assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	1	366421-367119	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366709-366750|366784-366816	NZ_CP023632.1_374740-374781|NZ_CP023632.1_373555-373587	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023632.1_363433_363736_+,NA|161aa|down_1|NZ_CP023632.1_376529_377012_-,NA|410aa|down_5|NZ_CP023632.1_379128_380358_+	NA|401aa|up_9|NZ_CP023632.1_356853_358056_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|262aa|up_8|NZ_CP023632.1_358162_358948_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_7|NZ_CP023632.1_358936_359740_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_6|NZ_CP023632.1_359749_361147_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|76aa|up_5|NZ_CP023632.1_363209_363437_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023632.1_363433_363736_+	NA	NA|74aa|up_3|NZ_CP023632.1_363783_364005_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023632.1_364001_364427_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023632.1_364562_365195_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023632.1_365191_366100_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023632.1_375870_376542_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023632.1_376529_377012_-	NA	NA|239aa|down_2|NZ_CP023632.1_377069_377786_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023632.1_377887_378544_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023632.1_378613_379105_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023632.1_379128_380358_+	NA	NA|621aa|down_6|NZ_CP023632.1_380512_382375_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023632.1_382446_382833_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023632.1_382835_383498_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023632.1_383558_384443_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	2	691945-692021	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023632.1_677630_677846_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023632.1_677842_678250_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023632.1_678309_678996_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023632.1_679149_681783_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023632.1_681805_684193_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023632.1_684330_685053_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023632.1_685049_685847_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_2|NZ_CP023632.1_685994_686735_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023632.1_686740_687955_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023632.1_688978_690424_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023632.1_693156_694707_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023632.1_694758_695151_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023632.1_695147_695405_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023632.1_695587_696823_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023632.1_697073_697487_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023632.1_697483_697720_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023632.1_697823_698330_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023632.1_698443_698914_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023632.1_698957_699719_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023632.1_699775_700087_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	3	926529-927476	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927312-927347|927312-927347|927312-927347	NZ_CP023632.1_675049-675014|NZ_CP023632.1_1213613-1213648|NZ_CP023632.1_2423628-2423593	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP023632.1_931469_932021_-,NA|81aa|down_7|NZ_CP023632.1_937484_937727_+	NA|685aa|up_9|NZ_CP023632.1_914165_916220_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023632.1_916385_917555_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023632.1_917642_918659_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023632.1_918820_919462_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023632.1_919542_920598_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023632.1_920649_921042_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023632.1_921099_921522_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023632.1_921483_921774_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023632.1_921878_922784_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023632.1_922802_923618_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|215aa|down_0|NZ_CP023632.1_930844_931489_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP023632.1_931469_932021_-	NA	NA|218aa|down_2|NZ_CP023632.1_932170_932824_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP023632.1_932894_933923_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_4|NZ_CP023632.1_934611_935382_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP023632.1_935468_936281_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP023632.1_936348_937209_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NZ_CP023632.1_937484_937727_+	NA	NA|431aa|down_8|NZ_CP023632.1_938003_939296_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP023632.1_939279_940284_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	4	1191219-1191327	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023632.1_1180586_1182218_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023632.1_1182293_1183358_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023632.1_1183410_1183884_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023632.1_1183917_1184781_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023632.1_1184785_1185643_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023632.1_1185643_1186726_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023632.1_1186806_1187226_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023632.1_1187337_1187904_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023632.1_1187900_1188296_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023632.1_1188323_1190327_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023632.1_1192412_1194176_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023632.1_1194172_1194946_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023632.1_1194957_1195995_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023632.1_1196181_1197018_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023632.1_1197133_1197985_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023632.1_1198058_1199276_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023632.1_1199328_1200273_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023632.1_1200495_1201563_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023632.1_1201619_1203014_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023632.1_1203215_1203938_+	pfam06271, RDD, RDD family
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	5	1211853-1212709	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	74	1212236-1212257|1212281-1212296|1212419-1212440|1212419-1212440|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554|1212536-1212554	NZ_CP023632.1_2960392-2960371|NZ_CP023632.1_2088463-2088448|NZ_CP023632.1_837354-837375|NZ_CP023632.1_1217508-1217529|NZ_CP023632.1_674713-674695|NZ_CP023632.1_1213379-1213397|NZ_CP023632.1_1217481-1217499|NZ_CP023632.1_1217553-1217571|NZ_CP023632.1_1630556-1630538|NZ_CP023632.1_1633382-1633364|NZ_CP023632.1_1990669-1990651|NZ_CP023632.1_2061391-2061373|NZ_CP023632.1_2061838-2061820|NZ_CP023632.1_2061937-2061919|NZ_CP023632.1_2801941-2801923|NZ_CP023632.1_2805469-2805451|NZ_CP023632.1_1636777-1636759|NZ_CP023632.1_150189-150207|NZ_CP023632.1_333787-333769|NZ_CP023632.1_335206-335188|NZ_CP023632.1_335659-335641|NZ_CP023632.1_335710-335692|NZ_CP023632.1_335719-335701|NZ_CP023632.1_337992-337974|NZ_CP023632.1_338121-338103|NZ_CP023632.1_338388-338370|NZ_CP023632.1_338417-338435|NZ_CP023632.1_338511-338493|NZ_CP023632.1_363011-362993|NZ_CP023632.1_443370-443352|NZ_CP023632.1_546714-546696|NZ_CP023632.1_623904-623922|NZ_CP023632.1_624126-624144|NZ_CP023632.1_673879-673861|NZ_CP023632.1_840137-840155|NZ_CP023632.1_1090882-1090900|NZ_CP023632.1_1091530-1091548|NZ_CP023632.1_1095588-1095570|NZ_CP023632.1_1212908-1212926|NZ_CP023632.1_1213298-1213316|NZ_CP023632.1_1217901-1217919|NZ_CP023632.1_1489077-1489059|NZ_CP023632.1_1618520-1618502|NZ_CP023632.1_1618973-1618955|NZ_CP023632.1_1635895-1635877|NZ_CP023632.1_1635904-1635886|NZ_CP023632.1_1864169-1864151|NZ_CP023632.1_1864688-1864670|NZ_CP023632.1_1989943-1989925|NZ_CP023632.1_2001303-2001321|NZ_CP023632.1_2088661-2088643|NZ_CP023632.1_2303350-2303332|NZ_CP023632.1_2356802-2356784|NZ_CP023632.1_2419454-2419472|NZ_CP023632.1_2423541-2423523|NZ_CP023632.1_2569034-2569016|NZ_CP023632.1_2693332-2693350|NZ_CP023632.1_2795256-2795238|NZ_CP023632.1_2795838-2795820|NZ_CP023632.1_3054428-3054446|NZ_CP023632.1_3054527-3054545|NZ_CP023632.1_3705333-3705351|NZ_CP023632.1_3737309-3737291|NZ_CP023632.1_3737933-3737915|NZ_CP023632.1_3738176-3738158|NZ_CP023632.1_3738309-3738291|NZ_CP023632.1_3802173-3802191|NZ_CP023632.1_3802356-3802374|NZ_CP023632.1_3802524-3802542|NZ_CP023632.1_3930334-3930352|NZ_CP023632.1_3932064-3932082|NZ_CP023632.1_3940562-3940580|NZ_CP023632.1_4031539-4031521|NZ_CP023632.1_4094065-4094083	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023632.1_1207285_1207552_+,NA|61aa|down_3|NZ_CP023632.1_1215088_1215271_+,NA|35aa|down_4|NZ_CP023632.1_1215380_1215485_+	NA|465aa|up_9|NZ_CP023632.1_1201619_1203014_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023632.1_1203215_1203938_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023632.1_1203969_1205136_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023632.1_1205206_1205701_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023632.1_1205886_1206321_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023632.1_1206422_1207289_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023632.1_1207285_1207552_+	NA	NA|674aa|up_2|NZ_CP023632.1_1207538_1209560_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023632.1_1209658_1210387_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023632.1_1210497_1211286_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023632.1_1213903_1214224_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023632.1_1214376_1214811_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023632.1_1214909_1215077_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023632.1_1215088_1215271_+	NA	NA|35aa|down_4|NZ_CP023632.1_1215380_1215485_+	NA	NA|152aa|down_5|NZ_CP023632.1_1215462_1215918_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023632.1_1216332_1218894_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023632.1_1219111_1220050_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023632.1_1220437_1221718_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023632.1_1221822_1222650_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	6	1572052-1573124	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023632.1_1563815_1564133_+,NA	NA|103aa|up_9|NZ_CP023632.1_1561330_1561639_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023632.1_1561635_1563255_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023632.1_1563815_1564133_+	NA	NA|209aa|up_6|NZ_CP023632.1_1564267_1564894_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023632.1_1564959_1565292_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023632.1_1565307_1566564_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023632.1_1566691_1567903_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023632.1_1567975_1569454_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023632.1_1569450_1570836_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023632.1_1570913_1571948_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023632.1_1573978_1574380_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023632.1_1574376_1574634_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023632.1_1574716_1575676_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023632.1_1575700_1576663_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023632.1_1576796_1577399_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023632.1_1577479_1579447_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023632.1_1579464_1580289_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023632.1_1580457_1580940_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023632.1_1581011_1581836_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023632.1_1582032_1582971_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	7	1636473-1636699	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023632.1_1622981_1623095_-,NA|137aa|up_7|NZ_CP023632.1_1623144_1623555_-,NA|288aa|down_2|NZ_CP023632.1_1640537_1641401_+	NA|162aa|up_9|NZ_CP023632.1_1622064_1622550_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023632.1_1622981_1623095_-	NA	NA|137aa|up_7|NZ_CP023632.1_1623144_1623555_-	NA	NA|248aa|up_6|NZ_CP023632.1_1623571_1624315_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023632.1_1624311_1625223_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023632.1_1625275_1626820_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023632.1_1626816_1627938_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023632.1_1627954_1630057_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023632.1_1630495_1634485_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023632.1_1634886_1635813_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023632.1_1638238_1639504_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023632.1_1639531_1640518_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023632.1_1640537_1641401_+	NA	NA|311aa|down_3|NZ_CP023632.1_1641350_1642283_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023632.1_1642394_1643180_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023632.1_1643176_1644118_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023632.1_1644220_1645996_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023632.1_1646043_1646850_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023632.1_1646846_1649387_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023632.1_1649383_1650577_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	8	2088133-2088387	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088214-2088231|2088214-2088231|2088304-2088321	NZ_CP023632.1_401036-401019|NZ_CP023632.1_607359-607342|NZ_CP023632.1_3450034-3450017	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023632.1_2087492_2087756_-,NA	NA|165aa|up_9|NZ_CP023632.1_2073786_2074281_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023632.1_2074684_2075362_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023632.1_2075720_2078546_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023632.1_2078772_2079633_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023632.1_2079673_2080540_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023632.1_2080544_2082431_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023632.1_2082446_2084480_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023632.1_2084599_2086825_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023632.1_2087100_2087496_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023632.1_2087492_2087756_-	NA	NA|346aa|down_0|NZ_CP023632.1_2089524_2090562_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023632.1_2090561_2091929_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023632.1_2092102_2093539_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023632.1_2093574_2095026_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023632.1_2095055_2096006_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023632.1_2096020_2096437_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023632.1_2096714_2097137_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023632.1_2097185_2097488_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023632.1_2097484_2097799_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023632.1_2097798_2099532_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	9	2163214-2163318	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023632.1_2159758_2160166_-,NA|127aa|down_6|NZ_CP023632.1_2176387_2176768_-	NA|216aa|up_9|NZ_CP023632.1_2153072_2153720_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023632.1_2153726_2155949_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023632.1_2155986_2156430_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023632.1_2156543_2157137_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023632.1_2157219_2157825_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023632.1_2157924_2158929_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023632.1_2159028_2159781_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023632.1_2159758_2160166_-	NA	NA|368aa|up_1|NZ_CP023632.1_2160300_2161404_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023632.1_2161403_2162600_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023632.1_2167486_2170450_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023632.1_2170898_2171363_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023632.1_2171460_2172324_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023632.1_2172361_2173633_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023632.1_2173904_2175020_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023632.1_2175010_2176351_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023632.1_2176387_2176768_-	NA	NA|621aa|down_7|NZ_CP023632.1_2176924_2178787_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023632.1_2178794_2179274_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023632.1_2179510_2180284_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	10	2168652-2168871	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023632.1_2159758_2160166_-,NA|127aa|down_5|NZ_CP023632.1_2176387_2176768_-	NA|741aa|up_9|NZ_CP023632.1_2153726_2155949_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023632.1_2155986_2156430_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023632.1_2156543_2157137_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023632.1_2157219_2157825_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023632.1_2157924_2158929_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023632.1_2159028_2159781_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023632.1_2159758_2160166_-	NA	NA|368aa|up_2|NZ_CP023632.1_2160300_2161404_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023632.1_2161403_2162600_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023632.1_2162769_2167149_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023632.1_2170898_2171363_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023632.1_2171460_2172324_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023632.1_2172361_2173633_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023632.1_2173904_2175020_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023632.1_2175010_2176351_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023632.1_2176387_2176768_-	NA	NA|621aa|down_6|NZ_CP023632.1_2176924_2178787_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023632.1_2178794_2179274_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023632.1_2179510_2180284_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023632.1_2180287_2181055_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	11	3119010-3120364	2,8,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023632.1_3112289_3112544_-,NA|135aa|up_7|NZ_CP023632.1_3112691_3113096_+,NA|64aa|up_6|NZ_CP023632.1_3113092_3113284_+,NA|86aa|up_4|NZ_CP023632.1_3114870_3115128_+,NA|104aa|up_3|NZ_CP023632.1_3115232_3115544_+,NA|203aa|up_2|NZ_CP023632.1_3115963_3116572_+,NA	NA|92aa|up_9|NZ_CP023632.1_3111838_3112114_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023632.1_3112289_3112544_-	NA	NA|135aa|up_7|NZ_CP023632.1_3112691_3113096_+	NA	NA|64aa|up_6|NZ_CP023632.1_3113092_3113284_+	NA	NA|385aa|up_5|NZ_CP023632.1_3113482_3114637_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023632.1_3114870_3115128_+	NA	NA|104aa|up_3|NZ_CP023632.1_3115232_3115544_+	NA	NA|203aa|up_2|NZ_CP023632.1_3115963_3116572_+	NA	NA|470aa|up_1|NZ_CP023632.1_3116642_3118052_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023632.1_3118048_3118861_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023632.1_3120390_3121652_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023632.1_3123449_3123791_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023632.1_3123791_3124808_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023632.1_3124820_3125969_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023632.1_3126064_3127192_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023632.1_3127188_3128097_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023632.1_3128077_3128788_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023632.1_3128797_3129172_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023632.1_3129168_3131607_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023632.1_3131603_3132326_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	12	3121687-3123401	9,4,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023632.1_3112289_3112544_-,NA|135aa|up_8|NZ_CP023632.1_3112691_3113096_+,NA|64aa|up_7|NZ_CP023632.1_3113092_3113284_+,NA|86aa|up_5|NZ_CP023632.1_3114870_3115128_+,NA|104aa|up_4|NZ_CP023632.1_3115232_3115544_+,NA|203aa|up_3|NZ_CP023632.1_3115963_3116572_+,NA	NA|85aa|up_9|NZ_CP023632.1_3112289_3112544_-	NA	NA|135aa|up_8|NZ_CP023632.1_3112691_3113096_+	NA	NA|64aa|up_7|NZ_CP023632.1_3113092_3113284_+	NA	NA|385aa|up_6|NZ_CP023632.1_3113482_3114637_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023632.1_3114870_3115128_+	NA	NA|104aa|up_4|NZ_CP023632.1_3115232_3115544_+	NA	NA|203aa|up_3|NZ_CP023632.1_3115963_3116572_+	NA	NA|470aa|up_2|NZ_CP023632.1_3116642_3118052_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023632.1_3118048_3118861_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023632.1_3120390_3121652_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023632.1_3123449_3123791_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023632.1_3123791_3124808_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023632.1_3124820_3125969_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023632.1_3126064_3127192_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023632.1_3127188_3128097_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023632.1_3128077_3128788_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023632.1_3128797_3129172_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023632.1_3129168_3131607_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023632.1_3131603_3132326_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023632.1_3132725_3133271_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	13	3740503-3741044	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023632.1_3755145_3755433_-,NA|87aa|down_9|NZ_CP023632.1_3768554_3768815_-	NA|384aa|up_9|NZ_CP023632.1_3718413_3719565_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NZ_CP023632.1_3719755_3720601_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NZ_CP023632.1_3721075_3721516_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NZ_CP023632.1_3721549_3722419_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NZ_CP023632.1_3722439_3723450_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_4|NZ_CP023632.1_3723734_3724367_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_3|NZ_CP023632.1_3724433_3725663_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NZ_CP023632.1_3725945_3727295_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NZ_CP023632.1_3727306_3728446_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NZ_CP023632.1_3728442_3729174_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|down_0|NZ_CP023632.1_3743015_3743273_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023632.1_3743528_3753002_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023632.1_3753627_3754074_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023632.1_3754110_3754851_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023632.1_3755145_3755433_-	NA	NA|3717aa|down_5|NZ_CP023632.1_3755769_3766920_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023632.1_3767164_3767959_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023632.1_3768040_3768412_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023632.1_3768309_3768528_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023632.1_3768554_3768815_-	NA
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	14	3948169-3949920	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948760-3948795|3948760-3948795|3948760-3948795|3948760-3948795|3948760-3948795|3949651-3949677|3949651-3949677|3949651-3949677|3949651-3949677	NZ_CP023632.1_3946877-3946912|NZ_CP023632.1_3947218-3947253|NZ_CP023632.1_3947809-3947844|NZ_CP023632.1_3948160-3948195|NZ_CP023632.1_3932619-3932654|NZ_CP023632.1_361985-362011|NZ_CP023632.1_3941063-3941089|NZ_CP023632.1_3941399-3941425|NZ_CP023632.1_3941745-3941771	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023632.1_3953235_3954075_+	NA|318aa|up_9|NZ_CP023632.1_3920901_3921855_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023632.1_3921879_3922071_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023632.1_3922285_3923488_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023632.1_3923512_3924634_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023632.1_3924704_3926213_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023632.1_3926383_3930529_+	pfam00934, PE, PE family	NA|1899aa|up_3|NZ_CP023632.1_3930819_3936516_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023632.1_3936682_3938230_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023632.1_3938226_3939063_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023632.1_3944897_3945554_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023632.1_3950628_3952275_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023632.1_3952348_3953140_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023632.1_3953235_3954075_+	NA	NA|399aa|down_3|NZ_CP023632.1_3954129_3955326_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023632.1_3955354_3956065_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023632.1_3956129_3957173_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023632.1_3957325_3958237_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023632.1_3958252_3959317_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023632.1_3959333_3960518_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023632.1_3960559_3961591_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	15	3998340-3998499	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	1	1	3998409-3998429	NZ_CP023632.1_430128-430108	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023632.1_4007971_4008238_-,NA|57aa|down_9|NZ_CP023632.1_4008268_4008439_-	NA|305aa|up_9|NZ_CP023632.1_3987186_3988101_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023632.1_3988123_3988903_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023632.1_3988957_3989701_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023632.1_3989700_3990579_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023632.1_3990575_3991328_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023632.1_3991425_3992493_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023632.1_3992489_3994547_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023632.1_3994634_3995504_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023632.1_3995608_3996769_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023632.1_3996833_3997436_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023632.1_3999451_4000240_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023632.1_4000236_4001394_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023632.1_4001441_4002965_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023632.1_4002965_4004099_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023632.1_4004095_4005055_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023632.1_4005051_4006008_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023632.1_4006004_4007171_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023632.1_4007135_4007987_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023632.1_4007971_4008238_-	NA	NA|57aa|down_9|NZ_CP023632.1_4008268_4008439_-	NA
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	16	3998568-3998945	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	3	62	3998592-3998612|3998592-3998612|3998592-3998612|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998637-3998657|3998682-3998702|3998682-3998702|3998682-3998702|3998682-3998702	NZ_CP023632.1_427071-427051|NZ_CP023632.1_427101-427081|NZ_CP023632.1_431385-431365|NZ_CP023632.1_2922825-2922845|NZ_CP023632.1_132299-132319|NZ_CP023632.1_336647-336627|NZ_CP023632.1_528178-528158|NZ_CP023632.1_673083-673063|NZ_CP023632.1_673092-673072|NZ_CP023632.1_673143-673123|NZ_CP023632.1_673152-673132|NZ_CP023632.1_673263-673243|NZ_CP023632.1_673986-673966|NZ_CP023632.1_836857-836877|NZ_CP023632.1_837865-837885|NZ_CP023632.1_839313-839333|NZ_CP023632.1_840636-840656|NZ_CP023632.1_927944-927924|NZ_CP023632.1_968554-968534|NZ_CP023632.1_1091909-1091929|NZ_CP023632.1_1188446-1188426|NZ_CP023632.1_1188500-1188480|NZ_CP023632.1_1385176-1385156|NZ_CP023632.1_1618294-1618274|NZ_CP023632.1_1633042-1633022|NZ_CP023632.1_1991094-1991074|NZ_CP023632.1_2088486-2088466|NZ_CP023632.1_2088957-2088937|NZ_CP023632.1_2803308-2803288|NZ_CP023632.1_2922927-2922947|NZ_CP023632.1_2960103-2960083|NZ_CP023632.1_3737860-3737840|NZ_CP023632.1_3738449-3738429|NZ_CP023632.1_3738467-3738447|NZ_CP023632.1_3738518-3738498|NZ_CP023632.1_3738569-3738549|NZ_CP023632.1_3738713-3738693|NZ_CP023632.1_3739643-3739623|NZ_CP023632.1_3739820-3739800|NZ_CP023632.1_3740396-3740376|NZ_CP023632.1_3779725-3779745|NZ_CP023632.1_3927008-3927028|NZ_CP023632.1_3927104-3927124|NZ_CP023632.1_3928100-3928120|NZ_CP023632.1_3928109-3928129|NZ_CP023632.1_3928118-3928138|NZ_CP023632.1_3928127-3928147|NZ_CP023632.1_3928136-3928156|NZ_CP023632.1_3928889-3928909|NZ_CP023632.1_3929084-3929104|NZ_CP023632.1_3936190-3936210|NZ_CP023632.1_3941040-3941060|NZ_CP023632.1_3941376-3941396|NZ_CP023632.1_3941722-3941742|NZ_CP023632.1_3942364-3942384|NZ_CP023632.1_3943585-3943605|NZ_CP023632.1_3943702-3943722|NZ_CP023632.1_3944149-3944169|NZ_CP023632.1_1262690-1262670|NZ_CP023632.1_427071-427051|NZ_CP023632.1_427101-427081|NZ_CP023632.1_431385-431365	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023632.1_4007971_4008238_-,NA|57aa|down_9|NZ_CP023632.1_4008268_4008439_-	NA|305aa|up_9|NZ_CP023632.1_3987186_3988101_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023632.1_3988123_3988903_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023632.1_3988957_3989701_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023632.1_3989700_3990579_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023632.1_3990575_3991328_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023632.1_3991425_3992493_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023632.1_3992489_3994547_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023632.1_3994634_3995504_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023632.1_3995608_3996769_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023632.1_3996833_3997436_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023632.1_3999451_4000240_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023632.1_4000236_4001394_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023632.1_4001441_4002965_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023632.1_4002965_4004099_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023632.1_4004095_4005055_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023632.1_4005051_4006008_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023632.1_4006004_4007171_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023632.1_4007135_4007987_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023632.1_4007971_4008238_-	NA	NA|57aa|down_9|NZ_CP023632.1_4008268_4008439_-	NA
GCF_002448055.1_ASM244805v1	NZ_CP023632	Mycobacterium tuberculosis strain TBDM2189 chromosome, complete genome	17	4110482-4110570	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023632.1_4101068_4101839_-,NA|119aa|up_3|NZ_CP023632.1_4106973_4107330_+,NA|52aa|up_2|NZ_CP023632.1_4107429_4107585_+,NA|233aa|up_0|NZ_CP023632.1_4109586_4110285_-,NA|126aa|down_5|NZ_CP023632.1_4115801_4116179_+	NA|288aa|up_9|NZ_CP023632.1_4099450_4100314_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023632.1_4101068_4101839_-	NA	NA|549aa|up_7|NZ_CP023632.1_4101835_4103482_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023632.1_4103478_4104342_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023632.1_4104334_4105261_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023632.1_4105262_4106888_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023632.1_4106973_4107330_+	NA	NA|52aa|up_2|NZ_CP023632.1_4107429_4107585_+	NA	NA|652aa|up_1|NZ_CP023632.1_4107595_4109551_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023632.1_4109586_4110285_-	NA	NA|173aa|down_0|NZ_CP023632.1_4110630_4111149_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023632.1_4111149_4112133_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023632.1_4112125_4113319_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|228aa|down_3|NZ_CP023632.1_4114273_4114957_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_4|NZ_CP023632.1_4114956_4115694_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_5|NZ_CP023632.1_4115801_4116179_+	NA	NA|225aa|down_6|NZ_CP023632.1_4116277_4116952_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_7|NZ_CP023632.1_4117057_4117852_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_8|NZ_CP023632.1_4117858_4118314_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|54aa|down_9|NZ_CP023632.1_4118329_4118491_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)
