The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023635	Mycobacterium tuberculosis strain TBDM2489 chromosome, complete genome	4411369	2941028	2976394	4411369	integrase,capsid,terminase,protease,tRNA,head,transposase	Tupanvirus(11.11%)	41	2969829:2969856	2980811:2980838
WP_003413486.1|2941028_2943107_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943215_2943443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943439_2944825_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945169_2945670_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945686_2946127_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946273_2946951_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946935_2947289_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947301_2947727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947723_2948398_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948475_2949297_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949432_2950326_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950328_2951147_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951161_2952343_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952401_2952833_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953346_2954588_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954897_2955260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955606_2956731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956732_2957272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957411_2958710_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958748_2959030_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959174_2959660_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959686_2959944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959944_2962281_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962309_2962552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962552_2963230_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963425_2964082_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964244_2964691_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964865_2965198_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965317_2965677_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965778_2966237_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966372_2966753_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966749_2968246_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968435_2968672_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968744_2968918_+	hypothetical protein	NA	NA	NA	NA	NA
2969829:2969856	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969962_2970394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970390_2971389_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971402_2971867_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971999_2973260_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973634_2975074_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975081_2975615_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975767_2976394_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980811:2980838	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023635	Mycobacterium tuberculosis strain TBDM2489 chromosome, complete genome	4411369	3710267	3796178	4411369	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710267_3711528_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711583_3711745_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711766_3713296_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713228_3714167_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714175_3715543_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715611_3716829_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716924_3718433_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718429_3719581_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719771_3720617_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721091_3721532_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721565_3722435_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722455_3723466_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723750_3724383_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724449_3725679_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725961_3727311_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727322_3728462_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728458_3729190_+	methyltransferase	NA	NA	NA	NA	NA
WP_096865691.1|3729198_3736770_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743014_3743272_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743527_3753001_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753626_3754073_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754109_3754850_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755144_3755432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755768_3766919_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767162_3767957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768038_3768410_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768307_3768526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768552_3768813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768927_3769317_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769330_3769624_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769620_3770466_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770589_3770865_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770861_3771119_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771160_3772351_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772467_3772836_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772832_3773384_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773390_3773972_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773952_3774321_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774298_3774691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774687_3777318_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777553_3778018_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778384_3780151_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780151_3780796_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780794_3781229_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781317_3784557_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784748_3786089_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786130_3787306_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787359_3787464_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787542_3788184_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788184_3788433_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788437_3789865_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789972_3790626_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790664_3792170_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792174_3793065_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793073_3794684_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794628_3794874_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794916_3796178_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
