assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	1	1182618-1182741	1	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_CP024289.1_1191637_1191727_+	NA|471aa|up_9|NZ_CP024289.1_1172071_1173484_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024289.1_1174040_1174250_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024289.1_1174705_1175332_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024289.1_1175352_1177455_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024289.1_1177458_1178106_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024289.1_1178169_1178838_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024289.1_1178834_1179620_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024289.1_1179623_1180436_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024289.1_1180447_1182052_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024289.1_1182177_1182483_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024289.1_1183055_1184312_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024289.1_1184352_1185726_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024289.1_1185940_1186582_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024289.1_1186621_1187770_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024289.1_1188060_1189272_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024289.1_1189384_1190317_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024289.1_1190313_1191339_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024289.1_1191637_1191727_+	NA	NA|390aa|down_8|NZ_CP024289.1_1191892_1193062_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024289.1_1193207_1193789_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	2	1792292-1792494	1	PILER-CR	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TCTCCCCACTTTTACTCCCCACTTTTT	27	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|94aa|up_3|NZ_CP024289.1_1788533_1788815_-,NA|84aa|up_0|NZ_CP024289.1_1792039_1792291_-,NA|78aa|down_1|NZ_CP024289.1_1794203_1794437_-,NA|74aa|down_2|NZ_CP024289.1_1794438_1794660_-,NA|80aa|down_3|NZ_CP024289.1_1794652_1794892_-,NA|71aa|down_4|NZ_CP024289.1_1794881_1795094_-,NA|102aa|down_6|NZ_CP024289.1_1795842_1796148_+,NA|76aa|down_7|NZ_CP024289.1_1796205_1796433_+,NA|60aa|down_8|NZ_CP024289.1_1796653_1796833_+,NA|68aa|down_9|NZ_CP024289.1_1796890_1797094_+	NA|154aa|up_9|NZ_CP024289.1_1781895_1782357_+	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|369aa|up_8|NZ_CP024289.1_1782410_1783517_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|214aa|up_7|NZ_CP024289.1_1783552_1784194_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|457aa|up_6|NZ_CP024289.1_1784197_1785568_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|224aa|up_5|NZ_CP024289.1_1785735_1786407_+	PRK10816, PRK10816, two-component system response regulator PhoP	NA|487aa|up_4|NZ_CP024289.1_1786406_1787867_+	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|94aa|up_3|NZ_CP024289.1_1788533_1788815_-	NA	NA|630aa|up_2|NZ_CP024289.1_1789072_1790962_-	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|141aa|up_1|NZ_CP024289.1_1791620_1792043_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|84aa|up_0|NZ_CP024289.1_1792039_1792291_-	NA	NA|100aa|down_0|NZ_CP024289.1_1793898_1794198_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|78aa|down_1|NZ_CP024289.1_1794203_1794437_-	NA	NA|74aa|down_2|NZ_CP024289.1_1794438_1794660_-	NA	NA|80aa|down_3|NZ_CP024289.1_1794652_1794892_-	NA	NA|71aa|down_4|NZ_CP024289.1_1794881_1795094_-	NA	NA|186aa|down_5|NZ_CP024289.1_1795086_1795644_-	pfam10554, Phage_ASH, Ash protein family	NA|102aa|down_6|NZ_CP024289.1_1795842_1796148_+	NA	NA|76aa|down_7|NZ_CP024289.1_1796205_1796433_+	NA	NA|60aa|down_8|NZ_CP024289.1_1796653_1796833_+	NA	NA|68aa|down_9|NZ_CP024289.1_1796890_1797094_+	NA
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	3	1964910-1965001	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|70aa|up_9|NZ_CP024289.1_1954160_1954370_-,NA	NA|70aa|up_9|NZ_CP024289.1_1954160_1954370_-	NA	NA|1321aa|up_8|NZ_CP024289.1_1954424_1958387_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024289.1_1958426_1959065_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024289.1_1959352_1960444_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024289.1_1960443_1961136_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024289.1_1961147_1961534_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024289.1_1961541_1962342_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024289.1_1962351_1962942_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024289.1_1962952_1963447_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024289.1_1963467_1964796_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024289.1_1965424_1966021_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024289.1_1966041_1966269_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024289.1_1966306_1967548_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP024289.1_1967840_1969100_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP024289.1_1969360_1970281_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP024289.1_1970280_1970586_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP024289.1_1970678_1971278_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP024289.1_1971274_1973821_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP024289.1_1973820_1974993_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP024289.1_1975122_1975815_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	4	2228487-2228632	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	53	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|330aa|up_9|NZ_CP024289.1_2216391_2217381_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP024289.1_2217777_2218686_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP024289.1_2218877_2220899_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP024289.1_2221477_2222155_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP024289.1_2222147_2222903_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP024289.1_2222889_2224044_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP024289.1_2224040_2225081_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP024289.1_2225167_2226457_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP024289.1_2226515_2226992_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP024289.1_2227143_2228427_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP024289.1_2228660_2230922_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP024289.1_2231104_2232538_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|318aa|down_2|NZ_CP024289.1_2233849_2234803_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP024289.1_2234843_2235839_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP024289.1_2235993_2236812_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP024289.1_2236812_2237871_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP024289.1_2237873_2238563_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP024289.1_2238562_2239336_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP024289.1_2239501_2239651_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP024289.1_2239779_2240568_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	5	3073694-3073826	2	PILER-CR	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|200aa|up_9|NZ_CP024289.1_3064300_3064900_+	pfam14124, DUF4291, Domain of unknown function (DUF4291)	NA|60aa|up_8|NZ_CP024289.1_3065501_3065681_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP024289.1_3065701_3066181_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP024289.1_3066372_3068235_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP024289.1_3068227_3068758_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP024289.1_3068865_3070197_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP024289.1_3070255_3070543_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP024289.1_3070539_3071826_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP024289.1_3071876_3072818_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP024289.1_3072832_3073603_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP024289.1_3074076_3075591_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP024289.1_3075621_3076764_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP024289.1_3076892_3078110_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP024289.1_3078183_3079737_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP024289.1_3079845_3080631_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP024289.1_3080636_3081227_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP024289.1_3081312_3081708_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP024289.1_3081968_3085190_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP024289.1_3085207_3086356_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP024289.1_3086811_3087633_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	6	4562735-4562852	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|55aa|down_0|NZ_CP024289.1_4562925_4563090_-	NA|115aa|up_9|NZ_CP024289.1_4550456_4550801_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP024289.1_4550989_4551928_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP024289.1_4552026_4553016_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP024289.1_4553037_4554369_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP024289.1_4554394_4555603_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP024289.1_4555636_4557931_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP024289.1_4557944_4558334_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP024289.1_4558405_4559770_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP024289.1_4560044_4561376_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP024289.1_4561403_4562714_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP024289.1_4562925_4563090_-	NA	NA|234aa|down_1|NZ_CP024289.1_4563112_4563814_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP024289.1_4563918_4564815_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP024289.1_4564865_4565222_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP024289.1_4565463_4565829_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP024289.1_4566121_4567108_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP024289.1_4567177_4567660_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP024289.1_4567755_4568055_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP024289.1_4568044_4568449_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP024289.1_4568451_4568757_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	7	5040463-5041101	3,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_CP024289.1_5039172_5039313_-,NA	NA|919aa|up_9|NZ_CP024289.1_5027056_5029813_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP024289.1_5029869_5031171_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP024289.1_5031218_5033453_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP024289.1_5033530_5033779_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP024289.1_5033778_5034114_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP024289.1_5034184_5034976_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP024289.1_5035203_5036841_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP024289.1_5036928_5038227_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP024289.1_5039172_5039313_-	NA	NA|224aa|up_0|NZ_CP024289.1_5039451_5040123_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP024289.1_5041739_5043218_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP024289.1_5043244_5044522_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP024289.1_5044840_5045626_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP024289.1_5045695_5047150_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP024289.1_5047243_5048581_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP024289.1_5048558_5049338_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP024289.1_5049334_5050195_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP024289.1_5050342_5050918_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP024289.1_5050934_5051195_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP024289.1_5051185_5052457_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002741595.1_ASM274159v1	NZ_CP024289	Escherichia coli O178:H19 strain 2012C-4431 chromosome, complete genome	8	5066802-5067196	4,2,6	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,29,27	0	0	NA	NA	I-E:I-E:I-E	5,6,5	6	TypeI-E	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|NZ_CP024289.1_5056800_5057535_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP024289.1_5057799_5057952_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP024289.1_5058146_5060846_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP024289.1_5060943_5062506_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP024289.1_5062502_5063039_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP024289.1_5063050_5064106_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP024289.1_5064116_5064863_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP024289.1_5064844_5065495_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP024289.1_5065491_5066415_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP024289.1_5066411_5066705_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP024289.1_5067216_5068254_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024289.1_5068505_5069414_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024289.1_5069415_5070843_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024289.1_5070842_5071448_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024289.1_5071497_5071821_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024289.1_5072014_5072326_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024289.1_5072344_5073055_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024289.1_5073054_5073534_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|NA	NA	NA|NA	NA
GCF_002741595.1_ASM274159v1	NZ_CP024290	Escherichia coli O178:H19 strain 2012C-4431 plasmid unnamed1, complete sequence	1	33610-33729	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|182aa|up_9|NZ_CP024290.1_28206_28752_-,NA|91aa|up_8|NZ_CP024290.1_29077_29350_-,NA|60aa|up_7|NZ_CP024290.1_29582_29762_-,NA|110aa|up_6|NZ_CP024290.1_29804_30134_-,NA|71aa|up_4|NZ_CP024290.1_30459_30672_-,NA|183aa|up_3|NZ_CP024290.1_30737_31286_-,NA|149aa|down_2|NZ_CP024290.1_35687_36134_+	NA|182aa|up_9|NZ_CP024290.1_28206_28752_-	NA	NA|91aa|up_8|NZ_CP024290.1_29077_29350_-	NA	NA|60aa|up_7|NZ_CP024290.1_29582_29762_-	NA	NA|110aa|up_6|NZ_CP024290.1_29804_30134_-	NA	NA|81aa|up_5|NZ_CP024290.1_30227_30470_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|71aa|up_4|NZ_CP024290.1_30459_30672_-	NA	NA|183aa|up_3|NZ_CP024290.1_30737_31286_-	NA	NA|172aa|up_2|NZ_CP024290.1_31359_31875_-	cd06257, DnaJ, DnaJ domain or J-domain	NA|94aa|up_1|NZ_CP024290.1_32224_32506_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP024290.1_32495_32747_-	PRK02854, PRK02854, primosomal protein DnaT	NA|280aa|down_0|NZ_CP024290.1_33981_34821_+	pfam01051, Rep_3, Initiator Replication protein	NA|281aa|down_1|NZ_CP024290.1_34841_35684_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_2|NZ_CP024290.1_35687_36134_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
