The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	6180967	299338	307324	6180967		Escherichia_phage(33.33%)	7	NA	NA
WP_027595203.1|299338_300748_-	sigma-54-dependent Fis family transcriptional regulator	NA	W8CYM9	Bacillus_phage	27.1	2.3e-08
WP_027595204.1|300744_302559_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_099428080.1|302597_303536_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	36.7	9.8e-32
WP_099428081.1|303454_304000_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.4	4.6e-50
WP_099428082.1|303996_304872_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	66.0	9.6e-106
WP_099428083.1|304868_305951_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	2.8e-99
WP_099428084.1|306217_307324_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	49.6	1.8e-101
>prophage 2
NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	6180967	325179	383069	6180967	integrase,transposase,holin	Bacillus_virus(50.0%)	50	318289:318316	346862:346889
318289:318316	attL	TGTAGGAGCAGCCTTGTGCTGCGAATGG	NA	NA	NA	NA
WP_172960333.1|325179_326073_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_027594254.1|327262_327511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033694190.1|327971_328265_+	DUF3077 domain-containing protein	NA	NA	NA	NA	NA
WP_099428096.1|328501_329713_-	methyltransferase	NA	NA	NA	NA	NA
WP_027594257.1|329846_330536_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_099428097.1|330532_331228_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_099428098.1|331282_332044_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_085273850.1|332057_332831_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.4	1.4e-20
WP_027594261.1|333448_334834_+	GABA permease	NA	NA	NA	NA	NA
WP_027594262.1|335040_335484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033694195.1|335637_336147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099428099.1|336156_337152_-	polyphosphate kinase 2	NA	NA	NA	NA	NA
WP_085273848.1|337346_337553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027594266.1|337880_338153_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_099428100.1|338149_339217_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_099428101.1|339213_341463_-	AsmA family protein	NA	NA	NA	NA	NA
WP_027594269.1|341892_343554_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_027594270.1|343796_344390_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_027594271.1|344390_345029_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_027594272.1|345029_345290_+	DUF2164 domain-containing protein	NA	NA	NA	NA	NA
WP_016484508.1|345317_346055_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
WP_027594274.1|346065_346836_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_027594275.1|346956_348135_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	37.2	1.0e-25
346862:346889	attR	CCATTCGCAGCACAAGGCTGCTCCTACA	NA	NA	NA	NA
WP_172960399.1|348131_348980_-|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_099428102.1|349061_350009_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_099428103.1|350462_351839_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_027594279.1|352234_353341_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_027594280.1|353541_354042_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_099428104.1|354142_355105_+	FecR family protein	NA	NA	NA	NA	NA
WP_099428105.1|355313_358127_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_099430851.1|358153_360922_+	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	23.8	1.0e-07
WP_099428106.1|360918_362574_+	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA	NA
WP_027594285.1|362826_363084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099430852.1|363455_365099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099428107.1|365147_365621_-	thioesterase family protein	NA	NA	NA	NA	NA
WP_099428108.1|365631_366597_-	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
WP_099428109.1|366614_367499_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_099428110.1|367620_368565_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_099428111.1|368712_369657_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_027594291.1|369715_370117_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_027594292.1|370402_371380_+	membrane dipeptidase	NA	NA	NA	NA	NA
WP_027594293.1|371457_371988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027594294.1|372003_374064_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
WP_099428112.1|374241_376194_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
WP_085273836.1|376193_377426_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_027594297.1|377436_378207_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
WP_099428113.1|378743_379634_+	RHS repeat-associated core domain-containing protein	NA	A0A1W5K0N1	Bacteriophage	50.5	7.4e-21
WP_027594299.1|379788_381081_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA	NA
WP_027594300.1|381376_382477_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA	NA
WP_099428114.1|382613_383069_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	6180967	1087745	1095510	6180967		Thermobifida_phage(16.67%)	10	NA	NA
WP_027595604.1|1087745_1088600_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.9	5.3e-08
WP_027595605.1|1088602_1089067_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_003255135.1|1089079_1089388_-	ribosome-associated translation inhibitor RaiA	NA	A0A0K1LP60	Escherichia_phage	34.1	4.4e-05
WP_027595606.1|1089467_1090961_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_027595607.1|1091136_1091862_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	8.4e-23
WP_027595608.1|1091862_1092387_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_027595609.1|1092373_1092946_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_099428395.1|1092954_1093479_-	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	48.1	3.1e-27
WP_027595611.1|1093479_1094454_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.9	8.9e-36
WP_016501329.1|1094700_1095510_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.5	3.4e-25
>prophage 4
NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	6180967	2062387	2070960	6180967	tRNA	uncultured_Caudovirales_phage(75.0%)	10	NA	NA
WP_085273003.1|2062387_2063668_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.5	2.2e-95
WP_027592727.1|2063668_2065060_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_099428817.1|2065175_2066138_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_099428818.1|2066232_2067234_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	79.0	1.1e-153
WP_027592724.1|2067230_2067566_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	78.4	4.0e-44
WP_099428819.1|2067562_2067859_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	62.6	1.3e-25
WP_027592722.1|2067858_2068218_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	66.7	8.6e-37
WP_099428820.1|2068219_2068612_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	81.4	7.6e-55
WP_033696754.1|2068729_2070109_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	1.3e-27
WP_003251184.1|2070288_2070960_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.0	2.1e-105
>prophage 5
NZ_CP024086	Pseudomonas putida strain E46 chromosome, complete genome	6180967	3952920	4011972	6180967	transposase,coat	uncultured_Caudovirales_phage(25.0%)	43	NA	NA
WP_099430853.1|3952920_3953979_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_099429885.1|3954346_3955537_-	MFS transporter	NA	NA	NA	NA	NA
WP_099429886.1|3955656_3956562_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_027593866.1|3956546_3957467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_027593867.1|3957627_3958404_+	YqcI/YcgG family protein	NA	NA	NA	NA	NA
WP_099429887.1|3958406_3959033_+	LysE family translocator	NA	NA	NA	NA	NA
WP_099429888.1|3959058_3960153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099429889.1|3960309_3961005_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_027593871.1|3961095_3961797_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_099429890.1|3961793_3962108_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_085273250.1|3962104_3962938_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_027593874.1|3963014_3963242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099429891.1|3963277_3963766_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_027593876.1|3963765_3964374_-	SCO family protein	NA	NA	NA	NA	NA
WP_012271640.1|3964588_3965173_-	Fe-S biogenesis protein NfuA	NA	NA	NA	NA	NA
WP_099429892.1|3965231_3966266_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	32.6	2.8e-19
WP_027593878.1|3966502_3968812_-	fatty acid cis/trans isomerase	NA	NA	NA	NA	NA
WP_099429893.1|3968978_3972686_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	68.3	1.0e-15
WP_099429894.1|3972850_3973069_+	DUF2970 domain-containing protein	NA	NA	NA	NA	NA
WP_099429895.1|3973357_3978094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099429896.1|3978168_3979245_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_099429897.1|3979460_3981113_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_027593883.1|3981096_3981591_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_099429898.1|3981663_3986880_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_157765565.1|3986970_3990999_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_172960372.1|3991062_3995490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172960373.1|3995520_3995850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099429901.1|3996807_3997611_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	36.6	1.6e-35
WP_099429902.1|3997758_3998940_+	MFS transporter	NA	NA	NA	NA	NA
WP_027593888.1|3999326_3999791_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_027593889.1|3999805_4001161_-	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	23.2	2.1e-11
WP_099429903.1|4001157_4001871_-	response regulator	NA	NA	NA	NA	NA
WP_099429904.1|4002039_4002822_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_099429905.1|4002814_4003057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099429906.1|4003190_4004156_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_099429907.1|4004365_4005514_+	carboxypeptidase family protein	NA	NA	NA	NA	NA
WP_099429908.1|4005631_4006600_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_099429909.1|4006596_4008942_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_099429910.1|4009002_4009779_-	molecular chaperone	NA	NA	NA	NA	NA
WP_027593898.1|4009818_4010322_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_027593899.1|4010325_4010859_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_099429911.1|4010877_4011414_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_099429912.1|4011444_4011972_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
