The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	720712	728531	2676924		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|720712_721768_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|721767_722454_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|722428_722902_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093554.1|723242_723683_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|723962_724547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|724645_725359_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|725362_725782_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446726.1|725783_726452_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000604517.1|726802_727396_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217805.1|727379_728531_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	740507	754783	2676924		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_061104793.1|740507_741566_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000197263.1|741723_742272_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|742959_743877_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_031785486.1|743967_744069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193753.1|744146_745652_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_000930014.1|745992_746493_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|746512_747379_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|748180_748579_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_099112081.1|748541_750647_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562500.1|750764_751736_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000876313.1|752110_753082_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245581.1|753068_754025_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616861.1|754021_754783_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 3
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	807053	826327	2676924	integrase,coat	Staphylococcus_phage(68.42%)	25	809715:809730	824515:824530
WP_001050026.1|807053_809426_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	7.3e-92
WP_001085185.1|809447_809912_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
809715:809730	attL	CGTGAAATCATTAAAT	NA	NA	NA	NA
WP_000149511.1|810474_811581_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
WP_000358990.1|811570_812374_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
WP_001045296.1|812509_812713_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000163544.1|812748_812967_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784885.1|812978_813125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058494.1|813117_813327_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	8.5e-29
WP_001103939.1|813329_813647_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
WP_099112084.1|813710_814580_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.5	9.7e-159
WP_000390453.1|814596_816054_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	6.6e-277
WP_001039170.1|816354_816717_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	3.4e-65
WP_000998185.1|816718_817003_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	7.7e-49
WP_001019808.1|816999_817641_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.9e-111
WP_001288441.1|818349_818694_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
WP_000856046.1|818728_819307_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	95.8	7.8e-80
WP_000777464.1|819535_820063_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.9	1.1e-88
WP_045181470.1|820194_820407_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_061104772.1|821077_821425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099112085.1|821424_822117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001805416.1|822229_822418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001001286.1|822410_823079_+	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	33.7	4.5e-15
WP_001035612.1|823299_823854_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
WP_001043552.1|824637_825438_+	staphylococcal enterotoxin type C2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
824515:824530	attR	CGTGAAATCATTAAAT	NA	NA	NA	NA
WP_000746602.1|825604_826327_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	29.3	1.6e-18
>prophage 4
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	1013019	1021492	2676924		Synechococcus_phage(33.33%)	9	NA	NA
WP_001622461.1|1013019_1013502_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010404.1|1013488_1014613_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174048.1|1014616_1015321_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_000848350.1|1015320_1015584_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666803.1|1015585_1016257_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032752.1|1016249_1018439_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483713.1|1018417_1019902_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030827.1|1019894_1020923_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000238657.1|1020925_1021492_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 5
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	1276632	1292317	2676924	integrase,portal,terminase,transposase,head	Staphylococcus_phage(57.14%)	24	1270455:1270472	1295153:1295170
1270455:1270472	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_000146714.1|1276632_1277340_-|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
WP_061104743.1|1277392_1278088_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	51.5	2.1e-07
WP_000554409.1|1278099_1278483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001083979.1|1278629_1278995_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000842951.1|1279156_1279369_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	83.3	6.8e-26
WP_000789021.1|1279416_1279698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072840.1|1279868_1280030_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786995.1|1280116_1280434_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786635.1|1280423_1280690_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001004328.1|1280694_1281231_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000818736.1|1281231_1282011_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_076679818.1|1282091_1282586_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_000929467.1|1282599_1283538_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
WP_000945229.1|1283538_1283829_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000714365.1|1283843_1284002_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000860977.1|1284007_1284319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185174.1|1284311_1284842_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_025174108.1|1284983_1285091_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_098686295.1|1285314_1286443_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_000653928.1|1287055_1287544_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000090969.1|1287695_1288124_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_099112099.1|1288110_1289385_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	7.2e-195
WP_000158569.1|1289397_1290846_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.6	1.9e-196
WP_078064715.1|1291375_1292317_+|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.4	5.0e-52
1295153:1295170	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 6
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	1564422	1572734	2676924	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1564422_1565208_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1565333_1566224_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1566233_1567580_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683915.1|1567693_1568794_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624564.1|1568796_1569474_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1569604_1570711_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217237.1|1570934_1572734_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
>prophage 7
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	1642048	1651092	2676924	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1642048_1642567_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594987.1|1642588_1644862_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_000749795.1|1645065_1647345_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1647619_1647880_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1647898_1649038_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019180.1|1649060_1650086_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_061104859.1|1650087_1651092_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP017685	Staphylococcus aureus strain CFSAN007835 chromosome, complete genome	2676924	1773677	1820006	2676924	transposase,tRNA,protease	Staphylococcus_phage(91.43%)	43	NA	NA
WP_099112111.1|1773677_1780235_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.3	2.5e-291
WP_000836464.1|1780559_1780871_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_001108717.1|1780892_1783307_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|1783598_1784780_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526542.1|1784889_1785843_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764418.1|1785839_1786403_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000757543.1|1786519_1786921_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1787491_1788319_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1788321_1788441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1788552_1789554_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1789675_1790140_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159030.1|1790152_1791334_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493880.1|1791344_1791977_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_029549219.1|1791983_1793015_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_001261660.1|1793508_1795011_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221174.1|1795653_1795968_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_000989113.1|1795967_1797260_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_001032834.1|1797346_1798201_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1798475_1798700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061104854.1|1798898_1799369_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.5	1.9e-68
WP_001152694.1|1799481_1799925_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030473.1|1799911_1800355_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_001168913.1|1800651_1801287_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492904.1|1801453_1802074_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1802809_1803523_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1803781_1804084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200545.1|1804339_1804705_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000623468.1|1804701_1805055_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_000453324.1|1805304_1806138_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|1806349_1807258_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933821.1|1807382_1808576_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109912.1|1808947_1810540_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001827685.1|1810919_1811666_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000672013.1|1811670_1812144_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718111.1|1812209_1812467_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000778530.1|1812463_1813465_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
WP_000348383.1|1813469_1814948_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
WP_072468941.1|1815106_1815562_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_001796416.1|1815864_1816515_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_000070666.1|1816595_1817591_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_000669031.1|1817666_1818293_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000627532.1|1818333_1818675_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_098686295.1|1818876_1820006_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
