assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	1	134207-134324	1	CRISPRCasFinder	no		RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA|55aa|down_0|NZ_CP024278.1_134397_134562_-	NA|115aa|up_9|NZ_CP024278.1_121928_122273_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP024278.1_122461_123400_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP024278.1_123498_124488_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP024278.1_124509_125841_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP024278.1_125866_127075_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP024278.1_127108_129403_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP024278.1_129416_129806_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP024278.1_129877_131242_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP024278.1_131516_132848_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP024278.1_132875_134186_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP024278.1_134397_134562_-	NA	NA|234aa|down_1|NZ_CP024278.1_134584_135286_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP024278.1_135390_136287_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP024278.1_136337_136694_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP024278.1_136935_137301_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP024278.1_137593_138580_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP024278.1_138649_139132_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP024278.1_139227_139527_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP024278.1_139516_139921_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP024278.1_139923_140229_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	2	534111-535176	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3HD,cas3	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,TCCCCGCGCCAGCGGGGATAAACC	29,29,28,24	0	0	NA	NA	I-E:I-E:I-E:I-E	15,17,17,15	17	Unclear	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA|47aa|up_1|NZ_CP024278.1_532820_532961_-,NA	NA|434aa|up_9|NZ_CP024278.1_523517_524819_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP024278.1_524866_527101_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP024278.1_527178_527427_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP024278.1_527426_527762_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP024278.1_527832_528624_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP024278.1_528851_530489_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP024278.1_530576_531875_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP024278.1_531934_532807_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP024278.1_532820_532961_-	NA	NA|224aa|up_0|NZ_CP024278.1_533099_533771_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP024278.1_535814_537293_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP024278.1_537319_538597_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP024278.1_538915_539701_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP024278.1_539770_541225_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP024278.1_541318_542656_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP024278.1_542633_543413_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP024278.1_543409_544270_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP024278.1_544417_544993_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP024278.1_545009_545270_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP024278.1_545260_546532_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	3	560875-561330	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA	NA|51aa|up_9|NZ_CP024278.1_551874_552027_+	pfam01848, HOK_GEF, Hok/gef family	cas3HD|150aa|up_8|NZ_CP024278.1_552219_552669_+	pfam18019, HD_6, HD domain	cas3|747aa|up_7|NZ_CP024278.1_552678_554919_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP024278.1_555016_556579_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP024278.1_556575_557112_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP024278.1_557123_558179_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP024278.1_558189_558936_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP024278.1_558917_559568_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP024278.1_559564_560485_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP024278.1_560484_560778_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP024278.1_561411_562449_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024278.1_562700_563609_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024278.1_563610_565038_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024278.1_565037_565643_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024278.1_565692_566016_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024278.1_566209_566521_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024278.1_566539_567250_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024278.1_567249_567729_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024278.1_567725_568775_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024278.1_568755_569517_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	4	1837961-1838084	4	CRISPRCasFinder	no	DEDDh	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA|30aa|down_7|NZ_CP024278.1_1846980_1847070_+	NA|79aa|up_9|NZ_CP024278.1_1826860_1827097_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP024278.1_1827407_1828820_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP024278.1_1829376_1829586_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP024278.1_1830041_1830668_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP024278.1_1830688_1832791_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|223aa|up_4|NZ_CP024278.1_1833512_1834181_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024278.1_1834177_1834963_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024278.1_1834966_1835779_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024278.1_1835790_1837395_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024278.1_1837520_1837826_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024278.1_1838398_1839655_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024278.1_1839695_1841069_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024278.1_1841283_1841925_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024278.1_1841964_1843113_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024278.1_1843403_1844615_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024278.1_1844727_1845660_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024278.1_1845656_1846682_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024278.1_1846980_1847070_+	NA	NA|390aa|down_8|NZ_CP024278.1_1847235_1848405_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024278.1_1848550_1849132_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	5	2678644-2678735	5	CRISPRCasFinder	no		RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA|70aa|up_9|NZ_CP024278.1_2667894_2668104_-,NA	NA|70aa|up_9|NZ_CP024278.1_2667894_2668104_-	NA	NA|1321aa|up_8|NZ_CP024278.1_2668158_2672121_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024278.1_2672160_2672799_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024278.1_2673086_2674178_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024278.1_2674177_2674870_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024278.1_2674881_2675268_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024278.1_2675275_2676076_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024278.1_2676085_2676676_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024278.1_2676686_2677181_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024278.1_2677201_2678530_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024278.1_2679158_2679755_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024278.1_2679775_2680003_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024278.1_2680040_2681282_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP024278.1_2681574_2682831_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP024278.1_2683091_2684012_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP024278.1_2684011_2684317_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP024278.1_2684409_2685009_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP024278.1_2685005_2687552_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP024278.1_2687551_2688724_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP024278.1_2688853_2689546_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	6	2821450-2822198	6,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,12,11	12	TypeI-F	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA	NA|431aa|up_9|NZ_CP024278.1_2806767_2808060_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP024278.1_2808150_2809494_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP024278.1_2809504_2810116_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP024278.1_2810270_2814338_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP024278.1_2814472_2814967_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP024278.1_2815511_2816477_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP024278.1_2816599_2818366_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP024278.1_2818366_2820088_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP024278.1_2820129_2820834_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP024278.1_2821118_2821337_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|down_0|NZ_CP024278.1_2822740_2823295_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|NZ_CP024278.1_2823305_2824307_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|down_2|NZ_CP024278.1_2824317_2825241_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|down_3|NZ_CP024278.1_2825237_2826545_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_4|NZ_CP024278.1_2826875_2830109_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_5|NZ_CP024278.1_2830105_2831089_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_6|NZ_CP024278.1_2832281_2834558_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_7|NZ_CP024278.1_2834588_2834909_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_8|NZ_CP024278.1_2835231_2835456_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_9|NZ_CP024278.1_2835528_2837475_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	7	2831262-2832069	7,4,5	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	13,13,12	13	TypeI-F	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA	NA|589aa|up_9|NZ_CP024278.1_2816599_2818366_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_8|NZ_CP024278.1_2818366_2820088_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_7|NZ_CP024278.1_2820129_2820834_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_6|NZ_CP024278.1_2821118_2821337_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|up_5|NZ_CP024278.1_2822740_2823295_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_4|NZ_CP024278.1_2823305_2824307_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|up_3|NZ_CP024278.1_2824317_2825241_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|up_2|NZ_CP024278.1_2825237_2826545_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|up_1|NZ_CP024278.1_2826875_2830109_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|up_0|NZ_CP024278.1_2830105_2831089_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|NZ_CP024278.1_2832281_2834558_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP024278.1_2834588_2834909_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP024278.1_2835231_2835456_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP024278.1_2835528_2837475_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP024278.1_2837471_2838587_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP024278.1_2838737_2839694_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP024278.1_2839690_2841349_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP024278.1_2841774_2842470_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP024278.1_2842964_2843864_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP024278.1_2844007_2845660_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	8	2989138-2989282	8	CRISPRCasFinder	no		RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA|91aa|up_4|NZ_CP024278.1_2984712_2984985_+,NA	NA|234aa|up_9|NZ_CP024278.1_2981464_2982166_-	pfam06992, Phage_lambda_P, Replication protein P	NA|300aa|up_8|NZ_CP024278.1_2982162_2983062_-	TIGR01610, Replication_protein_15, phage replication protein O, N-terminal domain	NA|93aa|up_7|NZ_CP024278.1_2983096_2983375_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|62aa|up_6|NZ_CP024278.1_2983483_2983669_-	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro	NA|217aa|up_5|NZ_CP024278.1_2983749_2984400_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|91aa|up_4|NZ_CP024278.1_2984712_2984985_+	NA	NA|194aa|up_3|NZ_CP024278.1_2985001_2985583_-	pfam14163, SieB, Super-infection exclusion protein B	NA|383aa|up_2|NZ_CP024278.1_2985800_2986948_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|215aa|up_1|NZ_CP024278.1_2987009_2987654_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP024278.1_2987788_2989072_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP024278.1_2989305_2991567_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP024278.1_2991749_2993183_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP024278.1_2993258_2994311_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP024278.1_2994494_2995448_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP024278.1_2995488_2996484_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP024278.1_2996638_2997457_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP024278.1_2997457_2998516_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP024278.1_2998518_2999208_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP024278.1_2999207_2999981_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP024278.1_3000147_3000297_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	9	3400709-3400853	9	CRISPRCasFinder	no		RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	TAAACCGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCAT	45	0	0	NA	NA	NA	1	1	Orphan	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA	NA|276aa|up_9|NZ_CP024278.1_3391724_3392552_-	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|256aa|up_8|NZ_CP024278.1_3392548_3393316_-	PRK11248, tauB, taurine ABC transporter ATP-binding subunit	NA|321aa|up_7|NZ_CP024278.1_3393328_3394291_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_6|NZ_CP024278.1_3394906_3395578_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_5|NZ_CP024278.1_3395587_3396784_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_4|NZ_CP024278.1_3396761_3397343_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_3|NZ_CP024278.1_3397344_3398118_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_2|NZ_CP024278.1_3398303_3398579_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_1|NZ_CP024278.1_3398613_3399723_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_0|NZ_CP024278.1_3399815_3400649_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|down_0|NZ_CP024278.1_3400874_3401414_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|down_1|NZ_CP024278.1_3401515_3402727_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_2|NZ_CP024278.1_3402902_3403916_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_3|NZ_CP024278.1_3403912_3404863_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_4|NZ_CP024278.1_3404859_3405669_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_5|NZ_CP024278.1_3405678_3406545_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_6|NZ_CP024278.1_3406562_3407507_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_7|NZ_CP024278.1_3407508_3409173_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_8|NZ_CP024278.1_3409249_3410197_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_9|NZ_CP024278.1_3410273_3411356_+	PRK09526, lacI, lac repressor; Reviewed
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	10	3717603-3717718	10	CRISPRCasFinder	no		RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA,NA	NA|393aa|up_9|NZ_CP024278.1_3705630_3706809_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP024278.1_3706910_3707042_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP024278.1_3707130_3708786_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP024278.1_3708949_3709933_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP024278.1_3709908_3711519_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP024278.1_3711502_3712201_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP024278.1_3712302_3713067_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP024278.1_3713152_3714031_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP024278.1_3714369_3716070_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP024278.1_3716080_3717583_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP024278.1_3717782_3718478_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP024278.1_3718552_3720904_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP024278.1_3721068_3723975_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP024278.1_3723986_3724646_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP024278.1_3724762_3725578_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP024278.1_3725832_3728187_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP024278.1_3728239_3729526_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP024278.1_3729525_3730515_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP024278.1_3730511_3731333_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP024278.1_3731335_3731713_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_002741355.1_ASM274135v1	NZ_CP024278	Escherichia coli strain ATCC 43896 chromosome, complete genome	11	3741987-3742119	6	PILER-CR	no		RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	RT,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f	NA|156aa|up_9|NZ_CP024278.1_3733227_3733695_+,NA	NA|156aa|up_9|NZ_CP024278.1_3733227_3733695_+	NA	NA|60aa|up_8|NZ_CP024278.1_3733793_3733973_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP024278.1_3733993_3734473_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP024278.1_3734665_3736528_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP024278.1_3736520_3737051_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP024278.1_3737158_3738490_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP024278.1_3738548_3738836_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP024278.1_3738832_3740119_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP024278.1_3740169_3741111_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP024278.1_3741125_3741896_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP024278.1_3742369_3743884_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP024278.1_3743914_3745057_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|327aa|down_2|NZ_CP024278.1_3745293_3746274_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|406aa|down_3|NZ_CP024278.1_3746464_3747682_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_4|NZ_CP024278.1_3747755_3749309_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_5|NZ_CP024278.1_3749417_3750203_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_6|NZ_CP024278.1_3750208_3750799_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_7|NZ_CP024278.1_3750884_3751280_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_8|NZ_CP024278.1_3751540_3754762_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP024278.1_3754779_3755928_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
