The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023629	Mycobacterium tuberculosis strain MDRMA2260 chromosome, complete genome	4411352	2941021	2976387	4411352	terminase,integrase,protease,transposase,head,tRNA,capsid	Tupanvirus(11.11%)	41	2969822:2969849	2980804:2980831
WP_003413486.1|2941021_2943100_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943208_2943436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943432_2944818_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945162_2945663_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945679_2946120_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946266_2946944_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946928_2947282_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947294_2947720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947716_2948391_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948468_2949290_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949425_2950319_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950321_2951140_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951154_2952336_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952394_2952826_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953339_2954581_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954890_2955253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955599_2956724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956725_2957265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957404_2958703_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958741_2959023_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959167_2959653_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959679_2959937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959937_2962274_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962302_2962545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962545_2963223_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963418_2964075_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964237_2964684_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964858_2965191_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965310_2965670_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965771_2966230_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966365_2966746_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966742_2968239_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968428_2968665_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968737_2968911_+	hypothetical protein	NA	NA	NA	NA	NA
2969822:2969849	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969955_2970387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970383_2971382_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971395_2971860_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971992_2973253_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973627_2975067_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975074_2975608_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975760_2976387_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980804:2980831	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023629	Mycobacterium tuberculosis strain MDRMA2260 chromosome, complete genome	4411352	3710260	3796189	4411352	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710260_3711521_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711576_3711738_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711759_3713289_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713221_3714160_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714168_3715536_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715604_3716822_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716917_3718426_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718422_3719574_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719764_3720610_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721084_3721525_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721558_3722428_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722448_3723459_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723743_3724376_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724442_3725672_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725954_3727304_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727315_3728455_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728451_3729183_+	methyltransferase	NA	NA	NA	NA	NA
WP_096875455.1|3729191_3736763_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743025_3743283_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743538_3753012_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753637_3754084_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754120_3754861_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755155_3755443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096875456.1|3755779_3766930_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767173_3767968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768049_3768421_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768318_3768537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768563_3768824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768938_3769328_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769341_3769635_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769631_3770477_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770600_3770876_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770872_3771130_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771171_3772362_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772478_3772847_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772843_3773395_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773401_3773983_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773963_3774332_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774309_3774702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774698_3777329_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777564_3778029_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778395_3780162_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780162_3780807_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780805_3781240_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781328_3784568_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784759_3786100_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786141_3787317_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787370_3787475_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787553_3788195_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788195_3788444_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788448_3789876_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789983_3790637_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790675_3792181_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792185_3793076_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793084_3794695_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794639_3794885_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794927_3796189_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
