The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	703388	711207	2758960		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|703388_704444_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|704443_705130_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|705104_705578_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|705918_706359_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|706638_707223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|707321_708035_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|708038_708458_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|708459_709128_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|709478_710072_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217797.1|710055_711207_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	723188	737698	2758960		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663039.1|723188_724247_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000197262.1|724405_724948_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429011.1|725555_726473_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_031760357.1|726565_726667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|726744_728250_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|728589_729090_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|729109_729976_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|730776_731175_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|731137_733243_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562499.1|733360_734332_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.0	2.7e-170
WP_000499195.1|734831_734987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|735025_735997_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245572.1|735983_736940_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616873.1|736936_737698_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	832887	854390	2758960	integrase,terminase,coat	Staphylococcus_phage(77.78%)	33	831194:831215	851858:851879
831194:831215	attL	AGGGAGTGGGACAGAAATGATA	NA	NA	NA	NA
WP_000571213.1|832887_833913_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520233.1|833905_834601_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732334.1|834618_835440_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266157.1|835582_836803_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733774.1|836891_837620_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_001033316.1|837643_838372_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_001228759.1|838441_838873_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|838889_839348_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|839359_839692_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|839884_840148_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|840140_840413_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|840424_840571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|840563_840773_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|840775_841096_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|841159_842029_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390454.1|842045_843515_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
WP_001039168.1|843800_844163_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|844164_844449_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|844445_845087_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|845603_845945_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|845956_846535_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|846552_846771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|846821_847349_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_045181470.1|847480_847693_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293067.1|847689_848259_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|848566_849367_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|849444_850002_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|850375_850528_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|850598_850709_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|850695_850896_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000752917.1|852020_852215_+	CsbD family protein	NA	NA	NA	NA	NA
851858:851879	attR	TATCATTTCTGTCCCACTCCCT	NA	NA	NA	NA
WP_001183851.1|852448_853300_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|853628_854390_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	942791	986509	2758960	holin,bacteriocin,tRNA,protease,transposase	Streptococcus_phage(33.33%)	39	NA	NA
WP_000277723.1|942791_944438_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	1.6e-292
WP_000448937.1|944463_945453_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|945747_946143_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|946513_947233_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959298.1|947353_948340_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|948387_950196_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|950655_951462_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|951484_951850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|951953_952547_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|952732_953080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|953096_953732_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|953748_954558_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669925.1|954554_955409_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|955429_956815_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395162.1|956824_958669_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933194.1|958947_959718_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|959914_961000_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570701.1|961341_962910_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_020977136.1|963052_963811_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060547.1|963976_964702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355328.1|964703_965555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|966289_966799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001824107.1|966911_968120_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|968079_969255_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340127.1|969687_971172_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|971152_971413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049957.1|971412_972975_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|973276_974080_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078064575.1|974295_976620_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|976636_977995_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414178.1|978133_979645_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|980133_980703_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|980912_981131_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|981211_982198_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|982396_982573_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|982587_983190_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014363402.1|983585_985232_+|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.3	3.7e-292
WP_099112139.1|985515_985593_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_029656376.1|986242_986509_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	1020690	1029163	2758960		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1020690_1021173_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010401.1|1021159_1022284_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174047.1|1022287_1022992_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_000848350.1|1022991_1023255_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1023256_1023928_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032747.1|1023920_1026110_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483727.1|1026088_1027573_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000030818.1|1027565_1028594_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238670.1|1028596_1029163_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	1063029	1140972	2758960	holin,portal,head,tRNA,transposase,plate,tail,terminase,capsid	Staphylococcus_phage(75.81%)	92	NA	NA
WP_000277723.1|1063029_1064676_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	1.6e-292
WP_064128952.1|1064796_1065282_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	3.8e-19
WP_000170598.1|1065418_1066033_-	YktB family protein	NA	NA	NA	NA	NA
WP_001240322.1|1066189_1067017_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_000810617.1|1067170_1067362_-	YlaF family protein	NA	NA	NA	NA	NA
WP_000182659.1|1067463_1069311_+	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
WP_001250275.1|1069450_1069618_-	YlaI family protein	NA	NA	NA	NA	NA
WP_000614711.1|1069619_1070102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001118970.1|1070242_1070518_+	YlaN family protein	NA	NA	NA	NA	NA
WP_000787940.1|1070831_1072058_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_000809507.1|1072611_1076064_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_000467121.1|1076147_1077059_-	heme A synthase	NA	NA	NA	NA	NA
WP_000031405.1|1077498_1078410_+	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
WP_000538768.1|1078434_1078896_+	DUF420 domain-containing protein	NA	NA	NA	NA	NA
WP_000733412.1|1079217_1080255_+	CAP domain-containing protein	NA	NA	NA	NA	NA
WP_000606480.1|1080270_1080705_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_099143900.1|1080785_1081715_-	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	25.4	1.5e-11
WP_001049150.1|1081953_1082208_+	YlbG family protein	NA	NA	NA	NA	NA
WP_000814565.1|1082210_1082600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001263802.1|1082669_1083212_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000401377.1|1083213_1083696_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843597.1|1083757_1084897_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872155.1|1085023_1085581_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1085660_1085834_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|1085950_1087336_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000392109.1|1087542_1088223_-	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000705247.1|1088362_1088530_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	8.6e-24
WP_029549401.1|1088731_1089361_-	LexA family transcriptional regulator	NA	Q4ZB06	Staphylococcus_virus	99.0	6.4e-112
WP_015978369.1|1089514_1089742_+	helix-turn-helix transcriptional regulator	NA	Q4ZB05	Staphylococcus_virus	100.0	1.6e-36
WP_029549402.1|1089764_1090541_+	transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	89.1	2.0e-123
WP_000772137.1|1090701_1090911_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000395457.1|1091117_1091348_-	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_000066020.1|1091527_1091689_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_029549408.1|1091781_1092042_+	DUF1108 family protein	NA	A0A2H4PQR7	Staphylococcus_phage	96.5	3.8e-42
WP_001205732.1|1092050_1092314_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_099143901.1|1092322_1094266_+	AAA family ATPase	NA	I1W619	Staphylococcus_phage	99.1	0.0e+00
WP_000138475.1|1094267_1095188_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072528355.1|1095268_1095886_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	99.4	2.7e-86
WP_099143902.1|1095886_1096357_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	97.4	4.8e-80
WP_099143903.1|1096386_1097271_+	DnaD domain protein	NA	I1W658	Staphylococcus_phage	97.3	1.7e-134
WP_000338528.1|1097277_1097496_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401972.1|1097504_1097909_+	RusA family crossover junction endodeoxyribonuclease	NA	O80087	Staphylococcus_phage	95.5	8.7e-70
WP_061393904.1|1097921_1098293_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	93.5	2.6e-52
WP_001126832.1|1098293_1098542_+	hypothetical protein	NA	S4SVD3	Staphylococcus_phage	100.0	4.2e-43
WP_000695766.1|1098554_1098956_+	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	99.2	2.1e-68
WP_053007324.1|1098952_1099336_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	54.8	2.5e-26
WP_099143904.1|1099332_1099683_+	hypothetical protein	NA	A0A2I6PDI3	Staphylococcus_phage	88.9	9.6e-33
WP_099143905.1|1099675_1099921_+	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	2.2e-36
WP_000185693.1|1099917_1100454_+	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001072795.1|1100693_1100897_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608278.1|1100889_1101126_+	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_031765522.1|1101109_1101505_+	phage protein	NA	A7TWI1	Staphylococcus_phage	98.5	4.8e-65
WP_000595257.1|1101501_1101675_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_033858146.1|1101675_1102077_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	99.2	3.6e-68
WP_000594088.1|1102428_1102923_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037578.1|1102915_1104139_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_031771035.1|1104135_1105560_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	98.9	8.4e-269
WP_001652283.1|1105528_1106479_+	hypothetical protein	NA	A0A0H3U2Z4	Staphylococcus_phage	97.8	8.9e-174
WP_054189012.1|1106574_1107159_+	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	99.5	4.8e-77
WP_000235168.1|1107175_1108090_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000177351.1|1108250_1108601_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_031923493.1|1108612_1108948_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	99.1	2.6e-59
WP_001151323.1|1108934_1109342_+	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_000270190.1|1109354_1109780_+	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
WP_000057584.1|1109780_1110338_+	hypothetical protein	NA	Q4ZBQ8	Staphylococcus_phage	99.5	4.1e-102
WP_000134337.1|1110404_1110911_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880587.1|1110955_1111240_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_099143906.1|1111243_1114129_+|terminase	terminase	terminase	A1KXA6	Staphylococcus_virus	97.5	0.0e+00
WP_031923496.1|1114143_1115085_+|tail	phage tail protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	99.7	2.6e-181
WP_031771031.1|1115095_1116982_+	peptidase	NA	A1KXA8	Staphylococcus_virus	99.8	0.0e+00
WP_031771029.1|1116994_1118893_+	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	97.9	0.0e+00
WP_031771028.1|1118892_1120716_+|plate	phage baseplate upper protein	plate	A0A2H4JB59	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_000705896.1|1120715_1121093_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782200.1|1121096_1121270_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|1121309_1121609_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_099143907.1|1121745_1123620_+	CHAP domain-containing protein	NA	A0A2I6PCX0	Staphylococcus_phage	99.2	0.0e+00
WP_099143908.1|1123632_1124805_+|plate	BppU family phage baseplate upper protein	plate	Q8SDT0	Staphylococcus_phage	99.2	2.4e-197
WP_015978410.1|1124810_1125206_+	hypothetical protein	NA	A0A2H4PQP8	Staphylococcus_phage	100.0	2.1e-68
WP_029549399.1|1125261_1125699_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	99.3	1.2e-72
WP_001148135.1|1125679_1127125_+	CHAP domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
WP_001041562.1|1127856_1129782_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160840.1|1129983_1131048_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_000789828.1|1131256_1131940_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001823678.1|1131939_1133016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001220199.1|1133012_1133891_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001823679.1|1133900_1134869_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001242406.1|1134930_1135665_+	class B sortase	NA	NA	NA	NA	NA
WP_000670950.1|1135683_1136007_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001803551.1|1136043_1136151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435378.1|1136390_1137131_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003566.1|1137511_1138570_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000909008.1|1138569_1140972_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	1333523	1340679	2758960	transposase	Staphylococcus_phage(75.0%)	11	NA	NA
WP_001659797.1|1333523_1333721_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078065144.1|1334410_1334635_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002343.1|1334930_1335137_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001788716.1|1335832_1335943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066124.1|1336197_1336959_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1336951_1338244_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_000006110.1|1338577_1338763_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477491.1|1339274_1339379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1339505_1339757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813273.1|1340230_1340485_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000780597.1|1340484_1340679_+	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
>prophage 8
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	1610571	1618883	2758960	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213910.1|1610571_1611357_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	6.1e-19
WP_000924210.1|1611482_1612373_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001062177.1|1612382_1613729_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683914.1|1613842_1614943_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624567.1|1614945_1615623_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1615753_1616860_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217251.1|1617083_1618883_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	1689526	1698569	2758960	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1689526_1690045_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594983.1|1690066_1692340_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	2.1e-64
WP_000749798.1|1692542_1694822_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1695096_1695357_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1695375_1696515_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019166.1|1696537_1697563_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1697564_1698569_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	1835759	1870477	2758960	protease	Staphylococcus_phage(93.75%)	40	NA	NA
WP_000526539.1|1835759_1836713_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764430.1|1836709_1837273_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	3.5e-101
WP_000757543.1|1837392_1837794_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266100.1|1838365_1839193_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1839195_1839315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196343.1|1839426_1840428_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_001008551.1|1840549_1841014_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_099143923.1|1841026_1842208_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.0	2.4e-224
WP_000493883.1|1842218_1842851_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	2.4e-111
WP_000384177.1|1842857_1843889_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	9.0e-196
WP_001261664.1|1844381_1845884_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221186.1|1846405_1846720_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_000989100.1|1846719_1848012_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000163239.1|1848029_1848422_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	6.9e-72
WP_001032836.1|1848826_1849681_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000384171.1|1849956_1850181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671047.1|1850379_1850850_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	4.4e-81
WP_001153740.1|1850962_1851406_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030470.1|1851392_1851836_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_025175276.1|1852133_1852769_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_000492902.1|1852935_1853556_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096492.1|1854024_1854738_-	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000091445.1|1854995_1855298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1855553_1855919_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|1855915_1856269_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453310.1|1856518_1857352_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_099143924.1|1857563_1858472_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	1.3e-137
WP_000933822.1|1858596_1859790_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109912.1|1860161_1861754_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078065176.1|1862047_1862794_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672009.1|1862798_1863272_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718107.1|1863337_1863595_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778517.1|1863591_1864593_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.1e-185
WP_099143925.1|1864597_1866076_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.5	1.0e-280
WP_078065177.1|1866235_1866691_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_001838615.1|1866993_1867644_+	hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.5	4.7e-33
WP_000070638.1|1867724_1868720_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_000669039.1|1868795_1869422_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000627534.1|1869462_1869804_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000414219.1|1869904_1870477_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 11
NZ_CP017679	Staphylococcus aureus strain CFSAN007883 chromosome, complete genome	2758960	1876031	1884346	2758960	transposase	Staphylococcus_phage(70.0%)	10	NA	NA
WP_001044434.1|1876031_1876886_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
WP_049280116.1|1877136_1877682_-	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_000669789.1|1878098_1878278_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1878588_1878849_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1878901_1879252_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_099143926.1|1879936_1880386_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	99.3	5.6e-78
WP_020444758.1|1880480_1880939_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_001066124.1|1881117_1881879_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1881871_1883164_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_000206347.1|1883557_1884346_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	7.0e-140
