The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023621	Mycobacterium tuberculosis strain LN2900 chromosome, complete genome	4411327	2940987	2976353	4411327	protease,integrase,tRNA,head,transposase,capsid,terminase	Tupanvirus(11.11%)	41	2969788:2969815	2980770:2980797
WP_003413486.1|2940987_2943066_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943174_2943402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943398_2944784_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945128_2945629_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945645_2946086_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946232_2946910_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946894_2947248_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947260_2947686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947682_2948357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948434_2949256_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949391_2950285_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950287_2951106_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951120_2952302_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952360_2952792_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953305_2954547_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954856_2955219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955565_2956690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956691_2957231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957370_2958669_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958707_2958989_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959133_2959619_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959645_2959903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959903_2962240_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962268_2962511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962511_2963189_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963384_2964041_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964203_2964650_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964824_2965157_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965276_2965636_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965737_2966196_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966331_2966712_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966708_2968205_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968394_2968631_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968703_2968877_+	hypothetical protein	NA	NA	NA	NA	NA
2969788:2969815	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969921_2970353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970349_2971348_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971361_2971826_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971958_2973219_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973593_2975033_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975040_2975574_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975726_2976353_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980770:2980797	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023621	Mycobacterium tuberculosis strain LN2900 chromosome, complete genome	4411327	3710220	3796149	4411327	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710220_3711481_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711536_3711698_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711719_3713249_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713181_3714120_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714128_3715496_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715564_3716782_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716877_3718386_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718382_3719534_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719724_3720570_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721044_3721485_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721518_3722388_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722408_3723419_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723703_3724336_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724402_3725632_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725914_3727264_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727275_3728415_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728411_3729143_+	methyltransferase	NA	NA	NA	NA	NA
WP_096863751.1|3729151_3736723_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742985_3743243_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743498_3752972_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753597_3754044_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754080_3754821_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755115_3755403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755739_3766890_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767133_3767928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768009_3768381_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768278_3768497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768523_3768784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768898_3769288_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769301_3769595_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769591_3770437_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770560_3770836_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770832_3771090_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771131_3772322_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772438_3772807_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772803_3773355_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773361_3773943_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773923_3774292_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774269_3774662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774658_3777289_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777524_3777989_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778355_3780122_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780122_3780767_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780765_3781200_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781288_3784528_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784719_3786060_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786101_3787277_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787330_3787435_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787513_3788155_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788155_3788404_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788408_3789836_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789943_3790597_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790635_3792141_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792145_3793036_-	diterpene synthase	NA	NA	NA	NA	NA
WP_096879775.1|3793044_3794655_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794599_3794845_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794887_3796149_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
