assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	1	371619-371720	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP017677.1_363178_363388_-,NA|128aa|up_6|NZ_CP017677.1_364212_364596_-,NA|33aa|up_0|NZ_CP017677.1_370843_370942_+,NA|221aa|down_1|NZ_CP017677.1_372810_373473_-,NA|179aa|down_7|NZ_CP017677.1_379564_380101_-	NA|84aa|up_9|NZ_CP017677.1_362888_363140_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP017677.1_363178_363388_-	NA	NA|194aa|up_7|NZ_CP017677.1_363565_364147_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP017677.1_364212_364596_-	NA	NA|209aa|up_5|NZ_CP017677.1_364865_365492_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP017677.1_365935_367459_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP017677.1_367474_368044_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP017677.1_368535_369291_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP017677.1_369370_370759_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP017677.1_370843_370942_+	NA	NA|319aa|down_0|NZ_CP017677.1_371736_372693_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP017677.1_372810_373473_-	NA	NA|136aa|down_2|NZ_CP017677.1_373615_374023_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP017677.1_374535_375114_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP017677.1_375113_376382_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP017677.1_376419_377886_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP017677.1_377910_379452_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP017677.1_379564_380101_-	NA	NA|235aa|down_8|NZ_CP017677.1_380492_381197_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP017677.1_381595_381868_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2	727725-727807	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|34aa|down_1|NZ_CP017677.1_729462_729564_+,NA|52aa|down_8|NZ_CP017677.1_737410_737566_+	NA|237aa|up_9|NZ_CP017677.1_713112_713823_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_8|NZ_CP017677.1_713806_714811_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_7|NZ_CP017677.1_715284_717225_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_6|NZ_CP017677.1_717494_719378_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_5|NZ_CP017677.1_719389_721171_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|440aa|up_4|NZ_CP017677.1_721335_722655_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|326aa|up_3|NZ_CP017677.1_722912_723890_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP017677.1_723882_725397_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP017677.1_725636_726695_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP017677.1_727033_727576_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP017677.1_728454_729372_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP017677.1_729462_729564_+	NA	NA|502aa|down_2|NZ_CP017677.1_729641_731147_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP017677.1_731487_731988_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP017677.1_732007_732874_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP017677.1_733674_734073_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP017677.1_734035_736141_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP017677.1_736258_737230_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP017677.1_737410_737566_+	NA	NA|324aa|down_9|NZ_CP017677.1_737604_738576_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	3	768672-768750	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	768696-768726|768696-768726|768696-768726	NZ_CP017677.1_258107-258077|NZ_CP017677.1_258052-258022|NZ_CP017677.1_1608689-1608719	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP017677.1_759548_759653_+,NA|36aa|up_5|NZ_CP017677.1_761085_761193_+,NA	NA|191aa|up_9|NZ_CP017677.1_755989_756562_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP017677.1_756975_759507_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP017677.1_759548_759653_+	NA	NA|370aa|up_6|NZ_CP017677.1_759821_760932_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP017677.1_761085_761193_+	NA	NA|280aa|up_4|NZ_CP017677.1_761340_762180_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP017677.1_762353_763004_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP017677.1_763000_763237_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP017677.1_763505_765491_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP017677.1_765498_768345_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP017677.1_769008_769941_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP017677.1_769946_770786_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP017677.1_770793_771279_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP017677.1_771286_772726_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP017677.1_772792_773728_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP017677.1_774481_775393_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP017677.1_775389_776385_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP017677.1_776495_777440_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP017677.1_778003_778591_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP017677.1_778833_779736_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	4	774115-774205	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	15	774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172|774148-774172	NZ_CP017677.1_134831-134807|NZ_CP017677.1_134889-134865|NZ_CP017677.1_258023-257999|NZ_CP017677.1_258133-258109|NZ_CP017677.1_599371-599347|NZ_CP017677.1_726766-726790|NZ_CP017677.1_832697-832721|NZ_CP017677.1_1301176-1301152|NZ_CP017677.1_1389707-1389731|NZ_CP017677.1_1571285-1571309|NZ_CP017677.1_1585840-1585816|NZ_CP017677.1_1900302-1900326|NZ_CP017677.1_258078-258054|NZ_CP017677.1_901219-901243|NZ_CP017677.1_1608544-1608568	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP017677.1_761340_762180_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP017677.1_762353_763004_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP017677.1_763000_763237_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP017677.1_763505_765491_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP017677.1_765498_768345_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP017677.1_769008_769941_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP017677.1_769946_770786_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP017677.1_770793_771279_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP017677.1_771286_772726_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP017677.1_772792_773728_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP017677.1_774481_775393_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP017677.1_775389_776385_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP017677.1_776495_777440_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP017677.1_778003_778591_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP017677.1_778833_779736_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP017677.1_780438_781068_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP017677.1_781880_782894_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP017677.1_782946_783957_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP017677.1_784095_785286_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP017677.1_785407_786169_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	5	832624-832705	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	832648-832681	NZ_CP017677.1_1301284-1301251	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP017677.1_831526_831640_+,NA	NA|206aa|up_9|NZ_CP017677.1_826380_826998_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP017677.1_827152_827647_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP017677.1_828045_828468_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP017677.1_828615_829332_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP017677.1_829414_829954_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP017677.1_830104_830425_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP017677.1_830568_830925_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP017677.1_831082_831463_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP017677.1_831526_831640_+	NA	NA|293aa|up_0|NZ_CP017677.1_831641_832520_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP017677.1_833316_833703_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP017677.1_833695_833992_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP017677.1_834241_835267_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP017677.1_835259_835955_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP017677.1_835972_836794_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP017677.1_837147_837342_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP017677.1_837575_838427_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP017677.1_838754_839516_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP017677.1_839613_840921_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP017677.1_841035_842277_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	6	1571209-1571293	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1571235-1571267|1571235-1571267	NZ_CP017677.1_134939-134907|NZ_CP017677.1_1301284-1301252	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP017677.1_1560418_1561102_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP017677.1_1561345_1561522_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP017677.1_1561814_1563161_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP017677.1_1563167_1563920_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP017677.1_1563921_1564860_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP017677.1_1564863_1566003_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP017677.1_1566138_1567971_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP017677.1_1568039_1568666_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP017677.1_1568697_1569675_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP017677.1_1569775_1570900_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP017677.1_1571465_1573289_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP017677.1_1573634_1573886_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP017677.1_1573930_1574905_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP017677.1_1574961_1577109_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP017677.1_1577167_1577629_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP017677.1_1577720_1578407_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP017677.1_1578446_1579163_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP017677.1_1579165_1579519_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP017677.1_1579519_1580104_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP017677.1_1580093_1580663_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	7	2001680-2001761	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	4	2001704-2001737|2001704-2001737|2001704-2001737|2001704-2001737	NZ_CP017677.1_768671-768704|NZ_CP017677.1_1694205-1694172|NZ_CP017677.1_1305625-1305658|NZ_CP017677.1_2689168-2689201	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|103aa|up_9|NZ_CP017677.1_1992865_1993174_-,NA|61aa|up_6|NZ_CP017677.1_1994467_1994650_+,NA|49aa|up_5|NZ_CP017677.1_1994685_1994832_+,NA|205aa|up_4|NZ_CP017677.1_1994828_1995443_-,NA	NA|103aa|up_9|NZ_CP017677.1_1992865_1993174_-	NA	NA|73aa|up_8|NZ_CP017677.1_1993188_1993407_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|240aa|up_7|NZ_CP017677.1_1993548_1994268_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|61aa|up_6|NZ_CP017677.1_1994467_1994650_+	NA	NA|49aa|up_5|NZ_CP017677.1_1994685_1994832_+	NA	NA|205aa|up_4|NZ_CP017677.1_1994828_1995443_-	NA	NA|346aa|up_3|NZ_CP017677.1_1995550_1996588_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP017677.1_1997706_1998723_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP017677.1_1998744_1999800_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP017677.1_2000235_2001459_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP017677.1_2001902_2003210_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP017677.1_2003749_2005366_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP017677.1_2005441_2005726_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP017677.1_2005900_2006644_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP017677.1_2006668_2007928_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP017677.1_2008124_2008751_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP017677.1_2009111_2009897_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP017677.1_2010496_2010631_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP017677.1_2010866_2011430_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP017677.1_2011432_2011576_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	8	2129420-2129500	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP017677.1_2124294_2124525_-,NA|364aa|up_0|NZ_CP017677.1_2128311_2129403_+,NA|35aa|down_0|NZ_CP017677.1_2129835_2129940_-,NA|53aa|down_1|NZ_CP017677.1_2130619_2130778_+	NA|237aa|up_9|NZ_CP017677.1_2119905_2120616_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP017677.1_2120736_2121180_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP017677.1_2121379_2121793_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP017677.1_2122249_2123623_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP017677.1_2124294_2124525_-	NA	NA|313aa|up_4|NZ_CP017677.1_2124555_2125494_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP017677.1_2125929_2126595_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP017677.1_2126746_2127067_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP017677.1_2127068_2128046_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP017677.1_2128311_2129403_+	NA	NA|35aa|down_0|NZ_CP017677.1_2129835_2129940_-	NA	NA|53aa|down_1|NZ_CP017677.1_2130619_2130778_+	NA	NA|286aa|down_2|NZ_CP017677.1_2131435_2132293_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP017677.1_2132360_2133143_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP017677.1_2133374_2135180_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP017677.1_2135860_2137399_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP017677.1_2137433_2139566_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP017677.1_2139577_2140012_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP017677.1_2140011_2141118_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP017677.1_2141436_2148882_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	9	2141741-2141826	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP017677.1_2128311_2129403_+,NA|35aa|up_8|NZ_CP017677.1_2129835_2129940_-,NA|53aa|up_7|NZ_CP017677.1_2130619_2130778_+,NA	NA|364aa|up_9|NZ_CP017677.1_2128311_2129403_+	NA	NA|35aa|up_8|NZ_CP017677.1_2129835_2129940_-	NA	NA|53aa|up_7|NZ_CP017677.1_2130619_2130778_+	NA	NA|286aa|up_6|NZ_CP017677.1_2131435_2132293_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP017677.1_2132360_2133143_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP017677.1_2133374_2135180_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP017677.1_2135860_2137399_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP017677.1_2137433_2139566_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP017677.1_2139577_2140012_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP017677.1_2140011_2141118_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP017677.1_2149159_2150515_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP017677.1_2150541_2151474_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP017677.1_2151475_2152285_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP017677.1_2152473_2153382_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP017677.1_2159622_2160687_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP017677.1_2160834_2162277_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP017677.1_2162599_2163073_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP017677.1_2163171_2164515_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP017677.1_2164691_2165375_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP017677.1_2165393_2166581_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_002633865.1_ASM263386v1	NZ_CP017677	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	10	2249784-2249864	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839|2249809-2249839	NZ_CP017677.1_781283-781313|NZ_CP017677.1_781339-781369|NZ_CP017677.1_36454-36484|NZ_CP017677.1_332911-332881|NZ_CP017677.1_599435-599405|NZ_CP017677.1_781395-781425|NZ_CP017677.1_832960-832990|NZ_CP017677.1_997217-997247|NZ_CP017677.1_1093616-1093586|NZ_CP017677.1_1301240-1301210|NZ_CP017677.1_1389643-1389673|NZ_CP017677.1_1389759-1389789|NZ_CP017677.1_1585903-1585873|NZ_CP017677.1_1898954-1898984|NZ_CP017677.1_2239008-2239038|NZ_CP017677.1_2414492-2414522	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP017677.1_2240317_2240482_+,NA|106aa|up_8|NZ_CP017677.1_2240726_2241044_+,NA|84aa|up_5|NZ_CP017677.1_2246165_2246417_+,NA|62aa|up_0|NZ_CP017677.1_2249556_2249742_+,NA	NA|55aa|up_9|NZ_CP017677.1_2240317_2240482_+	NA	NA|106aa|up_8|NZ_CP017677.1_2240726_2241044_+	NA	NA|1056aa|up_7|NZ_CP017677.1_2241227_2244395_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP017677.1_2244511_2245777_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP017677.1_2246165_2246417_+	NA	NA|255aa|up_4|NZ_CP017677.1_2246408_2247173_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP017677.1_2247334_2247775_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP017677.1_2247767_2248979_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP017677.1_2249080_2249431_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP017677.1_2249556_2249742_+	NA	NA|341aa|down_0|NZ_CP017677.1_2250007_2251030_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP017677.1_2251049_2251649_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP017677.1_2251655_2251889_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP017677.1_2251894_2252341_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP017677.1_2252354_2252840_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP017677.1_2252836_2254096_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP017677.1_2254158_2254653_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP017677.1_2254654_2255161_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP017677.1_2255191_2256196_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP017677.1_2256365_2256971_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
