The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023633	Mycobacterium tuberculosis strain TBDM2444 chromosome, complete genome	4411284	2940979	2976345	4411284	capsid,head,integrase,transposase,tRNA,protease,terminase	Tupanvirus(11.11%)	41	2969780:2969807	2980762:2980789
WP_003413486.1|2940979_2943058_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943166_2943394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943390_2944776_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945120_2945621_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003906873.1|2945637_2946078_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946224_2946902_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946886_2947240_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947252_2947678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947674_2948349_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948426_2949248_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949383_2950277_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950279_2951098_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951112_2952294_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952352_2952784_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953297_2954539_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954848_2955211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955557_2956682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956683_2957223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957362_2958661_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958699_2958981_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959125_2959611_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959637_2959895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959895_2962232_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962260_2962503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962503_2963181_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963376_2964033_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964195_2964642_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964816_2965149_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965268_2965628_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965729_2966188_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966323_2966704_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966700_2968197_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968386_2968623_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968695_2968869_+	hypothetical protein	NA	NA	NA	NA	NA
2969780:2969807	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969913_2970345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970341_2971340_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971353_2971818_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971950_2973211_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973585_2975025_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975032_2975566_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975718_2976345_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980762:2980789	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023633	Mycobacterium tuberculosis strain TBDM2444 chromosome, complete genome	4411284	3710219	3796121	4411284	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710219_3711480_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711535_3711697_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711718_3713248_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713180_3714119_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714127_3715495_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715563_3716781_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716876_3718385_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718381_3719533_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719723_3720569_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721043_3721484_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721517_3722387_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722407_3723418_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723702_3724335_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_072474075.1|3724401_3725631_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725913_3727263_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727274_3728414_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728410_3729142_+	methyltransferase	NA	NA	NA	NA	NA
WP_096876455.1|3729150_3736722_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742957_3743215_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_010886166.1|3743470_3752944_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753569_3754016_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754052_3754793_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755087_3755375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755711_3766862_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767105_3767900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767981_3768353_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768250_3768469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768495_3768756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768870_3769260_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769273_3769567_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769563_3770409_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770532_3770808_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770804_3771062_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771103_3772294_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772410_3772779_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772775_3773327_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773333_3773915_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773895_3774264_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774241_3774634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774630_3777261_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777496_3777961_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778327_3780094_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780094_3780739_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780737_3781172_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781260_3784500_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784691_3786032_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786073_3787249_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787302_3787407_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787485_3788127_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788127_3788376_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788380_3789808_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789915_3790569_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790607_3792113_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792117_3793008_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793016_3794627_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794571_3794817_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794859_3796121_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
