assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	1	337673-338611	1,1	CRT,PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NNNNNNCCGCCGGCGCCGCCG,ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	21,43	2	6	338531-338557|338576-338593|338576-338593|338576-338593|338576-338593|338576-338593	NZ_CP023619.1_335775-335801|NZ_CP023619.1_673091-673108|NZ_CP023619.1_1216959-1216942|NZ_CP023619.1_2423631-2423648|NZ_CP023619.1_3738365-3738382|NZ_CP023619.1_3739712-3739729	NA:NA	15,2	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023619.1_333144_333327_-,NA	NA|398aa|up_9|NZ_CP023619.1_323322_324516_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023619.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023619.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023619.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023619.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023619.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023619.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023619.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023619.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023619.1_333144_333327_-	NA	NA|537aa|down_0|NZ_CP023619.1_339314_340925_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023619.1_340948_341857_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023619.1_342080_343976_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023619.1_343972_345589_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023619.1_345585_349578_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023619.1_349574_349883_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023619.1_349885_351427_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023619.1_351475_351769_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023619.1_351798_352089_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023619.1_352099_352987_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	2	366414-367112	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366702-366743|366777-366809	NZ_CP023619.1_374733-374774|NZ_CP023619.1_373548-373580	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023619.1_363426_363729_+,NA|161aa|down_1|NZ_CP023619.1_376522_377005_-,NA|410aa|down_5|NZ_CP023619.1_379121_380351_+	NA|262aa|up_9|NZ_CP023619.1_358121_358907_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023619.1_358895_359699_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023619.1_359708_361106_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023619.1_361284_363060_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023619.1_363202_363430_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023619.1_363426_363729_+	NA	NA|74aa|up_3|NZ_CP023619.1_363776_363998_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023619.1_363994_364420_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023619.1_364555_365188_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023619.1_365184_366093_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023619.1_375863_376535_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023619.1_376522_377005_-	NA	NA|239aa|down_2|NZ_CP023619.1_377062_377779_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023619.1_377880_378537_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023619.1_378606_379098_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023619.1_379121_380351_+	NA	NA|621aa|down_6|NZ_CP023619.1_380505_382368_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023619.1_382439_382826_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023619.1_382828_383491_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023619.1_383551_384436_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	3	691958-692034	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023619.1_677853_678261_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023619.1_678320_679007_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023619.1_679160_681794_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023619.1_681816_684204_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023619.1_684341_685064_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023619.1_685060_685858_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023619.1_685859_686747_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023619.1_686752_687967_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023619.1_688990_690436_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023619.1_690432_691869_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023619.1_693169_694720_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023619.1_694771_695164_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023619.1_695160_695418_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023619.1_695600_696836_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023619.1_697086_697500_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023619.1_697496_697733_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023619.1_697836_698343_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023619.1_698456_698927_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023619.1_698970_699732_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023619.1_699788_700100_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	4	926553-927500	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927336-927371|927336-927371|927336-927371	NZ_CP023619.1_675055-675020|NZ_CP023619.1_1213692-1213727|NZ_CP023619.1_2423738-2423703	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023619.1_931501_932053_-,NA|81aa|down_8|NZ_CP023619.1_937516_937759_+	NA|685aa|up_9|NZ_CP023619.1_914189_916244_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023619.1_916409_917579_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023619.1_917666_918683_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023619.1_918844_919486_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023619.1_919566_920622_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023619.1_920673_921066_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023619.1_921123_921546_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023619.1_921507_921798_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023619.1_921902_922808_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023619.1_922826_923642_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023619.1_927769_930409_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023619.1_930876_931521_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023619.1_931501_932053_-	NA	NA|218aa|down_3|NZ_CP023619.1_932202_932856_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023619.1_932926_933955_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023619.1_934643_935414_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023619.1_935500_936313_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023619.1_936380_937241_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023619.1_937516_937759_+	NA	NA|431aa|down_9|NZ_CP023619.1_938035_939328_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	5	1211893-1212749	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	69	1212276-1212297|1212321-1212336|1212459-1212480|1212459-1212480|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594|1212576-1212594	NZ_CP023619.1_2960495-2960474|NZ_CP023619.1_2088587-2088572|NZ_CP023619.1_837367-837388|NZ_CP023619.1_1217587-1217608|NZ_CP023619.1_674719-674701|NZ_CP023619.1_1213419-1213437|NZ_CP023619.1_1217560-1217578|NZ_CP023619.1_1217632-1217650|NZ_CP023619.1_1630650-1630632|NZ_CP023619.1_1633476-1633458|NZ_CP023619.1_1636871-1636853|NZ_CP023619.1_1990787-1990769|NZ_CP023619.1_2061515-2061497|NZ_CP023619.1_2061962-2061944|NZ_CP023619.1_2062061-2062043|NZ_CP023619.1_2802045-2802027|NZ_CP023619.1_2805573-2805555|NZ_CP023619.1_150165-150183|NZ_CP023619.1_333767-333749|NZ_CP023619.1_335186-335168|NZ_CP023619.1_335630-335612|NZ_CP023619.1_335681-335663|NZ_CP023619.1_335690-335672|NZ_CP023619.1_363004-362986|NZ_CP023619.1_443374-443356|NZ_CP023619.1_546718-546700|NZ_CP023619.1_623910-623928|NZ_CP023619.1_624132-624150|NZ_CP023619.1_673885-673867|NZ_CP023619.1_840150-840168|NZ_CP023619.1_1090915-1090933|NZ_CP023619.1_1091563-1091581|NZ_CP023619.1_1095622-1095604|NZ_CP023619.1_1212948-1212966|NZ_CP023619.1_1213338-1213356|NZ_CP023619.1_1217980-1217998|NZ_CP023619.1_1489157-1489139|NZ_CP023619.1_1618614-1618596|NZ_CP023619.1_1619067-1619049|NZ_CP023619.1_1635989-1635971|NZ_CP023619.1_1635998-1635980|NZ_CP023619.1_1864278-1864260|NZ_CP023619.1_1864806-1864788|NZ_CP023619.1_1990061-1990043|NZ_CP023619.1_2001423-2001441|NZ_CP023619.1_2088785-2088767|NZ_CP023619.1_2303464-2303446|NZ_CP023619.1_2356911-2356893|NZ_CP023619.1_2419564-2419582|NZ_CP023619.1_2423651-2423633|NZ_CP023619.1_2569143-2569125|NZ_CP023619.1_2693438-2693456|NZ_CP023619.1_2795360-2795342|NZ_CP023619.1_2795942-2795924|NZ_CP023619.1_3054532-3054550|NZ_CP023619.1_3054631-3054649|NZ_CP023619.1_3705451-3705469|NZ_CP023619.1_3737433-3737415|NZ_CP023619.1_3738057-3738039|NZ_CP023619.1_3738252-3738234|NZ_CP023619.1_3738385-3738367|NZ_CP023619.1_3802239-3802257|NZ_CP023619.1_3802422-3802440|NZ_CP023619.1_3802590-3802608|NZ_CP023619.1_3930403-3930421|NZ_CP023619.1_3932133-3932151|NZ_CP023619.1_3940640-3940658|NZ_CP023619.1_4031596-4031578|NZ_CP023619.1_4094122-4094140	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023619.1_1207325_1207592_+,NA|61aa|down_3|NZ_CP023619.1_1215167_1215350_+,NA|35aa|down_4|NZ_CP023619.1_1215459_1215564_+	NA|465aa|up_9|NZ_CP023619.1_1201659_1203054_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023619.1_1203255_1203978_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023619.1_1204009_1205176_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023619.1_1205246_1205741_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023619.1_1205926_1206361_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023619.1_1206462_1207329_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023619.1_1207325_1207592_+	NA	NA|674aa|up_2|NZ_CP023619.1_1207578_1209600_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023619.1_1209698_1210427_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023619.1_1210537_1211326_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023619.1_1213982_1214303_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023619.1_1214455_1214890_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023619.1_1214988_1215156_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023619.1_1215167_1215350_+	NA	NA|35aa|down_4|NZ_CP023619.1_1215459_1215564_+	NA	NA|152aa|down_5|NZ_CP023619.1_1215541_1215997_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023619.1_1216411_1218973_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023619.1_1219190_1220129_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023619.1_1220516_1221797_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023619.1_1221901_1222729_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	6	1572132-1573204	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023619.1_1563895_1564213_+,NA	NA|103aa|up_9|NZ_CP023619.1_1561410_1561719_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023619.1_1561715_1563335_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023619.1_1563895_1564213_+	NA	NA|209aa|up_6|NZ_CP023619.1_1564347_1564974_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023619.1_1565039_1565372_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023619.1_1565387_1566644_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023619.1_1566771_1567983_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023619.1_1568055_1569534_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023619.1_1569530_1570916_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023619.1_1570993_1572028_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023619.1_1574057_1574459_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023619.1_1574455_1574713_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023619.1_1574795_1575755_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023619.1_1575779_1576742_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023619.1_1576875_1577478_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023619.1_1577558_1579526_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023619.1_1579543_1580368_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023619.1_1580536_1581019_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023619.1_1581090_1581915_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023619.1_1582111_1583050_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	7	2088257-2088511	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088338-2088355|2088338-2088355|2088428-2088445	NZ_CP023619.1_401029-401012|NZ_CP023619.1_607365-607348|NZ_CP023619.1_3450146-3450129	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023619.1_2087616_2087880_-,NA	NA|165aa|up_9|NZ_CP023619.1_2073910_2074405_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023619.1_2074808_2075486_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023619.1_2075844_2078670_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023619.1_2078896_2079757_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023619.1_2079797_2080664_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023619.1_2080668_2082555_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023619.1_2082570_2084604_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023619.1_2084723_2086949_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023619.1_2087224_2087620_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023619.1_2087616_2087880_-	NA	NA|346aa|down_0|NZ_CP023619.1_2089648_2090686_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023619.1_2090685_2092053_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023619.1_2092226_2093663_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023619.1_2093698_2095150_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023619.1_2095179_2096130_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023619.1_2096144_2096561_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023619.1_2096838_2097261_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023619.1_2097309_2097612_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023619.1_2097608_2097923_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023619.1_2097922_2099656_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	8	2163350-2163454	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023619.1_2152397_2152868_-,NA|136aa|up_1|NZ_CP023619.1_2159893_2160301_-,NA|127aa|down_6|NZ_CP023619.1_2176523_2176904_-	NA|157aa|up_9|NZ_CP023619.1_2152397_2152868_-	NA	NA|216aa|up_8|NZ_CP023619.1_2153207_2153855_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023619.1_2153861_2156084_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023619.1_2156121_2156565_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023619.1_2156678_2157272_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023619.1_2157354_2157960_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023619.1_2158059_2159064_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023619.1_2159163_2159916_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023619.1_2159893_2160301_-	NA	NA|767aa|up_0|NZ_CP023619.1_2160435_2162736_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023619.1_2167622_2170586_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023619.1_2171034_2171499_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023619.1_2171596_2172460_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023619.1_2172497_2173769_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023619.1_2174040_2175156_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023619.1_2175146_2176487_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023619.1_2176523_2176904_-	NA	NA|621aa|down_7|NZ_CP023619.1_2177060_2178923_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023619.1_2178930_2179410_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023619.1_2179646_2180420_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	9	2168788-2169007	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023619.1_2159893_2160301_-,NA|127aa|down_5|NZ_CP023619.1_2176523_2176904_-	NA|216aa|up_9|NZ_CP023619.1_2153207_2153855_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023619.1_2153861_2156084_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023619.1_2156121_2156565_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023619.1_2156678_2157272_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023619.1_2157354_2157960_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023619.1_2158059_2159064_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023619.1_2159163_2159916_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023619.1_2159893_2160301_-	NA	NA|767aa|up_1|NZ_CP023619.1_2160435_2162736_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023619.1_2162905_2167285_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023619.1_2171034_2171499_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023619.1_2171596_2172460_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023619.1_2172497_2173769_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023619.1_2174040_2175156_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023619.1_2175146_2176487_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023619.1_2176523_2176904_-	NA	NA|621aa|down_6|NZ_CP023619.1_2177060_2178923_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023619.1_2178930_2179410_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023619.1_2179646_2180420_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023619.1_2181213_2181858_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	10	3119123-3120477	2,7,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023619.1_3112402_3112657_-,NA|135aa|up_7|NZ_CP023619.1_3112804_3113209_+,NA|64aa|up_6|NZ_CP023619.1_3113205_3113397_+,NA|86aa|up_4|NZ_CP023619.1_3114983_3115241_+,NA|104aa|up_3|NZ_CP023619.1_3115345_3115657_+,NA|203aa|up_2|NZ_CP023619.1_3116076_3116685_+,NA	NA|92aa|up_9|NZ_CP023619.1_3111951_3112227_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023619.1_3112402_3112657_-	NA	NA|135aa|up_7|NZ_CP023619.1_3112804_3113209_+	NA	NA|64aa|up_6|NZ_CP023619.1_3113205_3113397_+	NA	NA|385aa|up_5|NZ_CP023619.1_3113595_3114750_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023619.1_3114983_3115241_+	NA	NA|104aa|up_3|NZ_CP023619.1_3115345_3115657_+	NA	NA|203aa|up_2|NZ_CP023619.1_3116076_3116685_+	NA	NA|470aa|up_1|NZ_CP023619.1_3116755_3118165_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023619.1_3118161_3118974_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023619.1_3120503_3121765_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023619.1_3123562_3123904_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023619.1_3123904_3124921_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023619.1_3124933_3126082_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023619.1_3126177_3127305_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023619.1_3127301_3128210_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023619.1_3128190_3128901_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023619.1_3128910_3129285_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023619.1_3129281_3131720_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023619.1_3131716_3132439_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	11	3121800-3123514	8,5,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023619.1_3112402_3112657_-,NA|135aa|up_8|NZ_CP023619.1_3112804_3113209_+,NA|64aa|up_7|NZ_CP023619.1_3113205_3113397_+,NA|86aa|up_5|NZ_CP023619.1_3114983_3115241_+,NA|104aa|up_4|NZ_CP023619.1_3115345_3115657_+,NA|203aa|up_3|NZ_CP023619.1_3116076_3116685_+,NA	NA|85aa|up_9|NZ_CP023619.1_3112402_3112657_-	NA	NA|135aa|up_8|NZ_CP023619.1_3112804_3113209_+	NA	NA|64aa|up_7|NZ_CP023619.1_3113205_3113397_+	NA	NA|385aa|up_6|NZ_CP023619.1_3113595_3114750_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023619.1_3114983_3115241_+	NA	NA|104aa|up_4|NZ_CP023619.1_3115345_3115657_+	NA	NA|203aa|up_3|NZ_CP023619.1_3116076_3116685_+	NA	NA|470aa|up_2|NZ_CP023619.1_3116755_3118165_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023619.1_3118161_3118974_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023619.1_3120503_3121765_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023619.1_3123562_3123904_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023619.1_3123904_3124921_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023619.1_3124933_3126082_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023619.1_3126177_3127305_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023619.1_3127301_3128210_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023619.1_3128190_3128901_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023619.1_3128910_3129285_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023619.1_3129281_3131720_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023619.1_3131716_3132439_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023619.1_3132838_3133384_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	12	3740579-3741120	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023619.1_3755212_3755500_-,NA|87aa|down_9|NZ_CP023619.1_3768620_3768881_-	NA|282aa|up_9|NZ_CP023619.1_3719878_3720724_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023619.1_3721198_3721639_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023619.1_3721672_3722542_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023619.1_3722562_3723573_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023619.1_3723857_3724490_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023619.1_3724556_3725786_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023619.1_3726068_3727418_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023619.1_3727429_3728569_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023619.1_3728565_3729297_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023619.1_3729305_3736877_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023619.1_3743082_3743340_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023619.1_3743595_3753069_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023619.1_3753694_3754141_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023619.1_3754177_3754918_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023619.1_3755212_3755500_-	NA	NA|3717aa|down_5|NZ_CP023619.1_3755836_3766987_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023619.1_3767230_3768025_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023619.1_3768106_3768478_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023619.1_3768375_3768594_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023619.1_3768620_3768881_-	NA
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	13	3948226-3949977	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948817-3948852|3948817-3948852|3948817-3948852|3948817-3948852|3948817-3948852|3949708-3949734|3949708-3949734|3949708-3949734|3949708-3949734	NZ_CP023619.1_3946933-3946968|NZ_CP023619.1_3947866-3947901|NZ_CP023619.1_3947275-3947310|NZ_CP023619.1_3948217-3948252|NZ_CP023619.1_3932688-3932723|NZ_CP023619.1_361944-361970|NZ_CP023619.1_3941141-3941167|NZ_CP023619.1_3941477-3941503|NZ_CP023619.1_3941822-3941848	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023619.1_3953292_3954132_+	NA|64aa|up_9|NZ_CP023619.1_3921948_3922140_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NZ_CP023619.1_3922354_3923557_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NZ_CP023619.1_3923581_3924703_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NZ_CP023619.1_3924773_3926282_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_5|NZ_CP023619.1_3926452_3930598_+	pfam00934, PE, PE family	NA|1902aa|up_4|NZ_CP023619.1_3930888_3936594_+	pfam00934, PE, PE family	NA|516aa|up_3|NZ_CP023619.1_3936760_3938308_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NZ_CP023619.1_3938304_3939141_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1772aa|up_1|NZ_CP023619.1_3939500_3944816_+	pfam00934, PE, PE family	NA|219aa|up_0|NZ_CP023619.1_3944944_3945601_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023619.1_3950685_3952332_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023619.1_3952405_3953197_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023619.1_3953292_3954132_+	NA	NA|399aa|down_3|NZ_CP023619.1_3954186_3955383_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023619.1_3955411_3956122_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023619.1_3956186_3957230_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023619.1_3957382_3958294_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023619.1_3958309_3959374_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023619.1_3960616_3961648_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023619.1_3961661_3962186_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002447795.1_ASM244779v1	NZ_CP023619	Mycobacterium tuberculosis strain LN1100 chromosome, complete genome	14	4110539-4110627	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023619.1_4101125_4101896_-,NA|119aa|up_3|NZ_CP023619.1_4107030_4107387_+,NA|52aa|up_2|NZ_CP023619.1_4107486_4107642_+,NA|233aa|up_0|NZ_CP023619.1_4109643_4110342_-,NA|126aa|down_6|NZ_CP023619.1_4115862_4116240_+	NA|288aa|up_9|NZ_CP023619.1_4099507_4100371_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023619.1_4101125_4101896_-	NA	NA|549aa|up_7|NZ_CP023619.1_4101892_4103539_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023619.1_4103535_4104399_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023619.1_4104391_4105318_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023619.1_4105319_4106945_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023619.1_4107030_4107387_+	NA	NA|52aa|up_2|NZ_CP023619.1_4107486_4107642_+	NA	NA|652aa|up_1|NZ_CP023619.1_4107652_4109608_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023619.1_4109643_4110342_-	NA	NA|173aa|down_0|NZ_CP023619.1_4110687_4111206_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023619.1_4111206_4112190_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023619.1_4112182_4113376_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023619.1_4113381_4114203_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023619.1_4114334_4115018_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023619.1_4115017_4115755_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023619.1_4115862_4116240_+	NA	NA|225aa|down_7|NZ_CP023619.1_4116338_4117013_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023619.1_4117116_4117911_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023619.1_4117917_4118373_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
