The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	4411299	2940974	2976342	4411299	tRNA,capsid,integrase,terminase,head,transposase,protease	Tupanvirus(11.11%)	41	2969777:2969804	2980759:2980786
WP_003413486.1|2940974_2943053_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943161_2943389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943385_2944771_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945115_2945616_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945632_2946073_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946219_2946897_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946881_2947235_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947247_2947673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947669_2948344_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948421_2949243_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949378_2950272_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950274_2951093_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951107_2952289_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952347_2952779_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899403.1|2954845_2955208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955554_2956679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956680_2957220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957359_2958658_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958696_2958978_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959122_2959608_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959634_2959892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959892_2962229_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962257_2962500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962500_2963178_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963373_2964030_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964192_2964639_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964813_2965146_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965265_2965625_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965726_2966185_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966320_2966701_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966697_2968194_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968383_2968620_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968692_2968866_+	hypothetical protein	NA	NA	NA	NA	NA
2969777:2969804	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969910_2970342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970338_2971337_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971350_2971815_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971947_2973208_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935348.1|2973235_2973421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899411.1|2973582_2975022_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975029_2975563_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975715_2976342_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980759:2980786	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023620	Mycobacterium tuberculosis strain LN1856 chromosome, complete genome	4411299	3710208	3796137	4411299	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710208_3711469_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711524_3711686_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711707_3713237_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713169_3714108_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714116_3715484_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715552_3716770_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716865_3718374_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718370_3719522_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719712_3720558_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721032_3721473_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721506_3722376_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722396_3723407_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723691_3724324_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724390_3725620_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725902_3727252_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727263_3728403_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728399_3729131_+	methyltransferase	NA	NA	NA	NA	NA
WP_096863751.1|3729139_3736711_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742973_3743231_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743486_3752960_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753585_3754032_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754068_3754809_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755103_3755391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755727_3766878_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767121_3767916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767997_3768369_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768266_3768485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768511_3768772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768886_3769276_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769289_3769583_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769579_3770425_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770548_3770824_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770820_3771078_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771119_3772310_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772426_3772795_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772791_3773343_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773349_3773931_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773911_3774280_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774257_3774650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774646_3777277_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777512_3777977_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778343_3780110_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780110_3780755_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780753_3781188_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781276_3784516_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784707_3786048_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786089_3787265_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787318_3787423_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787501_3788143_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788143_3788392_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788396_3789824_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789931_3790585_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790623_3792129_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792133_3793024_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793032_3794643_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794587_3794833_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794875_3796137_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
