assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002706745.1_ASM270674v1	NZ_CP017702	Lactobacillus farciminis KCTC 3681 = DSM 20184, complete genome	1	188690-189255	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	Type II-C,Type II-B,Type II-A	AGGTTCTTAAGTAAATAGAAAGACATACTTCTAAAAC,AGGTTCTTAAGTAAANAGAAAGACATACTTCTAAAAC,AGGTTCTT--------AAGTAAATAGAAAGACATACTTCTAAAAC	37,37,45	0	0	NA	NA	NA:NA:NA	8,8,7	8	TypeII-C,TypeII-B,TypeII-A	csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	NA|74aa|up_5|NZ_CP017702.1_184291_184513_+,NA|106aa|down_8|NZ_CP017702.1_198418_198736_-	NA|287aa|up_9|NZ_CP017702.1_179631_180492_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|115aa|up_8|NZ_CP017702.1_180515_180860_+	cd00215, PTS_IIA_lac, PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit	NA|477aa|up_7|NZ_CP017702.1_180873_182304_+	PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional	NA|584aa|up_6|NZ_CP017702.1_182437_184189_+	TIGR00394, lac_pts_IIC, phosphotransferase system, lactose specific, IIC component	NA|74aa|up_5|NZ_CP017702.1_184291_184513_+	NA	NA|380aa|up_4|NZ_CP017702.1_184547_185687_-	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|220aa|up_3|NZ_CP017702.1_185923_186583_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|220aa|up_2|NZ_CP017702.1_186626_187286_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|207aa|up_1|NZ_CP017702.1_187396_188017_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|148aa|up_0|NZ_CP017702.1_188021_188465_+	PRK06703, PRK06703, flavodoxin; Provisional	csn2|235aa|down_0|NZ_CP017702.1_189275_189980_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP017702.1_189976_190282_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|293aa|down_2|NZ_CP017702.1_190286_191165_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1357aa|down_3|NZ_CP017702.1_191322_195393_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|189aa|down_4|NZ_CP017702.1_195585_196152_+	pfam10211, Ax_dynein_light, Axonemal dynein light chain	NA|275aa|down_5|NZ_CP017702.1_196151_196976_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|134aa|down_6|NZ_CP017702.1_197009_197411_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|245aa|down_7|NZ_CP017702.1_197433_198168_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|106aa|down_8|NZ_CP017702.1_198418_198736_-	NA	NA|332aa|down_9|NZ_CP017702.1_198859_199855_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed
GCF_002706745.1_ASM270674v1	NZ_CP017702	Lactobacillus farciminis KCTC 3681 = DSM 20184, complete genome	2	1561622-1561756	2	CRISPRCasFinder	no		csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	Orphan	CTAAGTGATCTCGCCTAATTTAATAGTAACAACTCACT	38	0	0	NA	NA	NA	1	1	Orphan	csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	NA,NA	NA|287aa|up_9|NZ_CP017702.1_1550547_1551408_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|271aa|up_8|NZ_CP017702.1_1551506_1552319_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|476aa|up_7|NZ_CP017702.1_1552475_1553903_-	PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional	NA|579aa|up_6|NZ_CP017702.1_1553899_1555636_-	TIGR00394, lac_pts_IIC, phosphotransferase system, lactose specific, IIC component	NA|117aa|up_5|NZ_CP017702.1_1555690_1556041_-	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]	NA|285aa|up_4|NZ_CP017702.1_1556054_1556909_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|474aa|up_3|NZ_CP017702.1_1557175_1558597_-	PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional	NA|566aa|up_2|NZ_CP017702.1_1558610_1560308_-	TIGR00394, lac_pts_IIC, phosphotransferase system, lactose specific, IIC component	NA|117aa|up_1|NZ_CP017702.1_1560326_1560677_-	cd00215, PTS_IIA_lac, PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit	NA|284aa|up_0|NZ_CP017702.1_1560690_1561542_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|273aa|down_0|NZ_CP017702.1_1561852_1562671_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|427aa|down_1|NZ_CP017702.1_1562753_1564034_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|436aa|down_2|NZ_CP017702.1_1564408_1565716_+	cd01303, GDEase, Guanine deaminase (GDEase)	NA|447aa|down_3|NZ_CP017702.1_1565715_1567056_+	TIGR03173, pbuX, xanthine permease	NA|377aa|down_4|NZ_CP017702.1_1567093_1568224_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|377aa|down_5|NZ_CP017702.1_1568363_1569494_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|387aa|down_6|NZ_CP017702.1_1569623_1570784_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|362aa|down_7|NZ_CP017702.1_1570838_1571924_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|435aa|down_8|NZ_CP017702.1_1571945_1573250_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|259aa|down_9|NZ_CP017702.1_1573386_1574163_-	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_002706745.1_ASM270674v1	NZ_CP017702	Lactobacillus farciminis KCTC 3681 = DSM 20184, complete genome	3	1660448-1660530	3	CRISPRCasFinder	no		csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	Orphan	ATAACATTCTCTAACCGGCATAGCC	25	0	0	NA	NA	NA	1	1	Orphan	csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	NA,NA|93aa|down_6|NZ_CP017702.1_1668181_1668460_+	NA|39aa|up_9|NZ_CP017702.1_1650801_1650918_+	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|197aa|up_8|NZ_CP017702.1_1650979_1651570_-	pfam09515, Thia_YuaJ, Thiamine transporter protein (Thia_YuaJ)	NA|266aa|up_7|NZ_CP017702.1_1651752_1652550_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|213aa|up_6|NZ_CP017702.1_1652572_1653211_-	PRK00513, minC, septum formation inhibitor; Reviewed	NA|181aa|up_5|NZ_CP017702.1_1653207_1653750_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|287aa|up_4|NZ_CP017702.1_1653749_1654610_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|334aa|up_3|NZ_CP017702.1_1654655_1655657_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|213aa|up_2|NZ_CP017702.1_1655751_1656390_-	PRK00024, PRK00024, DNA repair protein RadC	NA|422aa|up_1|NZ_CP017702.1_1656399_1657665_-	TIGR01499, Folylpolyglutamate_synthase, folylpolyglutamate synthase/dihydrofolate synthase	NA|883aa|up_0|NZ_CP017702.1_1657737_1660386_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|406aa|down_0|NZ_CP017702.1_1660787_1662005_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|382aa|down_1|NZ_CP017702.1_1662014_1663160_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|545aa|down_2|NZ_CP017702.1_1663236_1664871_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|204aa|down_3|NZ_CP017702.1_1665245_1665857_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|202aa|down_4|NZ_CP017702.1_1666230_1666836_-	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|435aa|down_5|NZ_CP017702.1_1666887_1668192_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|93aa|down_6|NZ_CP017702.1_1668181_1668460_+	NA	NA|158aa|down_7|NZ_CP017702.1_1668547_1669021_+	pfam00582, Usp, Universal stress protein family	NA|286aa|down_8|NZ_CP017702.1_1669100_1669958_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|99aa|down_9|NZ_CP017702.1_1670061_1670358_-	cd06848, GCS_H, Glycine cleavage H-protein
GCF_002706745.1_ASM270674v1	NZ_CP017702	Lactobacillus farciminis KCTC 3681 = DSM 20184, complete genome	4	1973455-1973819	2,2,4	CRT,PILER-CR,CRISPRCasFinder	no	csn2,cas2,cas1,cas9	csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	Type II-C,Type II-B,Type II-A	NGTTTTACTATTTCTAGATTCTTTAAGGTACAAAAAC,GTTTTTGTACCTTAAAGAATCTAGAAA-------TAGTAAAAC,GTTTTACTATTTCTAGATTCTTTAAGGTACAAAAAC	37,43,36	0	0	NA	NA	NA:NA:NA	5,4,4	5	TypeII-C,TypeII-B,TypeII-A	csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	NA|165aa|up_3|NZ_CP017702.1_1970804_1971299_-,NA|57aa|up_2|NZ_CP017702.1_1971341_1971512_-,NA	NA|209aa|up_9|NZ_CP017702.1_1962871_1963498_+	pfam02517, Abi, CAAX protease self-immunity	NA|427aa|up_8|NZ_CP017702.1_1963582_1964863_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|323aa|up_7|NZ_CP017702.1_1965622_1966591_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|217aa|up_6|NZ_CP017702.1_1966611_1967262_-	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|638aa|up_5|NZ_CP017702.1_1967400_1969314_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|282aa|up_4|NZ_CP017702.1_1969928_1970774_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|165aa|up_3|NZ_CP017702.1_1970804_1971299_-	NA	NA|57aa|up_2|NZ_CP017702.1_1971341_1971512_-	NA	NA|448aa|up_1|NZ_CP017702.1_1971656_1973000_-	PRK05313, PRK05313, hypothetical protein; Provisional	NA|89aa|up_0|NZ_CP017702.1_1973011_1973278_-	PRK00194, PRK00194, ACT domain-containing protein	csn2|256aa|down_0|NZ_CP017702.1_1973846_1974614_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	NA|306aa|down_1|NZ_CP017702.1_1974658_1975576_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|225aa|down_2|NZ_CP017702.1_1975548_1976223_-	pfam13518, HTH_28, Helix-turn-helix domain	csn2|103aa|down_3|NZ_CP017702.1_1976254_1976563_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	cas2|103aa|down_4|NZ_CP017702.1_1976559_1976868_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|down_5|NZ_CP017702.1_1976879_1977788_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1127aa|down_6|NZ_CP017702.1_1977969_1981350_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|334aa|down_7|NZ_CP017702.1_1981482_1982484_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|178aa|down_8|NZ_CP017702.1_1982516_1983050_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|241aa|down_9|NZ_CP017702.1_1983033_1983756_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ
GCF_002706745.1_ASM270674v1	NZ_CP017702	Lactobacillus farciminis KCTC 3681 = DSM 20184, complete genome	5	2368940-2369024	5	CRISPRCasFinder	no		csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	Orphan	CTTAGAAACAGTTATGGGGAAGCTT	25	0	0	NA	NA	NA	1	1	Orphan	csn2,cas2,cas1,cas9,DEDDh,WYL,cas14j,csa3,cas3,DinG	NA|263aa|up_9|NZ_CP017702.1_2355705_2356494_-,NA	NA|263aa|up_9|NZ_CP017702.1_2355705_2356494_-	NA	NA|259aa|up_8|NZ_CP017702.1_2356629_2357406_-	pfam02424, ApbE, ApbE family	NA|431aa|up_7|NZ_CP017702.1_2357756_2359049_-	TIGR03173, pbuX, xanthine permease	NA|479aa|up_6|NZ_CP017702.1_2359173_2360610_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|157aa|up_5|NZ_CP017702.1_2360693_2361164_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|306aa|up_4|NZ_CP017702.1_2361347_2362265_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|331aa|up_3|NZ_CP017702.1_2362648_2363641_+	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|336aa|up_2|NZ_CP017702.1_2363755_2364763_+	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains	NA|335aa|up_1|NZ_CP017702.1_2364872_2365877_+	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains	NA|822aa|up_0|NZ_CP017702.1_2366080_2368546_+	pfam18483, Bact_lectin, Bacterial lectin	NA|376aa|down_0|NZ_CP017702.1_2369115_2370243_+	PRK06233, PRK06233, vitamin B12 independent methionine synthase	NA|129aa|down_1|NZ_CP017702.1_2370471_2370858_+	COG5294, COG5294, Uncharacterized protein conserved in bacteria [Function unknown]	NA|379aa|down_2|NZ_CP017702.1_2372418_2373555_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|488aa|down_3|NZ_CP017702.1_2373918_2375382_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|295aa|down_4|NZ_CP017702.1_2375477_2376362_-	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|338aa|down_5|NZ_CP017702.1_2376370_2377384_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|262aa|down_6|NZ_CP017702.1_2377386_2378172_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|279aa|down_7|NZ_CP017702.1_2378168_2379005_-	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|361aa|down_8|NZ_CP017702.1_2379018_2380101_-	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|310aa|down_9|NZ_CP017702.1_2380378_2381308_-	cd06533, Glyco_transf_WecG_TagA, The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins
