assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	1	333618-334416	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023618.1_333133_333316_-,NA	NA|398aa|up_9|NZ_CP023618.1_323311_324505_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023618.1_324540_326223_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023618.1_326239_328435_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023618.1_328548_329682_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023618.1_329678_330299_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023618.1_330395_330977_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023618.1_330906_331632_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023618.1_331721_332642_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023618.1_332681_333110_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023618.1_333133_333316_-	NA	NA|537aa|down_0|NZ_CP023618.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023618.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023618.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023618.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023618.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023618.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023618.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023618.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023618.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023618.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	2	338078-338300	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023618.1_333133_333316_-,NA	NA|561aa|up_9|NZ_CP023618.1_324540_326223_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023618.1_326239_328435_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023618.1_328548_329682_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023618.1_329678_330299_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023618.1_330395_330977_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023618.1_330906_331632_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023618.1_331721_332642_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023618.1_332681_333110_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023618.1_333133_333316_-	NA	NA|958aa|up_0|NZ_CP023618.1_333410_336284_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP023618.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023618.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023618.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023618.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023618.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023618.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023618.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023618.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023618.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023618.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	3	366430-367128	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366718-366759|366793-366825	NZ_CP023618.1_374749-374790|NZ_CP023618.1_373564-373596	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023618.1_363442_363745_+,NA|161aa|down_1|NZ_CP023618.1_376538_377021_-,NA|410aa|down_5|NZ_CP023618.1_379137_380367_+	NA|262aa|up_9|NZ_CP023618.1_358137_358923_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023618.1_358911_359715_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023618.1_359724_361122_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023618.1_361300_363076_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023618.1_363218_363446_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023618.1_363442_363745_+	NA	NA|74aa|up_3|NZ_CP023618.1_363792_364014_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023618.1_364010_364436_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023618.1_364571_365204_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023618.1_365200_366109_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023618.1_375879_376551_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023618.1_376538_377021_-	NA	NA|239aa|down_2|NZ_CP023618.1_377078_377795_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023618.1_377896_378553_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023618.1_378622_379114_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023618.1_379137_380367_+	NA	NA|621aa|down_6|NZ_CP023618.1_380521_382384_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023618.1_382455_382842_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023618.1_382844_383507_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023618.1_383567_384452_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	4	631219-631356	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631237-631254|631237-631254|631321-631338	NZ_CP023618.1_22466-22483|NZ_CP023618.1_1412012-1412029|NZ_CP023618.1_973184-973201	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023618.1_622057_622219_-,NA|478aa|up_0|NZ_CP023618.1_628234_629668_-,NA|450aa|down_2|NZ_CP023618.1_632991_634341_-,NA|93aa|down_5|NZ_CP023618.1_635871_636150_-	NA|325aa|up_9|NZ_CP023618.1_619827_620802_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023618.1_620843_622061_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023618.1_622057_622219_-	NA	NA|106aa|up_6|NZ_CP023618.1_622265_622583_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023618.1_622729_624514_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023618.1_624409_625417_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023618.1_625498_626377_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023618.1_626393_627188_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023618.1_627184_628225_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023618.1_628234_629668_-	NA	NA|211aa|down_0|NZ_CP023618.1_631679_632312_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023618.1_632308_632971_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023618.1_632991_634341_-	NA	NA|381aa|down_3|NZ_CP023618.1_634352_635495_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023618.1_635509_635812_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023618.1_635871_636150_-	NA	NA|418aa|down_6|NZ_CP023618.1_636146_637400_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023618.1_637519_637906_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023618.1_637968_638853_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023618.1_638948_639851_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	5	691968-692044	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023618.1_677863_678271_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023618.1_678330_679017_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023618.1_679170_681804_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023618.1_681826_684214_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023618.1_684351_685074_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023618.1_685070_685868_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023618.1_685869_686757_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023618.1_686762_687977_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023618.1_689000_690446_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023618.1_690442_691879_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023618.1_693179_694730_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023618.1_694781_695174_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023618.1_695170_695428_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023618.1_695610_696846_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023618.1_697096_697510_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023618.1_697506_697743_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023618.1_697846_698353_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023618.1_698466_698937_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023618.1_698980_699742_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023618.1_699798_700110_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	6	926564-927511	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927347-927382|927347-927382|927347-927382	NZ_CP023618.1_675065-675030|NZ_CP023618.1_1213691-1213726|NZ_CP023618.1_2423728-2423693	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023618.1_931512_932064_-,NA|81aa|down_8|NZ_CP023618.1_937527_937770_+	NA|685aa|up_9|NZ_CP023618.1_914200_916255_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023618.1_916420_917590_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023618.1_917677_918694_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023618.1_918855_919497_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023618.1_919577_920633_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023618.1_920684_921077_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023618.1_921134_921557_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023618.1_921518_921809_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023618.1_921913_922819_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023618.1_922837_923653_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023618.1_927780_930420_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023618.1_930887_931532_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023618.1_931512_932064_-	NA	NA|218aa|down_3|NZ_CP023618.1_932213_932867_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023618.1_932937_933966_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023618.1_934654_935425_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023618.1_935511_936324_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023618.1_936391_937252_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023618.1_937527_937770_+	NA	NA|431aa|down_9|NZ_CP023618.1_938046_939339_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	7	964516-964767	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	964689-964744	NZ_CP023618.1_964817-964872	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP023618.1_962614_962815_+,NA	NA|158aa|up_9|NZ_CP023618.1_953191_953665_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NZ_CP023618.1_953661_954855_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NZ_CP023618.1_955011_956223_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NZ_CP023618.1_956227_958390_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|543aa|up_5|NZ_CP023618.1_958457_960086_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NZ_CP023618.1_960276_962547_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NZ_CP023618.1_962614_962815_+	NA	NA|168aa|up_2|NZ_CP023618.1_962824_963328_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NZ_CP023618.1_963324_963807_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NZ_CP023618.1_963803_964229_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NZ_CP023618.1_965917_966196_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NZ_CP023618.1_966199_967282_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NZ_CP023618.1_967278_967668_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NZ_CP023618.1_967832_968240_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|610aa|down_4|NZ_CP023618.1_968358_970188_-	pfam00934, PE, PE family	NA|651aa|down_5|NZ_CP023618.1_970448_972401_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NZ_CP023618.1_972489_973650_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NZ_CP023618.1_973749_974238_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NZ_CP023618.1_974234_975881_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NZ_CP023618.1_976018_976807_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	8	1191267-1191375	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023618.1_1180634_1182266_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023618.1_1182341_1183406_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023618.1_1183458_1183932_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023618.1_1183965_1184829_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023618.1_1184833_1185691_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023618.1_1185691_1186774_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023618.1_1186854_1187274_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023618.1_1187385_1187952_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023618.1_1187948_1188344_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023618.1_1188371_1190375_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023618.1_1192460_1194224_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023618.1_1194220_1194994_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023618.1_1195005_1196043_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023618.1_1196229_1197066_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023618.1_1197181_1198033_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023618.1_1198106_1199324_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023618.1_1199376_1200321_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023618.1_1200543_1201611_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023618.1_1201667_1203062_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023618.1_1203263_1203986_+	pfam06271, RDD, RDD family
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	9	1211901-1212757	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	72	1212284-1212305|1212329-1212344|1212467-1212488|1212467-1212488|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602|1212584-1212602	NZ_CP023618.1_2960486-2960465|NZ_CP023618.1_2088577-2088562|NZ_CP023618.1_837377-837398|NZ_CP023618.1_1217586-1217607|NZ_CP023618.1_674729-674711|NZ_CP023618.1_840439-840457|NZ_CP023618.1_1213418-1213436|NZ_CP023618.1_1217559-1217577|NZ_CP023618.1_1217631-1217649|NZ_CP023618.1_1630649-1630631|NZ_CP023618.1_1633475-1633457|NZ_CP023618.1_1990786-1990768|NZ_CP023618.1_2061505-2061487|NZ_CP023618.1_2061952-2061934|NZ_CP023618.1_2062051-2062033|NZ_CP023618.1_2802035-2802017|NZ_CP023618.1_2805563-2805545|NZ_CP023618.1_150165-150183|NZ_CP023618.1_335175-335157|NZ_CP023618.1_335628-335610|NZ_CP023618.1_335679-335661|NZ_CP023618.1_335688-335670|NZ_CP023618.1_337977-337959|NZ_CP023618.1_338366-338348|NZ_CP023618.1_338395-338413|NZ_CP023618.1_338489-338471|NZ_CP023618.1_363020-363002|NZ_CP023618.1_443383-443365|NZ_CP023618.1_546727-546709|NZ_CP023618.1_623920-623938|NZ_CP023618.1_624142-624160|NZ_CP023618.1_673895-673877|NZ_CP023618.1_840160-840178|NZ_CP023618.1_1090929-1090947|NZ_CP023618.1_1091577-1091595|NZ_CP023618.1_1095636-1095618|NZ_CP023618.1_1212956-1212974|NZ_CP023618.1_1213337-1213355|NZ_CP023618.1_1217979-1217997|NZ_CP023618.1_1489156-1489138|NZ_CP023618.1_1618613-1618595|NZ_CP023618.1_1619066-1619048|NZ_CP023618.1_1635988-1635970|NZ_CP023618.1_1635997-1635979|NZ_CP023618.1_1864277-1864259|NZ_CP023618.1_1864805-1864787|NZ_CP023618.1_1990060-1990042|NZ_CP023618.1_2001422-2001440|NZ_CP023618.1_2088775-2088757|NZ_CP023618.1_2303454-2303436|NZ_CP023618.1_2356901-2356883|NZ_CP023618.1_2419554-2419572|NZ_CP023618.1_2423641-2423623|NZ_CP023618.1_2569133-2569115|NZ_CP023618.1_2693428-2693446|NZ_CP023618.1_2795350-2795332|NZ_CP023618.1_2795932-2795914|NZ_CP023618.1_3054523-3054541|NZ_CP023618.1_3054622-3054640|NZ_CP023618.1_3705442-3705460|NZ_CP023618.1_3737420-3737402|NZ_CP023618.1_3738044-3738026|NZ_CP023618.1_3738287-3738269|NZ_CP023618.1_3738420-3738402|NZ_CP023618.1_3802283-3802301|NZ_CP023618.1_3802466-3802484|NZ_CP023618.1_3802634-3802652|NZ_CP023618.1_3930437-3930455|NZ_CP023618.1_3932167-3932185|NZ_CP023618.1_3940674-3940692|NZ_CP023618.1_4031652-4031634|NZ_CP023618.1_4094178-4094196	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023618.1_1207333_1207600_+,NA|61aa|down_3|NZ_CP023618.1_1215166_1215349_+,NA|35aa|down_4|NZ_CP023618.1_1215458_1215563_+	NA|465aa|up_9|NZ_CP023618.1_1201667_1203062_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023618.1_1203263_1203986_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023618.1_1204017_1205184_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023618.1_1205254_1205749_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023618.1_1205934_1206369_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023618.1_1206470_1207337_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023618.1_1207333_1207600_+	NA	NA|674aa|up_2|NZ_CP023618.1_1207586_1209608_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023618.1_1209706_1210435_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023618.1_1210545_1211334_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023618.1_1213981_1214302_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023618.1_1214454_1214889_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023618.1_1214990_1215155_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023618.1_1215166_1215349_+	NA	NA|35aa|down_4|NZ_CP023618.1_1215458_1215563_+	NA	NA|152aa|down_5|NZ_CP023618.1_1215540_1215996_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023618.1_1216410_1218972_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023618.1_1219189_1220128_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023618.1_1220515_1221796_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023618.1_1221900_1222728_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	10	1572131-1573203	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023618.1_1563894_1564212_+,NA	NA|103aa|up_9|NZ_CP023618.1_1561409_1561718_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023618.1_1561714_1563334_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023618.1_1563894_1564212_+	NA	NA|209aa|up_6|NZ_CP023618.1_1564346_1564973_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023618.1_1565038_1565371_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023618.1_1565386_1566643_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023618.1_1566770_1567982_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023618.1_1568054_1569533_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023618.1_1569529_1570915_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023618.1_1570992_1572027_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023618.1_1574057_1574459_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023618.1_1574455_1574713_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023618.1_1574795_1575755_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023618.1_1575779_1576742_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023618.1_1576875_1577478_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023618.1_1577558_1579526_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023618.1_1579543_1580368_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023618.1_1580536_1581019_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023618.1_1581090_1581915_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023618.1_1582111_1583050_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	11	1636566-1637039	3,4	PILER-CR,CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG,NGCCGCCGGCNCCGCCGN	47,18	0	0	NA	NA	NA:NA	2,6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023618.1_1623074_1623188_-,NA|137aa|up_7|NZ_CP023618.1_1623237_1623648_-,NA|288aa|down_2|NZ_CP023618.1_1640630_1641494_+	NA|162aa|up_9|NZ_CP023618.1_1622157_1622643_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023618.1_1623074_1623188_-	NA	NA|137aa|up_7|NZ_CP023618.1_1623237_1623648_-	NA	NA|248aa|up_6|NZ_CP023618.1_1623664_1624408_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023618.1_1624404_1625316_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023618.1_1625368_1626913_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023618.1_1626909_1628031_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023618.1_1628047_1630150_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023618.1_1630588_1634578_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023618.1_1634979_1635906_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023618.1_1638331_1639597_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023618.1_1639624_1640611_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023618.1_1640630_1641494_+	NA	NA|311aa|down_3|NZ_CP023618.1_1641443_1642376_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023618.1_1642487_1643273_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023618.1_1643269_1644211_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023618.1_1644313_1646089_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023618.1_1646136_1646943_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023618.1_1646939_1649480_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023618.1_1649476_1650670_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	12	2088247-2088501	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088328-2088345|2088328-2088345|2088418-2088435	NZ_CP023618.1_401045-401028|NZ_CP023618.1_607375-607358|NZ_CP023618.1_3450137-3450120	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023618.1_2087606_2087870_-,NA	NA|165aa|up_9|NZ_CP023618.1_2073900_2074395_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023618.1_2074798_2075476_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023618.1_2075834_2078660_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023618.1_2078886_2079747_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023618.1_2079787_2080654_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023618.1_2080658_2082545_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023618.1_2082560_2084594_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023618.1_2084713_2086939_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023618.1_2087214_2087610_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023618.1_2087606_2087870_-	NA	NA|346aa|down_0|NZ_CP023618.1_2089638_2090676_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023618.1_2090675_2092043_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023618.1_2092216_2093653_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023618.1_2093688_2095140_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023618.1_2095169_2096120_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023618.1_2096134_2096551_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023618.1_2096828_2097251_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023618.1_2097299_2097602_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023618.1_2097598_2097913_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023618.1_2097912_2099646_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	13	2163340-2163444	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023618.1_2152387_2152858_-,NA|136aa|up_1|NZ_CP023618.1_2159883_2160291_-,NA|127aa|down_6|NZ_CP023618.1_2176513_2176894_-	NA|157aa|up_9|NZ_CP023618.1_2152387_2152858_-	NA	NA|216aa|up_8|NZ_CP023618.1_2153197_2153845_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023618.1_2153851_2156074_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023618.1_2156111_2156555_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023618.1_2156668_2157262_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023618.1_2157344_2157950_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023618.1_2158049_2159054_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023618.1_2159153_2159906_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023618.1_2159883_2160291_-	NA	NA|767aa|up_0|NZ_CP023618.1_2160425_2162726_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023618.1_2167612_2170576_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023618.1_2171024_2171489_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023618.1_2171586_2172450_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023618.1_2172487_2173759_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023618.1_2174030_2175146_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023618.1_2175136_2176477_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023618.1_2176513_2176894_-	NA	NA|621aa|down_7|NZ_CP023618.1_2177050_2178913_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023618.1_2178920_2179400_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023618.1_2179636_2180410_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	14	2168778-2168997	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023618.1_2159883_2160291_-,NA|127aa|down_5|NZ_CP023618.1_2176513_2176894_-	NA|216aa|up_9|NZ_CP023618.1_2153197_2153845_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023618.1_2153851_2156074_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023618.1_2156111_2156555_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023618.1_2156668_2157262_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023618.1_2157344_2157950_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023618.1_2158049_2159054_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023618.1_2159153_2159906_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023618.1_2159883_2160291_-	NA	NA|767aa|up_1|NZ_CP023618.1_2160425_2162726_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023618.1_2162895_2167275_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023618.1_2171024_2171489_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023618.1_2171586_2172450_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023618.1_2172487_2173759_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023618.1_2174030_2175146_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023618.1_2175136_2176477_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023618.1_2176513_2176894_-	NA	NA|621aa|down_6|NZ_CP023618.1_2177050_2178913_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023618.1_2178920_2179400_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023618.1_2179636_2180410_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023618.1_2181203_2181848_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	15	3119114-3120468	4,8,6	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-D,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-C,TypeIII-D,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023618.1_3112393_3112648_-,NA|135aa|up_7|NZ_CP023618.1_3112795_3113200_+,NA|64aa|up_6|NZ_CP023618.1_3113196_3113388_+,NA|86aa|up_4|NZ_CP023618.1_3114974_3115232_+,NA|104aa|up_3|NZ_CP023618.1_3115336_3115648_+,NA|203aa|up_2|NZ_CP023618.1_3116067_3116676_+,NA	NA|92aa|up_9|NZ_CP023618.1_3111942_3112218_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023618.1_3112393_3112648_-	NA	NA|135aa|up_7|NZ_CP023618.1_3112795_3113200_+	NA	NA|64aa|up_6|NZ_CP023618.1_3113196_3113388_+	NA	NA|385aa|up_5|NZ_CP023618.1_3113586_3114741_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023618.1_3114974_3115232_+	NA	NA|104aa|up_3|NZ_CP023618.1_3115336_3115648_+	NA	NA|203aa|up_2|NZ_CP023618.1_3116067_3116676_+	NA	NA|470aa|up_1|NZ_CP023618.1_3116746_3118156_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023618.1_3118152_3118965_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023618.1_3120494_3121756_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023618.1_3123553_3123895_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023618.1_3123895_3124912_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023618.1_3124924_3126073_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023618.1_3126168_3127296_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023618.1_3127292_3128201_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023618.1_3128181_3128892_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023618.1_3128901_3129276_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023618.1_3129272_3131711_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023618.1_3131707_3132430_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	16	3121791-3123505	9,7,5,6	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-D,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	23,23,20,20	23	TypeIII-C,TypeIII-D,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023618.1_3112393_3112648_-,NA|135aa|up_8|NZ_CP023618.1_3112795_3113200_+,NA|64aa|up_7|NZ_CP023618.1_3113196_3113388_+,NA|86aa|up_5|NZ_CP023618.1_3114974_3115232_+,NA|104aa|up_4|NZ_CP023618.1_3115336_3115648_+,NA|203aa|up_3|NZ_CP023618.1_3116067_3116676_+,NA	NA|85aa|up_9|NZ_CP023618.1_3112393_3112648_-	NA	NA|135aa|up_8|NZ_CP023618.1_3112795_3113200_+	NA	NA|64aa|up_7|NZ_CP023618.1_3113196_3113388_+	NA	NA|385aa|up_6|NZ_CP023618.1_3113586_3114741_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023618.1_3114974_3115232_+	NA	NA|104aa|up_4|NZ_CP023618.1_3115336_3115648_+	NA	NA|203aa|up_3|NZ_CP023618.1_3116067_3116676_+	NA	NA|470aa|up_2|NZ_CP023618.1_3116746_3118156_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023618.1_3118152_3118965_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023618.1_3120494_3121756_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023618.1_3123553_3123895_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023618.1_3123895_3124912_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023618.1_3124924_3126073_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023618.1_3126168_3127296_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023618.1_3127292_3128201_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023618.1_3128181_3128892_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023618.1_3128901_3129276_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023618.1_3129272_3131711_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023618.1_3131707_3132430_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023618.1_3132829_3133375_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	17	3740614-3741155	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023618.1_3755256_3755544_-,NA|87aa|down_9|NZ_CP023618.1_3768664_3768925_-	NA|282aa|up_9|NZ_CP023618.1_3719865_3720711_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023618.1_3721185_3721626_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023618.1_3721659_3722529_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023618.1_3722549_3723560_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023618.1_3723844_3724477_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023618.1_3724543_3725773_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023618.1_3726055_3727405_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023618.1_3727416_3728556_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023618.1_3728552_3729284_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023618.1_3729292_3736864_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023618.1_3743126_3743384_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023618.1_3743639_3753113_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023618.1_3753738_3754185_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023618.1_3754221_3754962_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023618.1_3755256_3755544_-	NA	NA|3717aa|down_5|NZ_CP023618.1_3755880_3767031_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023618.1_3767274_3768069_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023618.1_3768150_3768522_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023618.1_3768419_3768638_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023618.1_3768664_3768925_-	NA
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	18	3948291-3950042	9	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948882-3948917|3948882-3948917|3948882-3948917|3948882-3948917|3948882-3948917|3949773-3949799|3949773-3949799|3949773-3949799|3949773-3949799	NZ_CP023618.1_3946998-3947033|NZ_CP023618.1_3947340-3947375|NZ_CP023618.1_3947931-3947966|NZ_CP023618.1_3948282-3948317|NZ_CP023618.1_3932722-3932757|NZ_CP023618.1_361960-361986|NZ_CP023618.1_3941175-3941201|NZ_CP023618.1_3941511-3941537|NZ_CP023618.1_3941866-3941892	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023618.1_3953357_3954197_+	NA|255aa|up_9|NZ_CP023618.1_3920023_3920788_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NZ_CP023618.1_3921013_3921967_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NZ_CP023618.1_3921991_3922183_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NZ_CP023618.1_3922397_3923600_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|503aa|up_5|NZ_CP023618.1_3924816_3926325_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1379aa|up_4|NZ_CP023618.1_3926495_3930632_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023618.1_3930922_3936628_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023618.1_3936794_3938342_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023618.1_3938338_3939175_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023618.1_3945018_3945675_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023618.1_3950750_3952397_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023618.1_3952470_3953262_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023618.1_3953357_3954197_+	NA	NA|399aa|down_3|NZ_CP023618.1_3954251_3955448_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023618.1_3955476_3956187_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023618.1_3956251_3957295_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023618.1_3957447_3958359_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023618.1_3958374_3959439_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023618.1_3960681_3961713_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023618.1_3961726_3962251_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002447775.1_ASM244777v1	NZ_CP023618	Mycobacterium tuberculosis strain LN3695 chromosome, complete genome	19	4110595-4110683	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023618.1_4101181_4101952_-,NA|119aa|up_3|NZ_CP023618.1_4107086_4107443_+,NA|52aa|up_2|NZ_CP023618.1_4107542_4107698_+,NA|233aa|up_0|NZ_CP023618.1_4109699_4110398_-,NA|126aa|down_6|NZ_CP023618.1_4115918_4116296_+	NA|288aa|up_9|NZ_CP023618.1_4099563_4100427_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023618.1_4101181_4101952_-	NA	NA|549aa|up_7|NZ_CP023618.1_4101948_4103595_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023618.1_4103591_4104455_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023618.1_4104447_4105374_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023618.1_4105375_4107001_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023618.1_4107086_4107443_+	NA	NA|52aa|up_2|NZ_CP023618.1_4107542_4107698_+	NA	NA|652aa|up_1|NZ_CP023618.1_4107708_4109664_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023618.1_4109699_4110398_-	NA	NA|173aa|down_0|NZ_CP023618.1_4110743_4111262_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023618.1_4111262_4112246_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023618.1_4112238_4113432_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023618.1_4113437_4114259_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023618.1_4114390_4115074_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023618.1_4115073_4115811_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023618.1_4115918_4116296_+	NA	NA|225aa|down_7|NZ_CP023618.1_4116394_4117069_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023618.1_4117172_4117967_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023618.1_4117973_4118429_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
