The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023966	Staphylococcus capitis strain FDAARGOS_378 chromosome, complete genome	2419686	862029	948588	2419686	integrase,holin,capsid,terminase,head,tail,plate,portal,tRNA	Staphylococcus_phage(76.04%)	105	861963:861980	907549:907566
861963:861980	attL	ATCCCTCACTCTCCGTAC	NA	NA	NA	NA
WP_098905429.1|862029_863079_-|integrase	site-specific integrase	integrase	A0A1W6JNK5	Staphylococcus_phage	99.4	1.0e-199
WP_098905430.1|863138_864464_-	DUF4041 domain-containing protein	NA	Q708S0	Streptococcus_phage	71.7	9.2e-44
WP_098905431.1|864480_864942_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4J4F2	uncultured_Caudovirales_phage	83.0	1.8e-71
WP_098905432.1|864956_865337_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	72.8	1.5e-44
WP_098905433.1|865499_865724_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	87.8	2.0e-31
WP_098905434.1|865746_866193_+	hypothetical protein	NA	A0A1W6JNN0	Staphylococcus_phage	73.0	4.0e-60
WP_002497126.1|866206_866386_+	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	91.5	4.6e-23
WP_002497125.1|866375_866615_-	hypothetical protein	NA	A0A0H3U4W2	Staphylococcus_phage	98.7	3.5e-42
WP_098905435.1|866663_867437_+	Rha family transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	87.5	9.3e-121
WP_030058915.1|867472_867706_+	DUF2829 domain-containing protein	NA	A0A0N9SKI8	Staphylococcus_phage	94.8	1.1e-37
WP_098905436.1|867691_868030_-	hypothetical protein	NA	A0A2H4JGF0	uncultured_Caudovirales_phage	89.3	2.6e-51
WP_023350557.1|868241_868418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168995380.1|868477_868645_+	hypothetical protein	NA	A0A2H4J688	uncultured_Caudovirales_phage	96.3	1.2e-20
WP_168995382.1|868646_868796_+	hypothetical protein	NA	I6SB01	Staphylococcus_virus	65.9	4.7e-05
WP_049399208.1|868878_869343_-	hypothetical protein	NA	H9A0R0	Staphylococcus_phage	85.7	1.7e-69
WP_049399210.1|869398_869608_+	hypothetical protein	NA	A0A2H4J7I0	uncultured_Caudovirales_phage	97.1	8.2e-32
WP_168995383.1|869621_869768_+	hypothetical protein	NA	A0A2H4J3J6	uncultured_Caudovirales_phage	75.0	5.0e-12
WP_098905437.1|869754_870033_-	hypothetical protein	NA	A0A2H4JB42	uncultured_Caudovirales_phage	76.1	3.6e-35
WP_098905438.1|870190_870409_+	hypothetical protein	NA	A0A2H4J3A8	uncultured_Caudovirales_phage	82.8	2.1e-17
WP_098905439.1|870430_870712_+	chordopoxvirus fusion protein	NA	A0A2H4J6V3	uncultured_Caudovirales_phage	96.3	2.3e-05
WP_098905440.1|870677_870899_+	DUF2483 family protein	NA	A0A1W6JNQ2	Staphylococcus_phage	94.5	3.5e-33
WP_098905441.1|870891_871539_+	ERF family protein	NA	A0A1W6JNQ5	Staphylococcus_phage	96.3	1.7e-112
WP_098905442.1|871535_871943_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	70.1	2.7e-47
WP_098905443.1|871956_872631_+	hypothetical protein	NA	A0A2H4J9L1	uncultured_Caudovirales_phage	87.4	4.5e-111
WP_049399485.1|872627_872915_+	helix-turn-helix domain-containing protein	NA	A0A1W6JNM9	Staphylococcus_phage	100.0	6.4e-43
WP_049399483.1|872920_873706_+	conserved phage C-terminal domain-containing protein	NA	A0A1W6JNM1	Staphylococcus_phage	92.3	1.2e-128
WP_098905444.1|873716_874487_+	ATP-binding protein	NA	A0A1W6JNQ7	Staphylococcus_phage	94.5	9.2e-137
WP_049399495.1|874480_874636_+	hypothetical protein	NA	A0A1W6JNM0	Staphylococcus_phage	98.0	1.8e-20
WP_098905445.1|874638_874884_+	hypothetical protein	NA	A0A1W6JNN7	Staphylococcus_phage	92.6	1.4e-38
WP_098905446.1|875291_875486_+	hypothetical protein	NA	H9A0Z7	Staphylococcus_phage	96.9	1.5e-27
WP_098905447.1|875486_875834_+	hypothetical protein	NA	H9A0Z8	Staphylococcus_phage	91.7	5.2e-55
WP_023350543.1|875834_876032_+	hypothetical protein	NA	H9A0Z9	Staphylococcus_phage	89.2	1.8e-28
WP_098905448.1|876034_876499_+	nucleoside 2-deoxyribosyltransferase	NA	H9A100	Staphylococcus_phage	95.4	1.9e-81
WP_192940987.1|876495_876669_+	hypothetical protein	NA	A0A0D4DCW7	Staphylococcus_phage	73.8	9.5e-18
WP_098905449.1|876665_876902_+	hypothetical protein	NA	A0A1J0MFE3	Staphylococcus_phage	71.8	5.8e-26
WP_098905450.1|876915_877233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098905451.1|877222_877441_+	hypothetical protein	NA	A0A2H4JGA4	uncultured_Caudovirales_phage	62.7	1.1e-18
WP_192940988.1|877433_877586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098905452.1|877586_877904_+	MazG-like family protein	NA	A0A2H4J2H9	uncultured_Caudovirales_phage	94.2	6.0e-50
WP_098905453.1|877959_878127_+	regulator	NA	A0A1W6JQK2	Staphylococcus_phage	82.7	7.3e-15
WP_002436508.1|878197_878614_+	hypothetical protein	NA	A0A1W6JNV8	Staphylococcus_phage	98.6	4.1e-75
WP_049307394.1|878891_879233_+	helix-turn-helix domain-containing protein	NA	A0A2H4IYT3	uncultured_Caudovirales_phage	82.3	5.8e-43
WP_023350535.1|879225_880518_+|terminase	PBSX family phage terminase large subunit	terminase	H9A0U5	Staphylococcus_phage	95.6	1.1e-251
WP_023350534.1|880531_882028_+|portal	phage portal protein	portal	A0A1W6JNG9	Staphylococcus_phage	92.4	5.0e-272
WP_098905454.1|882034_882985_+|capsid	minor capsid protein	capsid	A0A2H4IYR8	uncultured_Caudovirales_phage	85.8	7.3e-152
WP_023350531.1|883004_883550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002436512.1|883542_883686_+	hypothetical protein	NA	A0A1W6JNL8	Staphylococcus_phage	68.2	1.8e-06
WP_098905455.1|883939_884545_+	DUF4355 domain-containing protein	NA	A0A1W6JNT6	Staphylococcus_phage	65.5	3.1e-23
WP_098905456.1|884561_885491_+|capsid	phage major capsid protein	capsid	A0A1W6JNP7	Staphylococcus_phage	87.1	1.5e-154
WP_072098683.1|885511_885781_+	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	64.0	1.6e-24
WP_049399465.1|885782_886112_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	78.9	1.9e-43
WP_098905457.1|886108_886411_+	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	80.0	2.2e-41
WP_098905458.1|886410_886773_+	HK97 gp10 family phage protein	NA	A0A1W6JNQ6	Staphylococcus_phage	75.7	6.6e-45
WP_098905459.1|886772_887162_+	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	72.1	4.0e-48
WP_098905460.1|887205_887760_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	88.6	1.5e-85
WP_098905461.1|887821_888181_+|tail	phage tail protein	tail	A0A1W6JNQ1	Staphylococcus_phage	60.5	5.2e-34
WP_098905462.1|888222_888567_+	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	78.1	4.1e-44
WP_098905463.1|888581_892490_+|tail	phage tail protein	tail	A0A1W6JNU6	Staphylococcus_phage	86.0	1.3e-162
WP_098905464.1|892501_893458_+|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	72.4	6.3e-135
WP_098905465.1|893469_894930_+	hypothetical protein	NA	A0A1W6JNY1	Staphylococcus_phage	70.6	8.3e-155
WP_098905466.1|894932_896819_+	DUF2817 domain-containing protein	NA	H9A0P4	Staphylococcus_phage	67.3	1.7e-253
WP_098905467.1|896831_898019_+|plate	BppU family phage baseplate upper protein	plate	H9A0P5	Staphylococcus_phage	60.1	5.1e-126
WP_002475569.1|898032_898455_+	hypothetical protein	NA	A0A1W6JNR2	Staphylococcus_phage	62.6	1.7e-47
WP_098905468.1|898435_898834_+	hypothetical protein	NA	A0A1W6JQP0	Staphylococcus_phage	41.9	8.1e-20
WP_098905469.1|901077_902736_+|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNS7	Staphylococcus_phage	67.1	8.0e-61
WP_098905470.1|902747_903092_+	hypothetical protein	NA	A0A2H4JI08	uncultured_Caudovirales_phage	49.6	1.5e-22
WP_023350509.1|903084_903231_+	XkdX family protein	NA	A0A2H4J8V3	uncultured_Caudovirales_phage	83.0	1.8e-17
WP_098905471.1|903272_903779_+	hypothetical protein	NA	A1BU74	Staphylococcus_virus	73.8	6.2e-65
WP_098905472.1|903775_904312_+	hypothetical protein	NA	A1BU75	Staphylococcus_virus	30.8	4.6e-10
WP_002469936.1|904342_904753_+|holin	phage holin	holin	A0A2H4J5P8	uncultured_Caudovirales_phage	75.0	3.7e-52
WP_098905473.1|904727_906191_+	SH3 domain-containing protein	NA	A0A2H4J845	uncultured_Caudovirales_phage	88.1	2.1e-262
WP_087671645.1|906562_906673_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	88.9	1.0e-09
WP_098905475.1|906674_906860_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	82.0	7.5e-21
WP_023350060.1|908169_909573_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.3	1.4e-170
907549:907566	attR	ATCCCTCACTCTCCGTAC	NA	NA	NA	NA
WP_023350061.1|909569_910571_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.5	3.2e-97
WP_029625717.1|910567_910816_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	90.2	3.1e-38
WP_023350062.1|910886_911360_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	55.1	2.3e-45
WP_023350063.1|911340_912126_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	73.7	9.5e-105
WP_002434740.1|912203_913796_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	89.8	1.9e-285
WP_023350065.1|914171_915365_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.1	5.7e-194
WP_002434861.1|915475_916384_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	82.5	2.6e-106
WP_002434834.1|916539_917379_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	71.8	2.1e-118
WP_023350066.1|917456_917813_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.8	3.2e-07
WP_023350067.1|917809_918172_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	64.2	2.1e-38
WP_002434733.1|918227_918536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002434689.1|918828_919542_+	transaldolase	NA	R9TM64	Synechococcus_phage	36.5	1.3e-20
WP_023350068.1|919697_920141_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	48.3	1.8e-23
WP_002434754.1|920127_920571_-	competence protein ComK	NA	NA	NA	NA	NA
WP_023350069.1|920590_921061_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	46.1	2.1e-30
WP_002434817.1|921269_921488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002434844.1|921803_922655_+	glucosaminidase domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	34.5	4.0e-32
WP_023350071.1|922970_924461_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	89.3	1.4e-19
WP_002453491.1|924869_925919_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	68.1	2.3e-138
WP_030058685.1|925925_926558_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.1	4.5e-89
WP_023350073.1|926569_927751_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	76.6	3.9e-179
WP_002434688.1|927793_928252_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.9	7.1e-60
WP_023350074.1|928318_929320_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	70.9	3.3e-134
WP_002434756.1|929566_930394_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002434669.1|930807_931209_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002434676.1|931286_931850_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	67.6	3.5e-69
WP_002434687.1|931846_932800_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	86.8	7.8e-69
WP_002434677.1|932906_934130_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	80.9	1.0e-182
WP_023350077.1|934421_936839_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	88.3	0.0e+00
WP_002434691.1|936859_937171_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	74.8	7.4e-37
WP_098905476.1|937476_948588_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	35.3	7.7e-59
>prophage 2
NZ_CP023966	Staphylococcus capitis strain FDAARGOS_378 chromosome, complete genome	2419686	1065923	1077472	2419686	tRNA	uncultured_Mediterranean_phage(57.14%)	8	NA	NA
WP_023350149.1|1065923_1066928_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	4.9e-05
WP_002436078.1|1066929_1067955_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002436105.1|1067977_1069117_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.3	6.4e-86
WP_002436110.1|1069132_1069396_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	4.4e-06
WP_023350151.1|1069631_1071923_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.2	7.4e-33
WP_023350152.1|1072061_1074335_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.2	4.1e-68
WP_002453394.1|1074353_1074872_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	3.3e-29
WP_098905480.1|1075282_1077472_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	37.2	2.0e-11
>prophage 3
NZ_CP023966	Staphylococcus capitis strain FDAARGOS_378 chromosome, complete genome	2419686	1659214	1667684	2419686		Synechococcus_phage(33.33%)	9	NA	NA
WP_023350476.1|1659214_1659781_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	42.6	1.5e-30
WP_037548668.1|1659777_1660812_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.4	1.1e-63
WP_002435420.1|1660804_1662289_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.4	1.3e-46
WP_023350478.1|1662267_1664457_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.6	6.9e-137
WP_023350479.1|1664449_1665121_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002435433.1|1665122_1665383_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002435397.1|1665382_1666087_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	44.2	3.3e-48
WP_023350480.1|1666087_1667215_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002435312.1|1667201_1667684_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	40.8	4.4e-20
>prophage 4
NZ_CP023966	Staphylococcus capitis strain FDAARGOS_378 chromosome, complete genome	2419686	1914087	1921592	2419686		Pandoravirus(16.67%)	10	NA	NA
WP_037560676.1|1914087_1915242_-	aminodeoxychorismate synthase component I	NA	A0A0B5J984	Pandoravirus	35.7	7.6e-26
WP_023350678.1|1915231_1915819_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	39.6	4.1e-36
WP_023350679.1|1916124_1916796_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.0	2.6e-63
WP_002433142.1|1916797_1917217_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002433181.1|1917220_1917934_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	43.5	6.5e-52
WP_002433459.1|1918033_1918633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049326443.1|1918913_1919351_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_002433139.1|1919402_1919876_+	DoxX family protein	NA	NA	NA	NA	NA
WP_030059105.1|1919850_1920540_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.8e-35
WP_023350683.1|1920542_1921592_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.5	1.8e-18
