NA	NA	NA	NA
WP_010595072.1|669866_670673_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	33.9	2.9e-08
WP_010595071.1|670779_672408_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	27.5	2.5e-38
>prophage 2
NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	5522075	3644361	3705549	5522075	integrase,transposase	Mycobacterium_phage(66.67%)	47	3643167:3643187	3694175:3694195
3643167:3643187	attL	CCGGTGGTGCCGGACGTGTAG	NA	NA	NA	NA
WP_099528084.1|3644361_3645609_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_043805981.1|3646693_3648802_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	NA	NA	NA	NA
WP_010596658.1|3648798_3649827_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010596657.1|3649823_3650804_+	TniQ family protein	NA	NA	NA	NA	NA
WP_043805980.1|3650950_3652078_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010596655.1|3652083_3653097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157180029.1|3653409_3654303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010596654.1|3654315_3655146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157180028.1|3655608_3655917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099528102.1|3657107_3657977_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_010596652.1|3658135_3660496_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA	NA
WP_010596651.1|3660492_3661137_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010596650.1|3661235_3661547_-	WhiB family transcriptional regulator	NA	A0A222ZML0	Mycobacterium_phage	41.2	1.2e-05
WP_010596649.1|3661899_3663132_-	DUF3500 domain-containing protein	NA	NA	NA	NA	NA
WP_157180025.1|3663687_3665130_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_157180024.1|3665029_3665374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010596645.1|3665835_3666306_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010596644.1|3666305_3667043_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_029540240.1|3667123_3668770_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010596642.1|3668766_3669636_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010596641.1|3669993_3671136_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_099528104.1|3671258_3671930_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010596639.1|3672046_3672559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010596638.1|3673022_3674240_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_029540238.1|3674236_3675070_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_162294068.1|3675609_3676650_+	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	25.4	3.1e-18
WP_010596634.1|3676793_3677543_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_099528106.1|3677724_3678549_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_099528107.1|3678667_3680254_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_010596630.1|3680333_3681290_-	oxidoreductase	NA	NA	NA	NA	NA
WP_029540235.1|3681340_3682531_-	cytochrome P450	NA	NA	NA	NA	NA
WP_099528108.1|3682978_3684691_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_051009419.1|3685079_3686153_+	cytochrome P450	NA	NA	NA	NA	NA
WP_099528210.1|3686539_3687508_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010596625.1|3687820_3688789_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010596624.1|3689125_3690868_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_010596623.1|3691148_3692342_+	cytochrome P450	NA	NA	NA	NA	NA
WP_010596622.1|3692632_3693430_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010596621.1|3693626_3695255_+	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA
3694175:3694195	attR	CTACACGTCCGGCACCACCGG	NA	NA	NA	NA
WP_157768885.1|3695627_3696404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157768886.1|3696568_3697729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010596618.1|3697756_3699070_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	79.5	2.6e-200
WP_010596617.1|3699453_3699891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157180022.1|3700006_3700831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010596615.1|3700863_3701112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010596614.1|3701617_3703168_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_099528110.1|3703980_3705549_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP024315	Rhodococcus ruber strain P14 chromosome, complete genome	5522075	4137088	4205353	5522075	protease,tRNA,holin,transposase	Tupanvirus(18.75%)	55	NA	NA
WP_010595016.1|4137088_4138279_+|protease	MarP family serine protease	protease	NA	NA	NA	NA
WP_010595017.1|4138291_4139236_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003935267.1|4139244_4139745_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010595018.1|4139741_4140959_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	38.7	5.7e-56
WP_010595019.1|4141154_4142528_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010595020.1|4142598_4144536_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	36.9	5.1e-75
WP_010595021.1|4144739_4145492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010595022.1|4145919_4146762_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_017681222.1|4147106_4148180_+	CpaE-like family protein	NA	NA	NA	NA	NA
WP_010595025.1|4148176_4149349_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
WP_010595026.1|4149345_4150146_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_010595027.1|4150109_4150742_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_026137874.1|4150784_4150988_+	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
WP_017681224.1|4151005_4151320_+	pilus biosynthesis protein TadE	NA	NA	NA	NA	NA
WP_010595030.1|4151316_4151661_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA	NA
WP_010595031.1|4151668_4154014_-	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	28.2	2.9e-08
WP_003935252.1|4154406_4154610_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	57.8	5.2e-15
WP_017681225.1|4154739_4155327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010595034.1|4155461_4158392_+	type I DNA topoisomerase	NA	J3E777	Acanthamoeba_polyphaga_lentillevirus	34.1	2.9e-98
WP_010595035.1|4158423_4159098_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010595036.1|4159102_4159489_-	VOC family protein	NA	NA	NA	NA	NA
WP_010595037.1|4159583_4160771_+	DNA polymerase III subunit delta'	NA	S5WKH4	Pseudomonas_phage	29.4	8.6e-09
WP_010595038.1|4161197_4161395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099528110.1|4167600_4169169_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_010594631.1|4169454_4170096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010594630.1|4170167_4171361_+	MFS transporter	NA	NA	NA	NA	NA
WP_017681667.1|4171365_4172727_-	M1 family metallopeptidase	NA	A0A2K9L1R3	Tupanvirus	23.7	6.0e-22
WP_029540051.1|4172723_4176632_-	non-ribosomal peptide synthetase	NA	NA	NA	NA	NA
WP_010594627.1|4177065_4178385_+	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A2K9L2Y3	Tupanvirus	25.2	2.8e-32
WP_010594626.1|4178431_4178905_-	YbaK/EbsC family protein	NA	NA	NA	NA	NA
WP_010594625.1|4179000_4179522_-	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA	NA
WP_010594624.1|4179669_4180500_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010594623.1|4180511_4181615_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003938269.1|4181669_4182161_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	46.2	2.8e-30
WP_010594622.1|4182331_4183738_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010594621.1|4183728_4184769_+|protease	zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_010594620.1|4184771_4185770_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_003938265.1|4185790_4186345_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	28.0	5.3e-09
WP_099528128.1|4186332_4188453_-	protein kinase	NA	T2AWK4	Cannes_8_virus	29.8	1.8e-12
WP_099528129.1|4188680_4191038_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQU5	Bathycoccus_sp._RCC1105_virus	47.0	5.0e-109
WP_010594617.1|4191070_4191724_+	GTP cyclohydrolase I FolE	NA	A0A1W7AF02	Streptococcus_virus	55.3	2.2e-46
WP_085997952.1|4191726_4192578_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	34.0	1.9e-21
WP_010594615.1|4192574_4192943_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010594614.1|4192939_4193464_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_017681654.1|4193463_4193928_+	DUF3180 domain-containing protein	NA	NA	NA	NA	NA
WP_010594612.1|4194052_4194940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059175010.1|4195068_4196004_+	DUF2520 domain-containing protein	NA	NA	NA	NA	NA
WP_010594609.1|4195996_4196938_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003935999.1|4196969_4197407_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010594608.1|4197409_4198252_+	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010594607.1|4198339_4198783_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010594606.1|4198859_4200368_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	35.2	8.3e-73
WP_010594605.1|4200470_4200821_+	Lsr2 family protein	NA	NA	NA	NA	NA
WP_026137980.1|4201140_4202571_+	phospholipase D	NA	NA	NA	NA	NA
WP_010594602.1|4202827_4205353_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2C9CYX3	Yersinia_phage	38.7	6.5e-131
