The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023626	Mycobacterium tuberculosis strain MDRMA1565 chromosome, complete genome	4411159	2940910	2976277	4411159	protease,tRNA,terminase,transposase,head,integrase,capsid	Tupanvirus(11.11%)	40	2969712:2969739	2980694:2980721
WP_003413486.1|2940910_2942989_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943097_2943325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096869134.1|2943321_2944707_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945051_2945552_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945568_2946009_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946155_2946833_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946817_2947171_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947183_2947609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413589.1|2948358_2949180_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949315_2950209_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950211_2951030_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951044_2952226_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952284_2952716_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953229_2954471_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954780_2955143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2955489_2956614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956615_2957155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957294_2958593_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958631_2958913_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959057_2959543_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959569_2959827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959827_2962164_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962192_2962435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962435_2963113_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963308_2963965_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964127_2964574_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964748_2965081_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965200_2965560_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965661_2966120_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966255_2966636_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966632_2968129_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968318_2968555_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968627_2968801_+	hypothetical protein	NA	NA	NA	NA	NA
2969712:2969739	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969845_2970277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970273_2971272_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971285_2971750_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971882_2973143_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003901443.1|2973517_2974957_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974964_2975498_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975650_2976277_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980694:2980721	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023626	Mycobacterium tuberculosis strain MDRMA1565 chromosome, complete genome	4411159	3710142	3796036	4411159	transposase,tRNA	Burkholderia_virus(28.57%)	56	NA	NA
WP_087902221.1|3710142_3711403_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711458_3711620_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711641_3713171_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713103_3714042_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714050_3715418_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715486_3716704_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716799_3718308_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718304_3719456_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719646_3720492_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720966_3721407_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721440_3722310_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722330_3723341_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723625_3724258_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724324_3725554_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725836_3727186_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727197_3728337_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728333_3729065_+	methyltransferase	NA	NA	NA	NA	NA
WP_096877542.1|3729073_3736645_-	PPE family protein	NA	NA	NA	NA	NA
WP_142283279.1|3736693_3742441_-	PE domain-containing protein	NA	NA	NA	NA	NA
WP_003417619.1|3742871_3743129_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3743384_3752858_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753483_3753930_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3753966_3754707_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755001_3755289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3767018_3767813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767894_3768266_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768163_3768382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768408_3768669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768783_3769173_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769186_3769480_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769476_3770322_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770445_3770721_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770717_3770975_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771016_3772207_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772323_3772692_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772688_3773240_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773246_3773828_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773808_3774177_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774154_3774547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901616.1|3774543_3777174_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003901617.1|3777409_3777874_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778240_3780007_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780007_3780652_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780650_3781085_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_070891160.1|3781173_3784413_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.3	2.1e-118
WP_003900036.1|3784604_3785945_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3785986_3787162_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787215_3787320_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787398_3788040_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788040_3788289_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788293_3789721_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789828_3790482_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790520_3792026_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792030_3792921_-	diterpene synthase	NA	NA	NA	NA	NA
WP_078750126.1|3792929_3794723_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794774_3796036_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
