The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023634	Mycobacterium tuberculosis strain TBDM2487 chromosome, complete genome	4411314	2941053	2976419	4411314	capsid,head,protease,tRNA,terminase,transposase,integrase	Tupanvirus(11.11%)	41	2969854:2969881	2980836:2980863
WP_003413486.1|2941053_2943132_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943240_2943468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943464_2944850_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945194_2945695_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945711_2946152_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946298_2946976_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946960_2947314_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947326_2947752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947748_2948423_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948500_2949322_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949457_2950351_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950353_2951172_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951186_2952368_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952426_2952858_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953371_2954613_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_030030838.1|2954922_2955285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955631_2956756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956757_2957297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957436_2958735_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958773_2959055_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959199_2959685_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959711_2959969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959969_2962306_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962334_2962577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096876979.1|2962577_2963255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413654.1|2963450_2964107_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964269_2964716_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964890_2965223_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965342_2965702_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965803_2966262_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966397_2966778_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966774_2968271_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968460_2968697_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968769_2968943_+	hypothetical protein	NA	NA	NA	NA	NA
2969854:2969881	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969987_2970419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970415_2971414_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971427_2971892_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972024_2973285_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973659_2975099_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975106_2975640_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975792_2976419_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980836:2980863	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023634	Mycobacterium tuberculosis strain TBDM2487 chromosome, complete genome	4411314	3710273	3796196	4411314	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710273_3711534_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711589_3711751_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711772_3713302_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713234_3714173_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003917150.1|3714181_3715549_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.0	3.1e-18
WP_003417415.1|3715617_3716835_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716930_3718439_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718435_3719587_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719777_3720623_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721097_3721538_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721571_3722441_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722461_3723472_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723756_3724389_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724455_3725685_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725967_3727317_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727328_3728468_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728464_3729196_+	methyltransferase	NA	NA	NA	NA	NA
WP_096876986.1|3729204_3736776_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743032_3743290_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743545_3753019_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753644_3754091_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754127_3754868_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755162_3755450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031703197.1|3755786_3766937_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767180_3767975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768056_3768428_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768325_3768544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768570_3768831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768945_3769335_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769348_3769642_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769638_3770484_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770607_3770883_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770879_3771137_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771178_3772369_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772485_3772854_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772850_3773402_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773408_3773990_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773970_3774339_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774316_3774709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_030031607.1|3774705_3777336_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777571_3778036_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778402_3780169_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780169_3780814_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780812_3781247_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781335_3784575_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_096876987.1|3784766_3786107_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786148_3787324_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787377_3787482_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787560_3788202_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788202_3788451_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788455_3789883_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789990_3790644_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790682_3792188_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792192_3793083_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793091_3794702_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794646_3794892_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794934_3796196_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
