assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	1	393079-393180	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP017682.1_384638_384848_-,NA|128aa|up_6|NZ_CP017682.1_385672_386056_-,NA|33aa|up_0|NZ_CP017682.1_392303_392402_+,NA|221aa|down_1|NZ_CP017682.1_394270_394933_-,NA|179aa|down_7|NZ_CP017682.1_401024_401561_-	NA|84aa|up_9|NZ_CP017682.1_384348_384600_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP017682.1_384638_384848_-	NA	NA|194aa|up_7|NZ_CP017682.1_385025_385607_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP017682.1_385672_386056_-	NA	NA|209aa|up_5|NZ_CP017682.1_386325_386952_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP017682.1_387395_388919_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP017682.1_388934_389504_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP017682.1_389995_390751_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP017682.1_390830_392219_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP017682.1_392303_392402_+	NA	NA|319aa|down_0|NZ_CP017682.1_393196_394153_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP017682.1_394270_394933_-	NA	NA|136aa|down_2|NZ_CP017682.1_395075_395483_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP017682.1_395995_396574_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP017682.1_396573_397842_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP017682.1_397879_399346_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP017682.1_399370_400912_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP017682.1_401024_401561_-	NA	NA|235aa|down_8|NZ_CP017682.1_401952_402657_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP017682.1_403055_403328_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	2	789073-789151	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	789097-789127|789097-789127|789097-789127	NZ_CP017682.1_258226-258196|NZ_CP017682.1_258171-258141|NZ_CP017682.1_1660334-1660364	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP017682.1_779949_780054_+,NA|36aa|up_5|NZ_CP017682.1_781486_781594_+,NA	NA|191aa|up_9|NZ_CP017682.1_776390_776963_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP017682.1_777376_779908_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP017682.1_779949_780054_+	NA	NA|370aa|up_6|NZ_CP017682.1_780222_781333_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP017682.1_781486_781594_+	NA	NA|280aa|up_4|NZ_CP017682.1_781741_782581_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP017682.1_782754_783405_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP017682.1_783401_783638_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP017682.1_783906_785892_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP017682.1_785899_788746_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP017682.1_789409_790342_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP017682.1_790347_791187_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP017682.1_791194_791680_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP017682.1_791687_793127_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP017682.1_793193_794129_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP017682.1_795072_795984_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP017682.1_795980_796976_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP017682.1_797086_798031_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP017682.1_798594_799182_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP017682.1_799424_800327_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	3	794528-794855	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTNTGTTGGGGCCCACACCCCAACTNGCATTG	36	5	52	794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794564-794585|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794622-794643|794680-794702|794680-794702|794680-794702|794680-794702|794680-794702|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794739-794760|794797-794819|794797-794819|794797-794819|794797-794819|794797-794819	NZ_CP017682.1_134948-134927|NZ_CP017682.1_135006-134985|NZ_CP017682.1_258142-258121|NZ_CP017682.1_258252-258231|NZ_CP017682.1_622958-622937|NZ_CP017682.1_747445-747466|NZ_CP017682.1_838102-838123|NZ_CP017682.1_1356262-1356241|NZ_CP017682.1_1626047-1626068|NZ_CP017682.1_1640602-1640581|NZ_CP017682.1_1952633-1952654|NZ_CP017682.1_951554-951575|NZ_CP017682.1_1660308-1660329|NZ_CP017682.1_1660422-1660443|NZ_CP017682.1_134948-134927|NZ_CP017682.1_135006-134985|NZ_CP017682.1_258142-258121|NZ_CP017682.1_258252-258231|NZ_CP017682.1_622958-622937|NZ_CP017682.1_747445-747466|NZ_CP017682.1_838102-838123|NZ_CP017682.1_1356262-1356241|NZ_CP017682.1_1626047-1626068|NZ_CP017682.1_1640602-1640581|NZ_CP017682.1_1952633-1952654|NZ_CP017682.1_951554-951575|NZ_CP017682.1_1660308-1660329|NZ_CP017682.1_1660422-1660443|NZ_CP017682.1_135065-135043|NZ_CP017682.1_1952691-1952713|NZ_CP017682.1_2292102-2292124|NZ_CP017682.1_1444562-1444584|NZ_CP017682.1_2053927-2053949|NZ_CP017682.1_134948-134927|NZ_CP017682.1_135006-134985|NZ_CP017682.1_258142-258121|NZ_CP017682.1_258252-258231|NZ_CP017682.1_622958-622937|NZ_CP017682.1_747445-747466|NZ_CP017682.1_838102-838123|NZ_CP017682.1_1356262-1356241|NZ_CP017682.1_1626047-1626068|NZ_CP017682.1_1640602-1640581|NZ_CP017682.1_1952633-1952654|NZ_CP017682.1_951554-951575|NZ_CP017682.1_1660308-1660329|NZ_CP017682.1_1660422-1660443|NZ_CP017682.1_135065-135043|NZ_CP017682.1_1952691-1952713|NZ_CP017682.1_2292102-2292124|NZ_CP017682.1_1444562-1444584|NZ_CP017682.1_2053927-2053949	NA	5	5	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP017682.1_781741_782581_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP017682.1_782754_783405_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP017682.1_783401_783638_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP017682.1_783906_785892_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP017682.1_785899_788746_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP017682.1_789409_790342_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP017682.1_790347_791187_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP017682.1_791194_791680_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP017682.1_791687_793127_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP017682.1_793193_794129_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP017682.1_795072_795984_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP017682.1_795980_796976_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP017682.1_797086_798031_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP017682.1_798594_799182_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP017682.1_799424_800327_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP017682.1_801029_801659_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP017682.1_802415_803429_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP017682.1_803481_804492_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP017682.1_804630_805821_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP017682.1_805942_806704_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	4	801900-801979	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	5	801924-801955|801924-801955|801924-801955|801924-801955|801924-801955	NZ_CP017682.1_36448-36479|NZ_CP017682.1_838359-838390|NZ_CP017682.1_1640671-1640640|NZ_CP017682.1_2077952-2077921|NZ_CP017682.1_2467691-2467722	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|153aa|down_6|NZ_CP017682.1_809996_810455_+	NA|280aa|up_9|NZ_CP017682.1_790347_791187_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP017682.1_791194_791680_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP017682.1_791687_793127_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP017682.1_793193_794129_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP017682.1_795072_795984_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP017682.1_795980_796976_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP017682.1_797086_798031_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP017682.1_798594_799182_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP017682.1_799424_800327_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP017682.1_801029_801659_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP017682.1_802415_803429_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP017682.1_803481_804492_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP017682.1_804630_805821_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP017682.1_805942_806704_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP017682.1_806706_808224_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP017682.1_808353_809658_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP017682.1_809996_810455_+	NA	NA|78aa|down_7|NZ_CP017682.1_810521_810755_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP017682.1_810870_811611_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP017682.1_811644_814017_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	5	838029-838110	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP017682.1_836931_837045_+,NA	NA|206aa|up_9|NZ_CP017682.1_831785_832403_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP017682.1_832557_833052_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP017682.1_833450_833873_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP017682.1_834020_834737_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP017682.1_834819_835359_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP017682.1_835509_835830_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP017682.1_835973_836330_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP017682.1_836487_836868_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP017682.1_836931_837045_+	NA	NA|293aa|up_0|NZ_CP017682.1_837046_837925_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP017682.1_838721_839108_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP017682.1_839100_839397_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP017682.1_839646_840672_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP017682.1_840664_841360_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP017682.1_841377_842199_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP017682.1_842552_842747_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP017682.1_842980_843832_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP017682.1_844159_844921_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP017682.1_845018_846326_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP017682.1_846440_847682_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	6	1625971-1626055	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1625997-1626029	NZ_CP017682.1_135056-135024	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP017682.1_1615180_1615864_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP017682.1_1616107_1616284_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP017682.1_1616576_1617923_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP017682.1_1617929_1618682_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP017682.1_1618683_1619622_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP017682.1_1619625_1620765_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP017682.1_1620900_1622733_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP017682.1_1622801_1623428_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP017682.1_1623459_1624437_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP017682.1_1624537_1625662_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP017682.1_1626227_1628051_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP017682.1_1628396_1628648_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP017682.1_1628692_1629667_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP017682.1_1629723_1631871_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP017682.1_1631929_1632391_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP017682.1_1632482_1633169_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP017682.1_1633208_1633925_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP017682.1_1633927_1634281_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP017682.1_1634281_1634866_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP017682.1_1634855_1635425_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	7	2053846-2053927	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2053870-2053903|2053870-2053903|2053870-2053903|2053870-2053903|2053870-2053903	NZ_CP017682.1_789072-789105|NZ_CP017682.1_1144573-1144540|NZ_CP017682.1_1747425-1747392|NZ_CP017682.1_1360597-1360630|NZ_CP017682.1_2744913-2744946	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_7|NZ_CP017682.1_2045591_2045933_+,NA|61aa|up_6|NZ_CP017682.1_2046135_2046318_+,NA|81aa|up_4|NZ_CP017682.1_2047411_2047654_+,NA	NA|238aa|up_9|NZ_CP017682.1_2043924_2044638_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NZ_CP017682.1_2044653_2045586_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NZ_CP017682.1_2045591_2045933_+	NA	NA|61aa|up_6|NZ_CP017682.1_2046135_2046318_+	NA	NA|328aa|up_5|NZ_CP017682.1_2046417_2047401_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NZ_CP017682.1_2047411_2047654_+	NA	NA|346aa|up_3|NZ_CP017682.1_2047716_2048754_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP017682.1_2049872_2050889_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP017682.1_2050910_2051966_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP017682.1_2052401_2053625_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP017682.1_2054068_2055376_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP017682.1_2055915_2057532_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP017682.1_2057607_2057892_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP017682.1_2058066_2058810_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP017682.1_2058834_2060094_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP017682.1_2060290_2060917_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP017682.1_2061277_2062063_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP017682.1_2062662_2062797_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP017682.1_2063032_2063596_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP017682.1_2063598_2063742_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	8	2182568-2182648	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP017682.1_2177442_2177673_-,NA|364aa|up_0|NZ_CP017682.1_2181459_2182551_+,NA|35aa|down_0|NZ_CP017682.1_2182983_2183088_-,NA|53aa|down_1|NZ_CP017682.1_2183767_2183926_+	NA|237aa|up_9|NZ_CP017682.1_2173053_2173764_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP017682.1_2173884_2174328_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP017682.1_2174527_2174941_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP017682.1_2175397_2176771_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP017682.1_2177442_2177673_-	NA	NA|313aa|up_4|NZ_CP017682.1_2177703_2178642_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP017682.1_2179077_2179743_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP017682.1_2179894_2180215_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP017682.1_2180216_2181194_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP017682.1_2181459_2182551_+	NA	NA|35aa|down_0|NZ_CP017682.1_2182983_2183088_-	NA	NA|53aa|down_1|NZ_CP017682.1_2183767_2183926_+	NA	NA|286aa|down_2|NZ_CP017682.1_2184583_2185441_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP017682.1_2185508_2186291_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP017682.1_2186522_2188328_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP017682.1_2189008_2190547_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP017682.1_2190581_2192714_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP017682.1_2192725_2193160_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP017682.1_2193159_2194266_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP017682.1_2194584_2202030_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	9	2194889-2194974	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP017682.1_2181459_2182551_+,NA|35aa|up_8|NZ_CP017682.1_2182983_2183088_-,NA|53aa|up_7|NZ_CP017682.1_2183767_2183926_+,NA	NA|364aa|up_9|NZ_CP017682.1_2181459_2182551_+	NA	NA|35aa|up_8|NZ_CP017682.1_2182983_2183088_-	NA	NA|53aa|up_7|NZ_CP017682.1_2183767_2183926_+	NA	NA|286aa|up_6|NZ_CP017682.1_2184583_2185441_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP017682.1_2185508_2186291_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP017682.1_2186522_2188328_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP017682.1_2189008_2190547_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP017682.1_2190581_2192714_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP017682.1_2192725_2193160_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP017682.1_2193159_2194266_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP017682.1_2202307_2203663_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP017682.1_2203689_2204622_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP017682.1_2204623_2205433_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP017682.1_2205621_2206530_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP017682.1_2212770_2213835_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP017682.1_2213982_2215425_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP017682.1_2215747_2216221_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP017682.1_2216319_2217663_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP017682.1_2217839_2218523_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP017682.1_2218541_2219729_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_002633805.1_ASM263380v1	NZ_CP017682	Staphylococcus aureus strain CFSAN007850 chromosome, complete genome	10	2302931-2303011	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	12	2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986|2302956-2302986	NZ_CP017682.1_801874-801904|NZ_CP017682.1_36454-36484|NZ_CP017682.1_334559-334529|NZ_CP017682.1_623022-622992|NZ_CP017682.1_838365-838395|NZ_CP017682.1_1047550-1047580|NZ_CP017682.1_1150171-1150141|NZ_CP017682.1_1444615-1444645|NZ_CP017682.1_1640665-1640635|NZ_CP017682.1_1951285-1951315|NZ_CP017682.1_2292155-2292185|NZ_CP017682.1_2467697-2467727	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP017682.1_2293464_2293629_+,NA|106aa|up_8|NZ_CP017682.1_2293873_2294191_+,NA|84aa|up_5|NZ_CP017682.1_2299312_2299564_+,NA|62aa|up_0|NZ_CP017682.1_2302703_2302889_+,NA	NA|55aa|up_9|NZ_CP017682.1_2293464_2293629_+	NA	NA|106aa|up_8|NZ_CP017682.1_2293873_2294191_+	NA	NA|1056aa|up_7|NZ_CP017682.1_2294374_2297542_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP017682.1_2297658_2298924_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP017682.1_2299312_2299564_+	NA	NA|255aa|up_4|NZ_CP017682.1_2299555_2300320_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP017682.1_2300481_2300922_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP017682.1_2300914_2302126_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP017682.1_2302227_2302578_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP017682.1_2302703_2302889_+	NA	NA|341aa|down_0|NZ_CP017682.1_2303154_2304177_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP017682.1_2304196_2304796_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP017682.1_2304802_2305036_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP017682.1_2305041_2305488_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP017682.1_2305501_2305987_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP017682.1_2305983_2307243_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP017682.1_2307305_2307800_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP017682.1_2307801_2308308_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP017682.1_2308338_2309343_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP017682.1_2309512_2310118_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
