assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002741075.1_IEC330191.0	NZ_CP016634	Pseudomonas putida strain IEC33019 chromosome, complete genome	1	880400-880473	1	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh,PD-DExK,casR	Orphan	ACCTTTACGTTAACGTAAACCTGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,PD-DExK,casR,RT	NA|81aa|up_7|NZ_CP016634.1_870932_871175_-,NA|106aa|up_5|NZ_CP016634.1_873544_873862_-,NA	NA|628aa|up_9|NZ_CP016634.1_866926_868810_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|654aa|up_8|NZ_CP016634.1_868864_870826_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|81aa|up_7|NZ_CP016634.1_870932_871175_-	NA	NA|383aa|up_6|NZ_CP016634.1_871706_872855_-	cd06234, M14_PaCCP-like, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar to Pseudomonas aerugnosa CCP (PaCCP)	NA|106aa|up_5|NZ_CP016634.1_873544_873862_-	NA	NA|218aa|up_4|NZ_CP016634.1_873992_874646_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|651aa|up_3|NZ_CP016634.1_874713_876666_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|271aa|up_2|NZ_CP016634.1_876662_877475_-	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated	NA|536aa|up_1|NZ_CP016634.1_877478_879086_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|388aa|up_0|NZ_CP016634.1_879105_880269_-	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|557aa|down_0|NZ_CP016634.1_880531_882202_+	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|56aa|down_1|NZ_CP016634.1_882407_882575_-	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|673aa|down_2|NZ_CP016634.1_882712_884731_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|1104aa|down_3|NZ_CP016634.1_884870_888182_+	TIGR02456, Trehalose_synthase, trehalose synthase	NA|737aa|down_4|NZ_CP016634.1_888258_890469_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|359aa|down_5|NZ_CP016634.1_890711_891788_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|265aa|down_6|NZ_CP016634.1_892118_892913_-	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|718aa|down_7|NZ_CP016634.1_893052_895206_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|101aa|down_8|NZ_CP016634.1_895349_895652_-	pfam11154, DUF2934, Protein of unknown function (DUF2934)	NA|925aa|down_9|NZ_CP016634.1_895666_898441_-	PRK14511, PRK14511, malto-oligosyltrehalose synthase
GCF_002741075.1_IEC330191.0	NZ_CP016634	Pseudomonas putida strain IEC33019 chromosome, complete genome	2	1604276-1604413	2	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh,PD-DExK,casR	Orphan	CTGTGGGAGCGGGTTTACCCGCGAAGAAAGCACCGCAGAA	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,PD-DExK,casR,RT	NA|244aa|up_9|NZ_CP016634.1_1594218_1594950_+,NA	NA|244aa|up_9|NZ_CP016634.1_1594218_1594950_+	NA	NA|319aa|up_8|NZ_CP016634.1_1595292_1596249_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|453aa|up_7|NZ_CP016634.1_1596409_1597768_+	TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit	NA|162aa|up_6|NZ_CP016634.1_1597764_1598250_+	TIGR03232, benzo_1_2_benB, benzoate 1,2-dioxygenase, small subunit	NA|338aa|up_5|NZ_CP016634.1_1598323_1599337_+	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	NA|254aa|up_4|NZ_CP016634.1_1599515_1600277_+	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional	NA|443aa|up_3|NZ_CP016634.1_1600331_1601660_+	TIGR00895, transport_protein, benzoate transport	NA|374aa|up_2|NZ_CP016634.1_1601689_1602811_+	cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway	NA|97aa|up_1|NZ_CP016634.1_1602929_1603220_+	TIGR03221, muco_delta, muconolactone delta-isomerase	NA|309aa|up_0|NZ_CP016634.1_1603259_1604186_+	TIGR02439, Catechol_12-dioxygenase_1, catechol 1,2-dioxygenase, proteobacterial	NA|400aa|down_0|NZ_CP016634.1_1604490_1605690_+	pfam03594, BenE, Benzoate membrane transport protein	NA|417aa|down_1|NZ_CP016634.1_1605767_1607018_+	pfam03573, OprD, outer membrane porin, OprD family	NA|1567aa|down_2|NZ_CP016634.1_1607155_1611856_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|361aa|down_3|NZ_CP016634.1_1611937_1613020_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|511aa|down_4|NZ_CP016634.1_1613811_1615344_-	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase	NA|350aa|down_5|NZ_CP016634.1_1615633_1616683_+	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]	NA|379aa|down_6|NZ_CP016634.1_1616801_1617938_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|777aa|down_7|NZ_CP016634.1_1618072_1620403_-	cd01948, EAL, EAL domain	NA|292aa|down_8|NZ_CP016634.1_1620625_1621501_+	PRK04155, PRK04155, protein deglycase HchA	NA|329aa|down_9|NZ_CP016634.1_1621516_1622503_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase
GCF_002741075.1_IEC330191.0	NZ_CP016634	Pseudomonas putida strain IEC33019 chromosome, complete genome	3	2747654-2747756	3	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh,PD-DExK,casR	Orphan	GCACAACGCTTCGCCGAAGATGGCT	25	1	1	2747679-2747731	NZ_CP016634.1_2747718-2747770	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,PD-DExK,casR,RT	NA,NA|78aa|down_1|NZ_CP016634.1_2748551_2748785_-	NA|323aa|up_9|NZ_CP016634.1_2732138_2733107_-	pfam05277, DUF726, Protein of unknown function (DUF726)	NA|568aa|up_8|NZ_CP016634.1_2734127_2735831_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|339aa|up_7|NZ_CP016634.1_2735957_2736974_+	pfam16263, DUF4917, Domain of unknown function (DUF4917)	NA|406aa|up_6|NZ_CP016634.1_2737007_2738225_-	pfam13679, Methyltransf_32, Methyltransferase domain	NA|206aa|up_5|NZ_CP016634.1_2738325_2738943_-	COG3762, COG3762, Predicted membrane protein [Function unknown]	NA|764aa|up_4|NZ_CP016634.1_2739170_2741462_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|586aa|up_3|NZ_CP016634.1_2741639_2743397_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|445aa|up_2|NZ_CP016634.1_2743390_2744725_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|440aa|up_1|NZ_CP016634.1_2744988_2746308_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|250aa|up_0|NZ_CP016634.1_2746419_2747169_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|202aa|down_0|NZ_CP016634.1_2747945_2748551_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|78aa|down_1|NZ_CP016634.1_2748551_2748785_-	NA	NA|98aa|down_2|NZ_CP016634.1_2748897_2749191_-	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|306aa|down_3|NZ_CP016634.1_2749392_2750310_+	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|546aa|down_4|NZ_CP016634.1_2750489_2752127_-	PRK07524, PRK07524, 5-guanidino-2-oxopentanoate decarboxylase	NA|303aa|down_5|NZ_CP016634.1_2752239_2753148_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|205aa|down_6|NZ_CP016634.1_2753118_2753733_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|292aa|down_7|NZ_CP016634.1_2753760_2754636_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|302aa|down_8|NZ_CP016634.1_2754737_2755643_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|290aa|down_9|NZ_CP016634.1_2755673_2756543_-	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
GCF_002741075.1_IEC330191.0	NZ_CP016446	Pseudomonas putida strain IEC33019 plasmid pIEC33019, complete sequence	1	4303-4459	1	CRISPRCasFinder	no	RT	RT	Unclear	CGGTTCGTCACTCCAGGGACCGC	23	0	0	NA	NA	NA	3	3	Orphan	cas3,csa3,DinG,WYL,DEDDh,PD-DExK,casR,RT	NA|123aa|up_5|NZ_CP016446.1_20_389_+,NA|106aa|up_4|NZ_CP016446.1_421_739_+,NA|87aa|up_2|NZ_CP016446.1_1841_2102_+,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|123aa|up_5|NZ_CP016446.1_20_389_+	NA	NA|106aa|up_4|NZ_CP016446.1_421_739_+	NA	NA|363aa|up_3|NZ_CP016446.1_742_1831_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|87aa|up_2|NZ_CP016446.1_1841_2102_+	NA	NA|206aa|up_1|NZ_CP016446.1_2440_3058_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|up_0|NZ_CP016446.1_3044_4181_+	pfam10134, RPA, Replication initiator protein A	NA|255aa|down_0|NZ_CP016446.1_7934_8699_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|167aa|down_1|NZ_CP016446.1_9205_9706_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|280aa|down_2|NZ_CP016446.1_9833_10673_-	PRK13753, PRK13753, dihydropteroate synthase; Provisional	NA|116aa|down_3|NZ_CP016446.1_10666_11014_-	pfam00893, Multi_Drug_Res, Small Multidrug Resistance protein	NA|348aa|down_4|NZ_CP016446.1_11235_12279_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|280aa|down_5|NZ_CP016446.1_12518_13358_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|219aa|down_6|NZ_CP016446.1_13506_14163_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|246aa|down_7|NZ_CP016446.1_14508_15246_-	cd16301, IMP_DIM-like_MBL-B1, IMP-1, DIM-1, GIM-1, SIM-1, TMB-1 and related metallo-beta-lactamases, subclass B1; MBL-fold metallo-hydrolase domain	NA|338aa|down_8|NZ_CP016446.1_15398_16412_+	PRK15417, PRK15417, integron integrase	NA|187aa|down_9|NZ_CP016446.1_16846_17407_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain
