The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023622	Mycobacterium tuberculosis strain MDRDM827 chromosome, complete genome	4411315	2940977	2976343	4411315	protease,transposase,terminase,capsid,integrase,tRNA,head	Tupanvirus(11.11%)	41	2969778:2969805	2980760:2980787
WP_003413486.1|2940977_2943056_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943164_2943392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943388_2944774_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945118_2945619_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945635_2946076_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946222_2946900_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946884_2947238_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947250_2947676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947672_2948347_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948424_2949246_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949381_2950275_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950277_2951096_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951110_2952292_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952350_2952782_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953295_2954537_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954846_2955209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955555_2956680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956681_2957221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957360_2958659_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958697_2958979_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959123_2959609_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959635_2959893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959893_2962230_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962258_2962501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962501_2963179_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963374_2964031_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964193_2964640_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964814_2965147_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965266_2965626_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965727_2966186_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966321_2966702_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966698_2968195_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968384_2968621_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968693_2968867_+	hypothetical protein	NA	NA	NA	NA	NA
2969778:2969805	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969911_2970343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970339_2971338_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971351_2971816_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971948_2973209_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973583_2975023_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975030_2975564_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975716_2976343_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980760:2980787	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023622	Mycobacterium tuberculosis strain MDRDM827 chromosome, complete genome	4411315	3710215	3796126	4411315	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710215_3711476_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711531_3711693_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711714_3713244_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713176_3714115_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714123_3715491_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715559_3716777_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716872_3718381_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718377_3719529_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719719_3720565_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721039_3721480_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721513_3722383_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722403_3723414_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723698_3724331_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724397_3725627_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725909_3727259_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727270_3728410_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728406_3729138_+	methyltransferase	NA	NA	NA	NA	NA
WP_096865691.1|3729146_3736718_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742962_3743220_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743475_3752949_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753574_3754021_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754057_3754798_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755092_3755380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755716_3766867_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767110_3767905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767986_3768358_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768255_3768474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768500_3768761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768875_3769265_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769278_3769572_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769568_3770414_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770537_3770813_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770809_3771067_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771108_3772299_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772415_3772784_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772780_3773332_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773338_3773920_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773900_3774269_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774246_3774639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774635_3777266_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777501_3777966_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778332_3780099_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780099_3780744_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780742_3781177_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781265_3784505_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784696_3786037_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786078_3787254_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787307_3787412_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787490_3788132_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788132_3788381_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788385_3789813_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789920_3790574_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790612_3792118_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792122_3793013_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793021_3794632_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794576_3794822_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794864_3796126_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
