The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	16233	46488	2560809	tRNA	Staphylococcus_phage(96.15%)	32	NA	NA
WP_002492603.1|16233_17628_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.1e-169
WP_002492644.1|17634_18639_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
WP_002458786.1|18635_18893_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
WP_002492645.1|18959_19433_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
WP_002492634.1|19413_20187_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	5.0e-98
WP_002492597.1|20250_21843_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	85.8	1.5e-274
WP_002458790.1|22214_23411_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
WP_002458791.1|23509_24418_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
WP_002492600.1|24532_25366_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	72.9	2.1e-118
WP_002478001.1|25550_25904_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_002478002.1|25900_26266_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
WP_002478003.1|26334_26640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002458796.1|26896_27610_+	transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
WP_002458797.1|27740_28193_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
WP_002492607.1|28173_28620_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002478005.1|28635_29106_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
WP_002458800.1|29303_29528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458801.1|29729_30584_+	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
WP_002492594.1|30967_32467_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
WP_002492592.1|32778_33885_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.6	4.9e-123
WP_002458804.1|33892_34525_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	2.3e-77
WP_002478008.1|34537_35719_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	2.9e-174
WP_002458806.1|35731_36190_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
WP_098903136.1|36267_37254_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.3	2.1e-133
WP_002458808.1|37470_38304_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002458809.1|38798_39200_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458810.1|39250_39814_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
WP_002492612.1|39810_40764_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	4.1e-70
WP_002492648.1|40867_42043_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.8	1.4e-176
WP_002492652.1|42364_44779_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.1	0.0e+00
WP_002458814.1|44797_45109_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
WP_002492605.1|45228_46488_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	84.5	5.7e-43
>prophage 2
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	163719	172750	2560809	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002478078.1|163719_164724_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
WP_002492120.1|164726_165752_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002458926.1|165770_166910_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	5.4e-85
WP_002458927.1|166928_167189_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
WP_098903137.1|167374_169663_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
WP_070858044.1|169935_172212_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.9e-65
WP_002458930.1|172231_172750_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
>prophage 3
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	299383	308078	2560809		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_002459061.1|299383_300115_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
WP_002492337.1|300107_300641_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	4.6e-10
WP_002478163.1|300643_301381_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002459064.1|301531_302257_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
WP_002492342.1|302240_303989_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	31.6	1.5e-20
WP_002478165.1|304709_305252_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002449743.1|305393_305642_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_002492332.1|305752_306712_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002459069.1|306698_308078_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 4
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	712319	720789	2560809		Synechococcus_phage(33.33%)	9	NA	NA
WP_002492152.1|712319_712886_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
WP_002478378.1|712885_713917_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	8.7e-66
WP_037540539.1|713909_715394_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.2	3.2e-45
WP_002478379.1|715372_717562_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.7	1.0e-135
WP_002478380.1|717554_718226_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002459451.1|718227_718488_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002478381.1|718487_719192_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
WP_002492672.1|719192_720320_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002478383.1|720306_720789_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
>prophage 5
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	1011881	1024315	2560809		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_002459740.1|1011881_1012859_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
WP_002459741.1|1013227_1014196_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	5.7e-176
WP_002459742.1|1014435_1016541_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_002459743.1|1016503_1016902_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
WP_002492137.1|1017774_1018644_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002479355.1|1018656_1019157_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
WP_002492139.1|1019441_1020947_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.9	1.2e-60
WP_002492138.1|1021273_1022188_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_002492147.1|1022491_1023022_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.3e-28
WP_002459751.1|1023259_1024315_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
>prophage 6
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	1039577	1046198	2560809		Pandoravirus(16.67%)	8	NA	NA
WP_002459762.1|1039577_1040729_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
WP_002479366.1|1040712_1041309_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
WP_002492964.1|1041644_1042316_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.9	3.6e-68
WP_002459765.1|1042317_1042737_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002459766.1|1042736_1043453_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
WP_002493007.1|1043551_1044142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459768.1|1044182_1045205_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.9	3.2e-60
WP_002492999.1|1045361_1046198_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	1.2e-62
>prophage 7
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	1370517	1386943	2560809	integrase,terminase	Staphylococcus_phage(50.0%)	25	1367843:1367902	1380925:1380998
1367843:1367902	attL	CAAAACACAAAAACAACCCCATAAGCCTATGCTTACGGGGTTTTATAATAAACTATATAT	NA	NA	NA	NA
WP_002445377.1|1370517_1371090_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	72.1	1.4e-73
WP_002445376.1|1371152_1371674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492317.1|1371685_1371919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002445374.1|1371932_1372277_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	86.8	2.7e-48
WP_002492071.1|1372562_1373204_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	70.4	7.5e-84
WP_002492062.1|1373205_1373727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492057.1|1374051_1375761_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	69.9	1.0e-236
WP_002492075.1|1375774_1376644_-	primase C-terminal domain-containing protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	59.0	6.2e-97
WP_002492064.1|1376737_1377040_-	DUF1474 family protein	NA	A0A2H4JB50	uncultured_Caudovirales_phage	82.8	5.5e-37
WP_002492019.1|1377039_1377459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492040.1|1377448_1377607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002492070.1|1377623_1377896_-	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	74.4	7.4e-33
WP_002492076.1|1377896_1378118_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	1.5e-07
WP_002459648.1|1378289_1378862_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002459649.1|1378888_1379581_+	hypothetical protein	NA	A0A1J0MG42	Staphylococcus_phage	38.6	5.7e-29
WP_002492008.1|1379617_1380838_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	80.2	6.3e-180
WP_002461103.1|1380983_1381226_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
1380925:1380998	attR	CAAAACACAAAAACAACCCCATAAGCCTATGCTTACGGGGTTTTATAATAAACTATATATTAGTTTTCTTCTTT	NA	NA	NA	NA
WP_002461102.1|1381272_1381782_-	single-stranded DNA-binding protein	NA	A0A2H4JCF2	uncultured_Caudovirales_phage	79.9	3.8e-62
WP_002461101.1|1381803_1382100_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002461100.1|1382417_1383203_+	lysozyme	NA	A0A291I9H5	Lactobacillus_phage	45.6	6.1e-35
WP_002479240.1|1383264_1383456_+	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	78.3	3.7e-23
WP_002479239.1|1383695_1384793_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_002479238.1|1384792_1385008_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_002479237.1|1385025_1385907_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_002492025.1|1386115_1386943_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	38.1	6.4e-11
>prophage 8
NZ_CP023970	Staphylococcus lugdunensis strain FDAARGOS_381 chromosome, complete genome	2560809	2443005	2456178	2560809	integrase,terminase	Staphylococcus_phage(62.5%)	20	2444955:2444974	2458784:2458803
WP_002461410.1|2443005_2443290_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	45.2	1.2e-12
WP_002461409.1|2443349_2444972_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.4	3.1e-158
2444955:2444974	attL	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
WP_002492309.1|2445040_2446213_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.4	3.9e-219
WP_002445345.1|2446226_2446901_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	2.7e-39
WP_000153640.1|2447073_2447292_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_002445364.1|2447296_2447614_+	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	97.1	2.7e-50
WP_002445365.1|2447610_2447757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058489.1|2447749_2447959_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	98.6	1.6e-30
WP_002445368.1|2447961_2448285_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	88.9	6.7e-49
WP_002445370.1|2448348_2449218_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	94.5	1.2e-161
WP_098903159.1|2449231_2450941_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.6	5.9e-301
WP_002445372.1|2451288_2451654_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	81.8	2.7e-54
WP_002492310.1|2451667_2452309_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	74.2	3.0e-88
WP_002445374.1|2452596_2452941_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	86.8	2.7e-48
WP_002492317.1|2452954_2453188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002445376.1|2453199_2453721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002445377.1|2453783_2454356_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	72.1	1.4e-73
WP_002492698.1|2454635_2455145_+	DUF4065 domain-containing protein	NA	D7RWK7	Brochothrix_phage	37.4	3.8e-22
WP_002445379.1|2455137_2455746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080047653.1|2455929_2456178_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	51.8	1.8e-17
2458784:2458803	attR	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
