The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023627	Mycobacterium tuberculosis strain MDRMA2019 chromosome, complete genome	4411229	2940916	2976281	4411229	head,transposase,capsid,terminase,tRNA,integrase,protease	Tupanvirus(11.11%)	40	2969718:2969745	2980698:2980725
WP_003413486.1|2940916_2942995_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943103_2943331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096865268.1|2943327_2944713_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945057_2945558_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003906873.1|2945574_2946015_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946161_2946839_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946823_2947177_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947189_2947615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947611_2948286_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948363_2949185_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949320_2950214_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950216_2951035_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951049_2952231_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952289_2952721_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953234_2954476_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954785_2955148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955494_2956619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956620_2957160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957299_2958598_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958636_2958918_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959062_2959548_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959574_2959832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899405.1|2962198_2962441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962441_2963119_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963314_2963971_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964133_2964580_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964754_2965087_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965206_2965566_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965667_2966126_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966261_2966642_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966638_2968135_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968324_2968561_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968633_2968807_+	hypothetical protein	NA	NA	NA	NA	NA
2969718:2969745	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969851_2970283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970279_2971278_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971291_2971756_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971888_2973149_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973521_2974961_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974968_2975502_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975654_2976281_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980698:2980725	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023627	Mycobacterium tuberculosis strain MDRMA2019 chromosome, complete genome	4411229	3710153	3796058	4411229	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710153_3711414_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711469_3711631_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711652_3713182_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_070892666.1|3713114_3714053_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714061_3715429_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715497_3716715_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716810_3718319_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718315_3719467_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719657_3720503_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720977_3721418_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721451_3722321_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722341_3723352_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723636_3724269_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724335_3725565_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725847_3727197_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727208_3728348_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728344_3729076_+	methyltransferase	NA	NA	NA	NA	NA
WP_096865259.1|3729084_3736656_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742894_3743152_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_010886166.1|3743407_3752881_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753506_3753953_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3753989_3754730_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755024_3755312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755648_3766799_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767042_3767837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767918_3768290_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768187_3768406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768432_3768693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768807_3769197_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769210_3769504_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769500_3770346_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770469_3770745_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770741_3770999_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771040_3772231_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772347_3772716_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772712_3773264_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773270_3773852_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773832_3774201_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774178_3774571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774567_3777198_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777433_3777898_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778264_3780031_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780031_3780676_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780674_3781109_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781197_3784437_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784628_3785969_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786010_3787186_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787239_3787344_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787422_3788064_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788064_3788313_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788317_3789745_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789852_3790506_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790544_3792050_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792054_3792945_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3792953_3794564_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794508_3794754_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794796_3796058_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
