assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002736045.1_ASM273604v1	NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	1	1538248-1538367	1	CRISPRCasFinder	no		WYL,DEDDh,DinG,csa3,cas3	Orphan	GCCGTTCTCAAGGCCAGTGCTGCACCTGTG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,DinG,csa3,cas3	NA|107aa|up_2|NZ_CP024086.1_1536104_1536425_-,NA|263aa|down_0|NZ_CP024086.1_1538402_1539191_-,NA|177aa|down_7|NZ_CP024086.1_1544765_1545296_+,NA|64aa|down_9|NZ_CP024086.1_1546508_1546700_+	NA|466aa|up_9|NZ_CP024086.1_1528237_1529635_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|647aa|up_8|NZ_CP024086.1_1529752_1531693_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|397aa|up_7|NZ_CP024086.1_1531970_1533161_-	pfam03594, BenE, Benzoate membrane transport protein	NA|201aa|up_6|NZ_CP024086.1_1533306_1533909_+	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|122aa|up_5|NZ_CP024086.1_1534340_1534706_-	pfam00462, Glutaredoxin, Glutaredoxin	NA|182aa|up_4|NZ_CP024086.1_1534765_1535311_-	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed	NA|187aa|up_3|NZ_CP024086.1_1535380_1535941_-	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|107aa|up_2|NZ_CP024086.1_1536104_1536425_-	NA	NA|197aa|up_1|NZ_CP024086.1_1536514_1537105_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|303aa|up_0|NZ_CP024086.1_1537285_1538194_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|263aa|down_0|NZ_CP024086.1_1538402_1539191_-	NA	NA|321aa|down_1|NZ_CP024086.1_1539383_1540346_-	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|364aa|down_2|NZ_CP024086.1_1540590_1541682_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|385aa|down_3|NZ_CP024086.1_1541821_1542976_+	pfam12832, MFS_1_like, MFS_1 like family	NA|179aa|down_4|NZ_CP024086.1_1542975_1543512_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|91aa|down_5|NZ_CP024086.1_1543639_1543912_-	pfam12021, DUF3509, Protein of unknown function (DUF3509)	NA|176aa|down_6|NZ_CP024086.1_1544177_1544705_+	sd00045, ANK, ankyrin repeats	NA|177aa|down_7|NZ_CP024086.1_1544765_1545296_+	NA	NA|313aa|down_8|NZ_CP024086.1_1545443_1546382_-	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|64aa|down_9|NZ_CP024086.1_1546508_1546700_+	NA
GCF_002736045.1_ASM273604v1	NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	2	2388782-2388924	2	CRISPRCasFinder	no		WYL,DEDDh,DinG,csa3,cas3	Orphan	TGCGCTGACCCTGTGTAGGAGCAGCCTTGTGCTGCGAAGAGGCCGGTGAAAG	52	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,DinG,csa3,cas3	NA|121aa|up_5|NZ_CP024086.1_2384348_2384711_+,NA	NA|159aa|up_9|NZ_CP024086.1_2379623_2380100_-	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit	NA|428aa|up_8|NZ_CP024086.1_2380099_2381383_-	cd08879, RHO_alpha_C_AntDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases	NA|306aa|up_7|NZ_CP024086.1_2381724_2382642_-	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|390aa|up_6|NZ_CP024086.1_2383161_2384331_+	cd01159, NcnH, Naphthocyclinone hydroxylase	NA|121aa|up_5|NZ_CP024086.1_2384348_2384711_+	NA	NA|425aa|up_4|NZ_CP024086.1_2384726_2386001_+	cd08879, RHO_alpha_C_AntDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases	NA|159aa|up_3|NZ_CP024086.1_2386015_2386492_+	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit	NA|251aa|up_2|NZ_CP024086.1_2386502_2387255_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|320aa|up_1|NZ_CP024086.1_2387306_2388266_+	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|166aa|up_0|NZ_CP024086.1_2388277_2388775_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|160aa|down_0|NZ_CP024086.1_2389234_2389714_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|375aa|down_1|NZ_CP024086.1_2389887_2391012_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|171aa|down_2|NZ_CP024086.1_2391025_2391538_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|440aa|down_3|NZ_CP024086.1_2391579_2392899_-	pfam13372, Alginate_exp, Alginate export	NA|133aa|down_4|NZ_CP024086.1_2393081_2393480_-	COG3474, COG3474, Cytochrome c2 [Energy production and conversion]	NA|305aa|down_5|NZ_CP024086.1_2393598_2394513_-	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	NA|173aa|down_6|NZ_CP024086.1_2395175_2395694_-	pfam00034, Cytochrom_C, Cytochrome c	NA|174aa|down_7|NZ_CP024086.1_2395698_2396220_-	pfam02975, Me-amine-dh_L, Methylamine dehydrogenase, L chain	NA|214aa|down_8|NZ_CP024086.1_2396234_2396876_-	TIGR02661, Methylamine_utilization_protein_MauD, methylamine dehydrogenase accessory protein MauD	NA|179aa|down_9|NZ_CP024086.1_2396879_2397416_-	pfam07291, MauE, Methylamine utilisation protein MauE
GCF_002736045.1_ASM273604v1	NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	3	3767420-3767530	3	CRISPRCasFinder	no		WYL,DEDDh,DinG,csa3,cas3	Orphan	TTGTAGGAGCAGCCTTGCGCTGCGAAGAGGCCGGCA	36	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,DinG,csa3,cas3	NA|113aa|up_8|NZ_CP024086.1_3759436_3759775_+,NA	NA|418aa|up_9|NZ_CP024086.1_3757801_3759055_+	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|113aa|up_8|NZ_CP024086.1_3759436_3759775_+	NA	NA|478aa|up_7|NZ_CP024086.1_3759852_3761286_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|399aa|up_6|NZ_CP024086.1_3761278_3762475_-	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters	NA|153aa|up_5|NZ_CP024086.1_3762471_3762930_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|146aa|up_4|NZ_CP024086.1_3763129_3763567_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|339aa|up_3|NZ_CP024086.1_3763577_3764594_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|395aa|up_2|NZ_CP024086.1_3764762_3765947_+	PRK09051, PRK09051, beta-ketothiolase BktB	NA|283aa|up_1|NZ_CP024086.1_3765959_3766808_+	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|196aa|up_0|NZ_CP024086.1_3766820_3767408_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|126aa|down_0|NZ_CP024086.1_3767600_3767978_-	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase	NA|409aa|down_1|NZ_CP024086.1_3768022_3769249_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|192aa|down_2|NZ_CP024086.1_3769242_3769818_-	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|274aa|down_3|NZ_CP024086.1_3769814_3770636_-	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|1156aa|down_4|NZ_CP024086.1_3770632_3774100_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|117aa|down_5|NZ_CP024086.1_3774349_3774700_+	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase	NA|250aa|down_6|NZ_CP024086.1_3774867_3775617_-	PRK08284, PRK08284, precorrin 6A synthase; Provisional	NA|524aa|down_7|NZ_CP024086.1_3775778_3777350_+	cd00842, MPP_ASMase, acid sphingomyelinase and related proteins, metallophosphatase domain	NA|430aa|down_8|NZ_CP024086.1_3777441_3778731_-	pfam03573, OprD, outer membrane porin, OprD family	NA|120aa|down_9|NZ_CP024086.1_3779091_3779451_+	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT
GCF_002736045.1_ASM273604v1	NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	4	6096227-6096330	4	CRISPRCasFinder	no	cas3	WYL,DEDDh,DinG,csa3,cas3	Unclear	CCATACGCCGATCAGTGTGGGAGC	24	0	0	NA	NA	NA	1	1	Unclear	WYL,DEDDh,DinG,csa3,cas3	NA,NA	NA|244aa|up_9|NZ_CP024086.1_6086743_6087475_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|309aa|up_8|NZ_CP024086.1_6087569_6088496_+	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	cas3|693aa|up_7|NZ_CP024086.1_6088499_6090578_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|468aa|up_6|NZ_CP024086.1_6090656_6092060_+	COG1639, COG1639, Predicted signal transduction protein [Signal transduction mechanisms]	NA|125aa|up_5|NZ_CP024086.1_6092191_6092566_-	pfam02036, SCP2, SCP-2 sterol transfer family	NA|100aa|up_4|NZ_CP024086.1_6092713_6093013_-	cd13831, HU, histone-like DNA-binding protein HU	NA|383aa|up_3|NZ_CP024086.1_6093201_6094350_-	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|56aa|up_2|NZ_CP024086.1_6094384_6094552_-	COG1773, COG1773, Rubredoxin [Energy production and conversion]	NA|186aa|up_1|NZ_CP024086.1_6094721_6095279_+	pfam04345, Chor_lyase, Chorismate lyase	NA|297aa|up_0|NZ_CP024086.1_6095278_6096169_+	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|123aa|down_0|NZ_CP024086.1_6096371_6096740_-	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_1|NZ_CP024086.1_6096912_6097602_+	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	NA|436aa|down_2|NZ_CP024086.1_6097647_6098955_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|447aa|down_3|NZ_CP024086.1_6099094_6100435_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|299aa|down_4|NZ_CP024086.1_6100451_6101348_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|297aa|down_5|NZ_CP024086.1_6101560_6102451_-	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins	NA|257aa|down_6|NZ_CP024086.1_6102616_6103387_-	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|278aa|down_7|NZ_CP024086.1_6103481_6104315_-	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional	NA|557aa|down_8|NZ_CP024086.1_6104387_6106058_-	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]	NA|763aa|down_9|NZ_CP024086.1_6106075_6108364_-	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only]
