assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002587005.1_ASM258700v1	NZ_CP023815	Escherichia coli strain IMT16316 chromosome, complete genome	1	79941-80088	1,1	CRISPRCasFinder,PILER-CR	no		DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|431aa|up_9|NZ_CP023815.1_64979_66272_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP023815.1_66362_67706_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP023815.1_67716_68328_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1357aa|up_6|NZ_CP023815.1_68486_72557_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP023815.1_72691_73186_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP023815.1_73729_74695_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP023815.1_74817_76584_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP023815.1_76584_78306_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP023815.1_78347_79052_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP023815.1_79336_79555_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP023815.1_80302_82579_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP023815.1_82609_82930_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP023815.1_83252_83477_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP023815.1_83549_85496_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP023815.1_85492_86608_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP023815.1_86758_87715_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP023815.1_87711_89370_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP023815.1_89795_90491_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP023815.1_90948_91848_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP023815.1_91990_93643_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002587005.1_ASM258700v1	NZ_CP023815	Escherichia coli strain IMT16316 chromosome, complete genome	2	1232504-1232653	2	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|528aa|down_6|NZ_CP023815.1_1239869_1241453_-	NA|340aa|up_9|NZ_CP023815.1_1220696_1221716_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP023815.1_1221719_1222283_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP023815.1_1222499_1223531_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP023815.1_1223554_1224319_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP023815.1_1224381_1225701_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP023815.1_1225767_1226766_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP023815.1_1226843_1228346_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP023815.1_1228506_1229589_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP023815.1_1229588_1230689_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP023815.1_1230955_1232467_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP023815.1_1232820_1233264_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP023815.1_1233263_1236119_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP023815.1_1236172_1237369_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP023815.1_1237561_1238065_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP023815.1_1238110_1238527_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|338aa|down_5|NZ_CP023815.1_1238688_1239702_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|528aa|down_6|NZ_CP023815.1_1239869_1241453_-	NA	NA|151aa|down_7|NZ_CP023815.1_1241575_1242028_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP023815.1_1242172_1242766_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP023815.1_1242836_1243550_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_002587005.1_ASM258700v1	NZ_CP023815	Escherichia coli strain IMT16316 chromosome, complete genome	3	2992302-2993736	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	2	2	2993308-2993340|2993309-2993340	NZ_CP023815.1_2972502-2972470|NZ_CP023815.1_2972501-2972470	I-E:I-E:I-E	23,23,23	23	Unclear	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|919aa|up_9|NZ_CP023815.1_2978894_2981651_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP023815.1_2981707_2983009_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP023815.1_2983056_2985291_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP023815.1_2985368_2985617_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP023815.1_2985616_2985952_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP023815.1_2986023_2986815_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP023815.1_2987042_2988680_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP023815.1_2988766_2990065_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP023815.1_2990124_2990997_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP023815.1_2991290_2991962_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP023815.1_2994373_2995852_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP023815.1_2995878_2997156_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP023815.1_2997474_2998260_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP023815.1_2998329_2999784_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP023815.1_2999877_3001215_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP023815.1_3001192_3001972_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP023815.1_3002975_3003551_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP023815.1_3003567_3003828_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP023815.1_3003818_3005090_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|NZ_CP023815.1_3005167_3005533_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_002587005.1_ASM258700v1	NZ_CP023815	Escherichia coli strain IMT16316 chromosome, complete genome	4	3019283-3020105	4,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	TypeI-E	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|571aa|up_9|NZ_CP023815.1_3007647_3009360_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP023815.1_3009433_3010168_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP023815.1_3010526_3013193_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP023815.1_3013607_3015116_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP023815.1_3015108_3015591_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP023815.1_3015603_3016695_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP023815.1_3016697_3017372_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP023815.1_3017358_3017958_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP023815.1_3017973_3018891_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP023815.1_3018892_3019177_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP023815.1_3020186_3021224_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP023815.1_3021475_3022384_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP023815.1_3022385_3023813_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP023815.1_3023812_3024418_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP023815.1_3024467_3024791_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP023815.1_3024984_3025296_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP023815.1_3025314_3026025_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP023815.1_3026024_3026504_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP023815.1_3026500_3027550_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP023815.1_3027530_3028292_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002587005.1_ASM258700v1	NZ_CP023815	Escherichia coli strain IMT16316 chromosome, complete genome	5	4173947-4174070	5	CRISPRCasFinder	no	DEDDh	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_CP023815.1_4182966_4183056_+	NA|471aa|up_9|NZ_CP023815.1_4163399_4164812_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP023815.1_4165368_4165578_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP023815.1_4166033_4166660_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP023815.1_4166680_4168783_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP023815.1_4168786_4169434_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP023815.1_4169497_4170166_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP023815.1_4170162_4170948_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP023815.1_4170951_4171764_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP023815.1_4171775_4173380_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP023815.1_4173505_4173811_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP023815.1_4174384_4175641_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP023815.1_4175681_4177055_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP023815.1_4177269_4177911_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP023815.1_4177950_4179099_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP023815.1_4179389_4180601_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP023815.1_4180713_4181646_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP023815.1_4181642_4182668_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP023815.1_4182966_4183056_+	NA	NA|390aa|down_8|NZ_CP023815.1_4183221_4184391_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP023815.1_4184536_4185118_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002587005.1_ASM258700v1	NZ_CP023815	Escherichia coli strain IMT16316 chromosome, complete genome	6	4869241-4869332	6	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|70aa|up_9|NZ_CP023815.1_4858491_4858701_-,NA	NA|70aa|up_9|NZ_CP023815.1_4858491_4858701_-	NA	NA|1321aa|up_8|NZ_CP023815.1_4858755_4862718_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP023815.1_4862757_4863396_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP023815.1_4863683_4864775_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP023815.1_4864774_4865467_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP023815.1_4865478_4865865_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP023815.1_4865872_4866673_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP023815.1_4866682_4867273_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP023815.1_4867283_4867778_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP023815.1_4867798_4869127_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP023815.1_4869755_4870352_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP023815.1_4870372_4870600_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP023815.1_4870637_4871879_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP023815.1_4872171_4873428_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP023815.1_4873687_4874608_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP023815.1_4874607_4874913_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP023815.1_4875064_4875664_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP023815.1_4875660_4878207_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP023815.1_4878206_4879379_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP023815.1_4879508_4880201_+	PRK10766, PRK10766, two-component system response regulator TorR
