assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002557755.1_ASM255775v1	NZ_CP023769	Streptococcus pyogenes strain HarveyGAS chromosome, complete genome	1	366106-366215	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	ATCAGGATTTAGAAGGTACAGAACAGACAGAT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|151aa|up_5|NZ_CP023769.1_359406_359859_+,NA|158aa|up_4|NZ_CP023769.1_361873_362347_+,NA|84aa|up_3|NZ_CP023769.1_362599_362851_+,NA|167aa|up_2|NZ_CP023769.1_363223_363724_-,NA|46aa|up_0|NZ_CP023769.1_364891_365029_-,NA|84aa|down_6|NZ_CP023769.1_372730_372982_+,NA|114aa|down_8|NZ_CP023769.1_373847_374189_+	NA|338aa|up_9|NZ_CP023769.1_354340_355354_+	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional	NA|163aa|up_8|NZ_CP023769.1_355357_355846_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_7|NZ_CP023769.1_355812_357993_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_6|NZ_CP023769.1_358197_358950_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|151aa|up_5|NZ_CP023769.1_359406_359859_+	NA	NA|158aa|up_4|NZ_CP023769.1_361873_362347_+	NA	NA|84aa|up_3|NZ_CP023769.1_362599_362851_+	NA	NA|167aa|up_2|NZ_CP023769.1_363223_363724_-	NA	NA|233aa|up_1|NZ_CP023769.1_363991_364690_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|46aa|up_0|NZ_CP023769.1_364891_365029_-	NA	NA|79aa|down_0|NZ_CP023769.1_366958_367195_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_1|NZ_CP023769.1_367187_367886_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_2|NZ_CP023769.1_367961_368921_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_3|NZ_CP023769.1_369253_370591_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_4|NZ_CP023769.1_370763_372146_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_5|NZ_CP023769.1_372176_372731_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|84aa|down_6|NZ_CP023769.1_372730_372982_+	NA	NA|232aa|down_7|NZ_CP023769.1_373001_373697_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|114aa|down_8|NZ_CP023769.1_373847_374189_+	NA	NA|216aa|down_9|NZ_CP023769.1_374286_374934_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]
GCF_002557755.1_ASM255775v1	NZ_CP023769	Streptococcus pyogenes strain HarveyGAS chromosome, complete genome	2	777017-777250	2,1	CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36	0	0	NA	NA	II-A:II-A	3,3	3	TypeII-A,TypeII-C,TypeII-B	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_CP023769.1_766511_767153_+,NA	NA|452aa|up_9|NZ_CP023769.1_765032_766388_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP023769.1_766511_767153_+	NA	NA|377aa|up_7|NZ_CP023769.1_767215_768346_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP023769.1_768355_769108_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP023769.1_769107_769872_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP023769.1_769871_770504_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP023769.1_770948_775055_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP023769.1_775054_775924_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP023769.1_775920_776262_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP023769.1_776251_776914_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|378aa|down_0|NZ_CP023769.1_777398_778532_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|611aa|down_1|NZ_CP023769.1_778700_780533_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|146aa|down_2|NZ_CP023769.1_782118_782556_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_CP023769.1_782685_783705_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_CP023769.1_783911_784337_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_CP023769.1_784355_784847_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_CP023769.1_784863_785673_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_CP023769.1_785669_786497_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_CP023769.1_786632_788282_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_CP023769.1_788285_789074_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_002557755.1_ASM255775v1	NZ_CP023769	Streptococcus pyogenes strain HarveyGAS chromosome, complete genome	3	1100724-1100843	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	GCAGCTTCTTCTGATTGTAAAGCGTCTGTTTGATCC	36	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|141aa|up_9|NZ_CP023769.1_1090183_1090606_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|179aa|up_8|NZ_CP023769.1_1090625_1091162_-	COG4283, COG4283, Uncharacterized conserved protein [Function unknown]	NA|545aa|up_7|NZ_CP023769.1_1091317_1092952_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|484aa|up_6|NZ_CP023769.1_1093033_1094485_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|164aa|up_5|NZ_CP023769.1_1094692_1095184_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|428aa|up_4|NZ_CP023769.1_1095176_1096460_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|322aa|up_3|NZ_CP023769.1_1096570_1097536_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|287aa|up_2|NZ_CP023769.1_1097537_1098398_-	PRK07281, PRK07281, methionyl aminopeptidase	NA|428aa|up_1|NZ_CP023769.1_1098413_1099697_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|181aa|up_0|NZ_CP023769.1_1099705_1100248_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|420aa|down_0|NZ_CP023769.1_1101496_1102756_-	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed	NA|399aa|down_1|NZ_CP023769.1_1102929_1104126_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|793aa|down_2|NZ_CP023769.1_1104661_1107040_-	COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	NA|314aa|down_3|NZ_CP023769.1_1107243_1108185_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|68aa|down_4|NZ_CP023769.1_1108159_1108363_-	pfam11676, DUF3272, Protein of unknown function (DUF3272)	NA|378aa|down_5|NZ_CP023769.1_1108504_1109638_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|562aa|down_6|NZ_CP023769.1_1109907_1111593_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|166aa|down_7|NZ_CP023769.1_1111592_1112090_-	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|270aa|down_8|NZ_CP023769.1_1112234_1113044_+	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]	NA|88aa|down_9|NZ_CP023769.1_1113096_1113360_-	COG3326, COG3326, Predicted membrane protein [Function unknown]
GCF_002557755.1_ASM255775v1	NZ_CP023769	Streptococcus pyogenes strain HarveyGAS chromosome, complete genome	4	1229007-1229169	1	PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACTCACCCATGAAGGGTGAGACT	33	0	0	NA	NA	I-C	2	2	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|188aa|down_8|NZ_CP023769.1_1240139_1240703_-	NA|412aa|up_9|NZ_CP023769.1_1218940_1220176_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_CP023769.1_1220449_1221130_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_CP023769.1_1221271_1221745_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_CP023769.1_1221910_1222627_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_CP023769.1_1222640_1223720_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_CP023769.1_1223792_1225526_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_CP023769.1_1225522_1226263_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_CP023769.1_1226350_1227457_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP023769.1_1227499_1228123_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP023769.1_1228135_1228846_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP023769.1_1229316_1229610_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP023769.1_1229620_1230646_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP023769.1_1230642_1231317_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP023769.1_1231318_1232167_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_CP023769.1_1232171_1234067_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_CP023769.1_1234066_1234795_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_CP023769.1_1234927_1237336_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_CP023769.1_1237489_1240138_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_CP023769.1_1240139_1240703_-	NA	NA|132aa|down_9|NZ_CP023769.1_1241304_1241700_-	PRK07758, PRK07758, hypothetical protein; Provisional
GCF_002557755.1_ASM255775v1	NZ_CP023769	Streptococcus pyogenes strain HarveyGAS chromosome, complete genome	5	1810712-1810808	4	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|NZ_CP023769.1_1805817_1805991_-,NA|538aa|up_8|NZ_CP023769.1_1806277_1807891_-,NA|174aa|up_7|NZ_CP023769.1_1807880_1808402_-,NA|123aa|up_6|NZ_CP023769.1_1808411_1808780_-,NA|64aa|up_5|NZ_CP023769.1_1808688_1808880_-,NA|111aa|up_4|NZ_CP023769.1_1808879_1809212_-,NA|61aa|up_3|NZ_CP023769.1_1809223_1809406_-,NA|81aa|up_2|NZ_CP023769.1_1809626_1809869_-,NA	NA|58aa|up_9|NZ_CP023769.1_1805817_1805991_-	NA	NA|538aa|up_8|NZ_CP023769.1_1806277_1807891_-	NA	NA|174aa|up_7|NZ_CP023769.1_1807880_1808402_-	NA	NA|123aa|up_6|NZ_CP023769.1_1808411_1808780_-	NA	NA|64aa|up_5|NZ_CP023769.1_1808688_1808880_-	NA	NA|111aa|up_4|NZ_CP023769.1_1808879_1809212_-	NA	NA|61aa|up_3|NZ_CP023769.1_1809223_1809406_-	NA	NA|81aa|up_2|NZ_CP023769.1_1809626_1809869_-	NA	NA|189aa|up_1|NZ_CP023769.1_1809925_1810492_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NZ_CP023769.1_1810507_1810696_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NZ_CP023769.1_1810864_1811308_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|NZ_CP023769.1_1811487_1812651_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|NZ_CP023769.1_1812807_1813419_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|NZ_CP023769.1_1814148_1814421_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|NZ_CP023769.1_1814437_1815805_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|NZ_CP023769.1_1815834_1816287_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|NZ_CP023769.1_1816283_1818260_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|NZ_CP023769.1_1818349_1820248_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|NZ_CP023769.1_1820371_1820689_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|NZ_CP023769.1_1821464_1822586_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
