assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	1	409628-409781	1	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|150aa|down_8|NZ_CP023899.1_419358_419808_-	NA|134aa|up_9|NZ_CP023899.1_400547_400949_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_8|NZ_CP023899.1_401006_402251_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_7|NZ_CP023899.1_402342_402801_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_6|NZ_CP023899.1_403061_404519_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|47aa|up_5|NZ_CP023899.1_404575_404716_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_4|NZ_CP023899.1_404875_405142_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|NZ_CP023899.1_405448_405901_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP023899.1_405897_406953_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP023899.1_407023_407809_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP023899.1_407753_409493_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP023899.1_409810_410308_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|down_1|NZ_CP023899.1_410483_411233_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP023899.1_411533_412274_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP023899.1_412244_413012_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP023899.1_413217_413796_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP023899.1_414035_416480_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP023899.1_416522_416996_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP023899.1_417149_417920_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP023899.1_419358_419808_-	NA	NA|451aa|down_9|NZ_CP023899.1_424720_426073_+	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	2	599691-599806	2	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|NZ_CP023899.1_587706_588885_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP023899.1_588986_589118_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP023899.1_589206_590862_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP023899.1_591025_592009_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP023899.1_591984_593595_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP023899.1_593578_594277_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP023899.1_594390_595155_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP023899.1_595240_596119_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP023899.1_596457_598158_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP023899.1_598168_599671_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP023899.1_599870_600566_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP023899.1_600640_602992_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP023899.1_603156_606063_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP023899.1_606074_606734_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP023899.1_606850_607666_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP023899.1_607920_610275_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP023899.1_610327_611614_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP023899.1_611613_612603_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP023899.1_612599_613421_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP023899.1_613423_613801_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	3	622719-622851	1	PILER-CR	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|NZ_CP023899.1_613423_613801_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP023899.1_613807_614650_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP023899.1_614727_615207_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP023899.1_615398_617261_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP023899.1_617253_617784_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP023899.1_617891_619223_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP023899.1_619280_619568_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP023899.1_619564_620851_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP023899.1_620901_621843_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP023899.1_621857_622628_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP023899.1_623101_624616_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP023899.1_624646_625789_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP023899.1_625917_627135_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP023899.1_627208_628762_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP023899.1_628870_629656_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP023899.1_629661_630252_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP023899.1_630337_630733_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP023899.1_630993_634215_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP023899.1_634232_635381_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP023899.1_635836_636658_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	4	2076139-2076278	3	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|NZ_CP023899.1_2068604_2069612_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP023899.1_2069817_2070696_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP023899.1_2070704_2071700_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP023899.1_2071908_2072433_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP023899.1_2072426_2072930_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP023899.1_2072916_2073219_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP023899.1_2073269_2073713_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP023899.1_2073692_2074211_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP023899.1_2074338_2074974_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP023899.1_2075046_2076087_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP023899.1_2076291_2076867_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP023899.1_2076876_2077467_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP023899.1_2077486_2077882_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP023899.1_2077839_2079876_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP023899.1_2079940_2080801_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP023899.1_2080843_2081935_-	pfam00419, Fimbrial, Fimbrial protein	NA|232aa|down_6|NZ_CP023899.1_2085268_2085964_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|195aa|down_7|NZ_CP023899.1_2086043_2086628_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_8|NZ_CP023899.1_2087028_2087784_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_9|NZ_CP023899.1_2087784_2088576_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	5	2121039-2121156	4	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP023899.1_2121229_2121394_-	NA|115aa|up_9|NZ_CP023899.1_2108760_2109105_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP023899.1_2109293_2110232_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP023899.1_2110330_2111320_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP023899.1_2111341_2112673_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP023899.1_2112698_2113907_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP023899.1_2113940_2116235_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP023899.1_2116248_2116638_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP023899.1_2116709_2118074_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP023899.1_2118348_2119680_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP023899.1_2119707_2121018_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP023899.1_2121229_2121394_-	NA	NA|234aa|down_1|NZ_CP023899.1_2121416_2122118_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP023899.1_2122222_2123119_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP023899.1_2123169_2123526_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP023899.1_2123767_2124133_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP023899.1_2124425_2125412_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP023899.1_2125481_2125964_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP023899.1_2126059_2126359_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP023899.1_2126348_2126753_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP023899.1_2126755_2127061_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	6	2494489-2495005	2,5,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP023899.1_2493198_2493339_-,NA	NA|434aa|up_9|NZ_CP023899.1_2483895_2485197_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP023899.1_2485244_2487479_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP023899.1_2487556_2487805_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP023899.1_2487804_2488140_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP023899.1_2488210_2489002_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP023899.1_2489229_2490867_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP023899.1_2490954_2492253_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP023899.1_2492312_2493185_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP023899.1_2493198_2493339_-	NA	NA|224aa|up_0|NZ_CP023899.1_2493477_2494149_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP023899.1_2495642_2497121_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP023899.1_2497147_2498425_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP023899.1_2498743_2499529_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP023899.1_2499598_2501053_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP023899.1_2501074_2502484_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP023899.1_2502461_2503241_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP023899.1_2503237_2504098_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP023899.1_2504245_2504821_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP023899.1_2504837_2505098_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP023899.1_2505088_2506360_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	7	2517390-2517968	6,3,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,28,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|NZ_CP023899.1_2505088_2506360_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_8|NZ_CP023899.1_2506437_2506800_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP023899.1_2507118_2508918_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP023899.1_2508917_2510630_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP023899.1_2510703_2511438_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP023899.1_2511702_2511855_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP023899.1_2514705_2515452_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP023899.1_2515433_2516084_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP023899.1_2516080_2517004_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP023899.1_2517000_2517294_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP023899.1_2518049_2519087_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP023899.1_2519338_2520247_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP023899.1_2520248_2521676_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP023899.1_2521675_2522281_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP023899.1_2522330_2522654_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP023899.1_2522847_2523159_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP023899.1_2523177_2523888_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP023899.1_2523887_2524367_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP023899.1_2524363_2525413_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP023899.1_2525393_2526155_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	8	3019289-3019406	7	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|105aa|up_3|NZ_CP023899.1_3014369_3014684_-,NA	NA|300aa|up_9|NZ_CP023899.1_3006282_3007182_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP023899.1_3007374_3008565_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP023899.1_3008561_3009821_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP023899.1_3009810_3011439_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP023899.1_3011711_3013070_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP023899.1_3013074_3014151_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP023899.1_3014369_3014684_-	NA	NA|217aa|up_2|NZ_CP023899.1_3017103_3017754_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP023899.1_3017807_3018062_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP023899.1_3018061_3019192_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP023899.1_3019425_3021711_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP023899.1_3022406_3026159_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP023899.1_3026286_3027009_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP023899.1_3027155_3029783_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP023899.1_3029931_3031620_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP023899.1_3031616_3032240_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP023899.1_3032383_3036778_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP023899.1_3036778_3038428_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP023899.1_3038432_3039209_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP023899.1_3039282_3040467_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	9	3615978-3616101	8	CRISPRCasFinder	no	DEDDh	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP023899.1_3624997_3625087_+	NA|471aa|up_9|NZ_CP023899.1_3605432_3606845_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP023899.1_3607400_3607610_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP023899.1_3608065_3608692_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP023899.1_3608712_3610815_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP023899.1_3610827_3611466_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP023899.1_3611529_3612198_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP023899.1_3612194_3612980_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP023899.1_3612983_3613796_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP023899.1_3613807_3615412_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP023899.1_3615537_3615843_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP023899.1_3616415_3617672_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP023899.1_3617712_3619086_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP023899.1_3619300_3619942_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP023899.1_3619981_3621130_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP023899.1_3621420_3622632_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP023899.1_3622744_3623677_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP023899.1_3623673_3624699_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP023899.1_3624997_3625087_+	NA	NA|390aa|down_8|NZ_CP023899.1_3625252_3626422_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP023899.1_3626567_3627149_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	10	4271197-4271288	9	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|503aa|up_9|NZ_CP023899.1_4258781_4260290_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP023899.1_4260711_4264674_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP023899.1_4264713_4265352_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP023899.1_4265639_4266731_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP023899.1_4266730_4267423_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP023899.1_4267434_4267821_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP023899.1_4267828_4268629_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP023899.1_4268638_4269229_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP023899.1_4269239_4269734_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP023899.1_4269754_4271083_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP023899.1_4271711_4272308_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP023899.1_4272328_4272556_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP023899.1_4272593_4273835_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP023899.1_4274126_4275386_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP023899.1_4275645_4276566_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP023899.1_4276565_4276871_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP023899.1_4276963_4277563_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP023899.1_4277559_4280106_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP023899.1_4280105_4281278_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP023899.1_4281407_4282100_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002589795.1_ASM258979v1	NZ_CP023899	Escherichia coli strain FDAARGOS_433 chromosome, complete genome	11	4593082-4593226	10	CRISPRCasFinder	no		DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|94aa|up_6|NZ_CP023899.1_4588467_4588749_+,NA|201aa|up_4|NZ_CP023899.1_4589279_4589882_-,NA|56aa|up_3|NZ_CP023899.1_4590124_4590292_+,NA	NA|227aa|up_9|NZ_CP023899.1_4587433_4588114_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP023899.1_4588110_4588293_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP023899.1_4588265_4588457_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_CP023899.1_4588467_4588749_+	NA	NA|74aa|up_5|NZ_CP023899.1_4588847_4589069_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_CP023899.1_4589279_4589882_-	NA	NA|56aa|up_3|NZ_CP023899.1_4590124_4590292_+	NA	NA|73aa|up_2|NZ_CP023899.1_4590331_4590550_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP023899.1_4590527_4591598_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP023899.1_4591732_4593016_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP023899.1_4593249_4595511_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP023899.1_4595693_4597127_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP023899.1_4597202_4598255_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP023899.1_4598438_4599392_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP023899.1_4599432_4600428_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP023899.1_4600582_4601401_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP023899.1_4601401_4602460_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP023899.1_4602462_4603152_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP023899.1_4603151_4603925_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP023899.1_4604091_4604241_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002589795.1_ASM258979v1	NZ_CP023896	Escherichia coli strain FDAARGOS_433 plasmid unnamed3, complete sequence	1	74464-74537	1	CRISPRCasFinder	no			Orphan	GATTTCTTTCGCATTAGCCTCGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|265aa|up_7|NZ_CP023896.1_63129_63924_+,NA|106aa|up_6|NZ_CP023896.1_63953_64271_-,NA|122aa|up_4|NZ_CP023896.1_67260_67626_-,NA|145aa|up_3|NZ_CP023896.1_69801_70236_-,NA|279aa|up_2|NZ_CP023896.1_70314_71151_-,NA|119aa|up_0|NZ_CP023896.1_72580_72937_-,NA|294aa|down_0|NZ_CP023896.1_76758_77640_-,NA|204aa|down_1|NZ_CP023896.1_77654_78266_-,NA|189aa|down_2|NZ_CP023896.1_78276_78843_-,NA|74aa|down_5|NZ_CP023896.1_80598_80820_+,NA|282aa|down_8|NZ_CP023896.1_82844_83690_+	NA|186aa|up_9|NZ_CP023896.1_61712_62270_-	cd16901, lyz_P1, P1 lysozyme Lyz-like proteins	NA|163aa|up_8|NZ_CP023896.1_62438_62927_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|265aa|up_7|NZ_CP023896.1_63129_63924_+	NA	NA|106aa|up_6|NZ_CP023896.1_63953_64271_-	NA	NA|996aa|up_5|NZ_CP023896.1_64260_67248_-	pfam18763, ddrB-ParB, ddrB-like ParB superfamily domain	NA|122aa|up_4|NZ_CP023896.1_67260_67626_-	NA	NA|145aa|up_3|NZ_CP023896.1_69801_70236_-	NA	NA|279aa|up_2|NZ_CP023896.1_70314_71151_-	NA	NA|478aa|up_1|NZ_CP023896.1_71150_72584_-	PHA02553, 6, baseplate wedge subunit; Provisional	NA|119aa|up_0|NZ_CP023896.1_72580_72937_-	NA	NA|294aa|down_0|NZ_CP023896.1_76758_77640_-	NA	NA|204aa|down_1|NZ_CP023896.1_77654_78266_-	NA	NA|189aa|down_2|NZ_CP023896.1_78276_78843_-	NA	NA|180aa|down_3|NZ_CP023896.1_78923_79463_-	pfam17358, DUF5384, Family of unknown function (DUF5384)	NA|171aa|down_4|NZ_CP023896.1_79466_79979_-	pfam05818, TraT, Enterobacterial TraT complement resistance protein	NA|74aa|down_5|NZ_CP023896.1_80598_80820_+	NA	NA|345aa|down_6|NZ_CP023896.1_80816_81851_+	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|267aa|down_7|NZ_CP023896.1_82014_82815_+	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|282aa|down_8|NZ_CP023896.1_82844_83690_+	NA	NA|NA	NA
