assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	1	483985-484128	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	AGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|418aa|up_9|NZ_CP024275.1_470908_472162_-	PRK09528, lacY, galactoside permease; Reviewed	NA|1025aa|up_8|NZ_CP024275.1_472213_475288_-	PRK09525, lacZ, beta-galactosidase	NA|361aa|up_7|NZ_CP024275.1_475410_476493_-	PRK09526, lacI, lac repressor; Reviewed	NA|316aa|up_6|NZ_CP024275.1_476569_477517_-	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|555aa|up_5|NZ_CP024275.1_477593_479258_+	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|315aa|up_4|NZ_CP024275.1_479259_480204_+	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|289aa|up_3|NZ_CP024275.1_480221_481088_+	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|270aa|up_2|NZ_CP024275.1_481097_481907_+	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|317aa|up_1|NZ_CP024275.1_481903_482854_+	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|338aa|up_0|NZ_CP024275.1_482850_483864_+	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|404aa|down_0|NZ_CP024275.1_484241_485453_+	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|180aa|down_1|NZ_CP024275.1_485554_486094_+	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|278aa|down_2|NZ_CP024275.1_486319_487153_-	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|370aa|down_3|NZ_CP024275.1_487245_488355_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|92aa|down_4|NZ_CP024275.1_488389_488665_-	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|258aa|down_5|NZ_CP024275.1_488851_489625_-	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|194aa|down_6|NZ_CP024275.1_489626_490208_-	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|399aa|down_7|NZ_CP024275.1_490185_491382_-	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|224aa|down_8|NZ_CP024275.1_491391_492063_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|321aa|down_9|NZ_CP024275.1_492678_493641_+	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	2	517318-517462	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_2|NZ_CP024275.1_515188_515272_+,NA	NA|372aa|up_9|NZ_CP024275.1_509944_511060_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP024275.1_511076_511886_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|155aa|up_7|NZ_CP024275.1_512005_512470_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP024275.1_512646_513171_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP024275.1_513220_513412_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP024275.1_513669_514347_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP024275.1_514418_514703_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP024275.1_515188_515272_+	NA	NA|304aa|up_1|NZ_CP024275.1_515349_516261_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP024275.1_516385_517294_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP024275.1_517538_518723_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP024275.1_518848_521995_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP024275.1_521991_523194_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP024275.1_523383_524073_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP024275.1_524130_525426_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP024275.1_525832_527152_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP024275.1_527227_528601_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP024275.1_528756_530574_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP024275.1_530578_531160_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP024275.1_531252_532323_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	3	647071-647167	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|805aa|up_9|NZ_CP024275.1_626657_629072_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1427aa|up_8|NZ_CP024275.1_629501_633782_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|123aa|up_7|NZ_CP024275.1_633821_634190_+	pfam15631, Imm-NTF2-2, NTF2 fold immunity protein	NA|365aa|up_6|NZ_CP024275.1_636373_637468_-	COG2603, COG2603, Predicted ATPase [General function prediction only]	NA|309aa|up_5|NZ_CP024275.1_637536_638463_-	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|161aa|up_4|NZ_CP024275.1_638692_639175_+	COG3194, DAL3, Ureidoglycolate hydrolase [Nucleotide transport and metabolism]	NA|272aa|up_3|NZ_CP024275.1_639252_640068_+	PRK10163, PRK10163, HTH-type transcriptional repressor AllR	NA|420aa|up_2|NZ_CP024275.1_644061_645321_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP024275.1_645331_646147_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP024275.1_646143_647037_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP024275.1_647231_648299_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP024275.1_648295_648805_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP024275.1_648922_649645_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP024275.1_649647_650142_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP024275.1_650315_651701_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP024275.1_651736_652258_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP024275.1_652365_652578_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP024275.1_652579_653446_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|172aa|down_8|NZ_CP024275.1_654687_655203_+	PRK09934, PRK09934, fimbriae assembly protein	NA|211aa|down_9|NZ_CP024275.1_655205_655838_-	PRK09935, PRK09935, fimbriae biosynthesis transcriptional regulator FimZ
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	4	2208789-2208922	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|336aa|up_9|NZ_CP024275.1_2196751_2197759_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|382aa|up_8|NZ_CP024275.1_2197775_2198921_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|344aa|up_7|NZ_CP024275.1_2198907_2199939_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|287aa|up_6|NZ_CP024275.1_2199935_2200796_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|448aa|up_5|NZ_CP024275.1_2200801_2202145_-	pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy	NA|419aa|up_4|NZ_CP024275.1_2202144_2203401_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|298aa|up_3|NZ_CP024275.1_2203757_2204651_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_2|NZ_CP024275.1_2204825_2206220_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP024275.1_2206230_2207451_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP024275.1_2207447_2208728_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP024275.1_2209003_2210482_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP024275.1_2210483_2211878_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP024275.1_2211932_2213303_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP024275.1_2213583_2215020_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP024275.1_2215022_2216246_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP024275.1_2216242_2216722_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP024275.1_2216724_2217690_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP024275.1_2217692_2218814_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP024275.1_2218841_2219390_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP024275.1_2219405_2220152_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	5	2213448-2213582	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|287aa|up_9|NZ_CP024275.1_2199935_2200796_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|448aa|up_8|NZ_CP024275.1_2200801_2202145_-	pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy	NA|419aa|up_7|NZ_CP024275.1_2202144_2203401_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|298aa|up_6|NZ_CP024275.1_2203757_2204651_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_5|NZ_CP024275.1_2204825_2206220_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_4|NZ_CP024275.1_2206230_2207451_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_3|NZ_CP024275.1_2207447_2208728_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|up_2|NZ_CP024275.1_2209003_2210482_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|up_1|NZ_CP024275.1_2210483_2211878_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|up_0|NZ_CP024275.1_2211932_2213303_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_0|NZ_CP024275.1_2213583_2215020_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_1|NZ_CP024275.1_2215022_2216246_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_2|NZ_CP024275.1_2216242_2216722_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_3|NZ_CP024275.1_2216724_2217690_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_4|NZ_CP024275.1_2217692_2218814_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_5|NZ_CP024275.1_2218841_2219390_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_6|NZ_CP024275.1_2219405_2220152_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|406aa|down_7|NZ_CP024275.1_2220162_2221380_-	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|406aa|down_8|NZ_CP024275.1_2221354_2222572_-	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|163aa|down_9|NZ_CP024275.1_2222568_2223057_-	PRK10191, PRK10191, putative acyl transferase; Provisional
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	6	2438198-2438324	6	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|441aa|up_9|NZ_CP024275.1_2415752_2417075_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_8|NZ_CP024275.1_2417105_2418290_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_7|NZ_CP024275.1_2418363_2419140_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_6|NZ_CP024275.1_2419144_2420794_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_5|NZ_CP024275.1_2420794_2425189_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_4|NZ_CP024275.1_2425332_2425956_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP024275.1_2427789_2430417_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP024275.1_2430563_2431286_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP024275.1_2431413_2435166_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP024275.1_2435861_2438147_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP024275.1_2438380_2439511_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP024275.1_2439510_2439765_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP024275.1_2439818_2440469_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP024275.1_2440931_2442008_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP024275.1_2442012_2443371_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP024275.1_2443643_2445272_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP024275.1_2445261_2446521_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP024275.1_2446517_2447708_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP024275.1_2447900_2448800_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP024275.1_2448812_2448998_+	PRK09956, PRK09956, ISNCY family transposase
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	7	2933066-2933210	7	CRISPRCasFinder	no	csa3	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-A	CACAATGCCTGATGCGACGCTGGAGCGTCTTATCATGCCTACAAA	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|150aa|up_9|NZ_CP024275.1_2924056_2924506_+	pfam06610, AlaE, L-alanine exporter	NA|115aa|up_8|NZ_CP024275.1_2924542_2924887_-	PRK10556, PRK10556, hypothetical protein; Provisional	NA|110aa|up_7|NZ_CP024275.1_2925038_2925368_+	PRK10132, PRK10132, hypothetical protein; Provisional	NA|82aa|up_6|NZ_CP024275.1_2925615_2925861_+	PRK10329, PRK10329, glutaredoxin-like protein NrdH	NA|137aa|up_5|NZ_CP024275.1_2925857_2926268_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|715aa|up_4|NZ_CP024275.1_2926240_2928385_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|320aa|up_3|NZ_CP024275.1_2928394_2929354_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|401aa|up_2|NZ_CP024275.1_2929707_2930910_+	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV	NA|355aa|up_1|NZ_CP024275.1_2930902_2931967_+	PRK10952, PRK10952, proline/glycine betaine ABC transporter permease ProW	NA|331aa|up_0|NZ_CP024275.1_2932024_2933017_+	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX	NA|395aa|down_0|NZ_CP024275.1_2933308_2934493_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|246aa|down_1|NZ_CP024275.1_2934616_2935354_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|112aa|down_2|NZ_CP024275.1_2935343_2935679_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|177aa|down_3|NZ_CP024275.1_2935769_2936300_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|391aa|down_4|NZ_CP024275.1_2936426_2937599_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|513aa|down_5|NZ_CP024275.1_2937615_2939154_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|172aa|down_6|NZ_CP024275.1_2939217_2939733_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|519aa|down_7|NZ_CP024275.1_2939882_2941439_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|143aa|down_8|NZ_CP024275.1_2941511_2941940_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|189aa|down_9|NZ_CP024275.1_2941936_2942503_-	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	8	3002614-3003740	8,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,16	18	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP024275.1_2994487_2995249_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP024275.1_2995229_2996279_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP024275.1_2996275_2996755_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP024275.1_2996754_2997465_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP024275.1_2997483_2997795_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP024275.1_2997988_2998312_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP024275.1_2998361_2998967_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP024275.1_2998966_3000394_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP024275.1_3000395_3001304_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP024275.1_3001555_3002593_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP024275.1_3003845_3004130_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP024275.1_3004131_3005049_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP024275.1_3005064_3005664_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP024275.1_3005650_3006325_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP024275.1_3006327_3007419_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP024275.1_3007431_3007914_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|451aa|down_6|NZ_CP024275.1_3008062_3009415_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP024275.1_3009829_3012496_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP024275.1_3012854_3013589_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP024275.1_3013662_3015375_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002741575.1_ASM274157v1	NZ_CP024275	Escherichia coli O6:H16 strain M9682-C1 chromosome, complete genome	9	3029290-3030172	9,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,13	14	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|424aa|up_9|NZ_CP024275.1_3017932_3019204_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP024275.1_3019194_3019455_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP024275.1_3019471_3020047_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP024275.1_3020194_3021055_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP024275.1_3021051_3021831_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP024275.1_3021808_3023146_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP024275.1_3023239_3024694_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP024275.1_3024763_3025549_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP024275.1_3025868_3027146_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP024275.1_3027172_3028651_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP024275.1_3030511_3031183_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP024275.1_3031476_3032349_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP024275.1_3032408_3033707_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP024275.1_3033794_3035432_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP024275.1_3035659_3036451_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP024275.1_3036521_3036857_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP024275.1_3036856_3037105_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP024275.1_3037182_3039417_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP024275.1_3039464_3040766_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP024275.1_3040822_3043579_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
