assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	1	334503-334690	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGTTGCCGAACAACCACCCGCCGGCCCCGCCGGCAGCCCCGGT	44	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023617.1_333162_333345_-,NA	NA|398aa|up_9|NZ_CP023617.1_323340_324534_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023617.1_324569_326252_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023617.1_326268_328464_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023617.1_328577_329711_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023617.1_329707_330328_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023617.1_330424_331006_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023617.1_330935_331661_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023617.1_331750_332671_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023617.1_332710_333139_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023617.1_333162_333345_-	NA	NA|838aa|down_0|NZ_CP023617.1_336562_339076_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023617.1_339366_340977_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023617.1_341000_341909_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023617.1_342132_344028_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023617.1_344024_345641_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023617.1_345637_349630_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023617.1_349626_349935_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023617.1_349937_351479_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023617.1_351527_351821_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023617.1_351850_352141_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	2	335388-335960	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	3	3	335808-335831|335853-335885|335907-335939	NZ_CP023617.1_338589-338612|NZ_CP023617.1_338616-338648|NZ_CP023617.1_338670-338702	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023617.1_333162_333345_-,NA	NA|398aa|up_9|NZ_CP023617.1_323340_324534_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023617.1_324569_326252_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023617.1_326268_328464_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023617.1_328577_329711_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023617.1_329707_330328_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023617.1_330424_331006_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023617.1_330935_331661_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023617.1_331750_332671_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023617.1_332710_333139_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023617.1_333162_333345_-	NA	NA|838aa|down_0|NZ_CP023617.1_336562_339076_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023617.1_339366_340977_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023617.1_341000_341909_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023617.1_342132_344028_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023617.1_344024_345641_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023617.1_345637_349630_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023617.1_349626_349935_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023617.1_349937_351479_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023617.1_351527_351821_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023617.1_351850_352141_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	3	366466-367164	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366754-366795|366829-366861	NZ_CP023617.1_374785-374826|NZ_CP023617.1_373600-373632	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023617.1_363478_363781_+,NA|161aa|down_1|NZ_CP023617.1_376574_377057_-,NA|410aa|down_5|NZ_CP023617.1_379173_380403_+	NA|262aa|up_9|NZ_CP023617.1_358173_358959_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023617.1_358947_359751_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023617.1_359760_361158_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023617.1_361336_363112_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023617.1_363254_363482_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023617.1_363478_363781_+	NA	NA|74aa|up_3|NZ_CP023617.1_363828_364050_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023617.1_364046_364472_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023617.1_364607_365240_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023617.1_365236_366145_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023617.1_375915_376587_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023617.1_376574_377057_-	NA	NA|239aa|down_2|NZ_CP023617.1_377114_377831_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023617.1_377932_378589_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023617.1_378658_379150_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023617.1_379173_380403_+	NA	NA|621aa|down_6|NZ_CP023617.1_380557_382420_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023617.1_382491_382878_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023617.1_382880_383543_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023617.1_383603_384488_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	4	631248-631385	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631266-631283|631266-631283|631350-631367	NZ_CP023617.1_22466-22483|NZ_CP023617.1_1412032-1412049|NZ_CP023617.1_973204-973221	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023617.1_622086_622248_-,NA|478aa|up_0|NZ_CP023617.1_628263_629697_-,NA|450aa|down_2|NZ_CP023617.1_633020_634370_-,NA|93aa|down_5|NZ_CP023617.1_635900_636179_-	NA|325aa|up_9|NZ_CP023617.1_619856_620831_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023617.1_620872_622090_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023617.1_622086_622248_-	NA	NA|106aa|up_6|NZ_CP023617.1_622294_622612_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023617.1_622758_624543_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023617.1_624438_625446_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023617.1_625527_626406_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023617.1_626422_627217_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023617.1_627213_628254_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023617.1_628263_629697_-	NA	NA|211aa|down_0|NZ_CP023617.1_631708_632341_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023617.1_632337_633000_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023617.1_633020_634370_-	NA	NA|381aa|down_3|NZ_CP023617.1_634381_635524_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023617.1_635538_635841_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023617.1_635900_636179_-	NA	NA|418aa|down_6|NZ_CP023617.1_636175_637429_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023617.1_637548_637935_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023617.1_637997_638882_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023617.1_638977_639880_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	5	691991-692067	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023617.1_677675_677891_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023617.1_677887_678295_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023617.1_678354_679041_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023617.1_679194_681828_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023617.1_681850_684238_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023617.1_684375_685098_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023617.1_685094_685892_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP023617.1_685893_686781_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023617.1_686786_688001_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023617.1_689024_690470_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023617.1_693202_694753_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023617.1_694804_695197_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023617.1_695193_695451_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023617.1_695633_696869_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023617.1_697119_697533_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023617.1_697529_697766_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023617.1_697869_698376_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023617.1_698489_698960_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023617.1_699003_699765_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023617.1_699821_700133_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	6	926584-927531	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927367-927402|927367-927402|927367-927402	NZ_CP023617.1_675094-675059|NZ_CP023617.1_1213718-1213753|NZ_CP023617.1_2423746-2423711	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023617.1_931532_932084_-,NA|81aa|down_8|NZ_CP023617.1_937547_937790_+	NA|685aa|up_9|NZ_CP023617.1_914220_916275_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023617.1_916440_917610_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023617.1_917697_918714_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023617.1_918875_919517_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023617.1_919597_920653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023617.1_920704_921097_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023617.1_921154_921577_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023617.1_921538_921829_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023617.1_921933_922839_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023617.1_922857_923673_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023617.1_927800_930440_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023617.1_930907_931552_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023617.1_931532_932084_-	NA	NA|218aa|down_3|NZ_CP023617.1_932233_932887_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023617.1_932957_933986_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023617.1_934674_935445_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023617.1_935531_936344_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023617.1_936411_937272_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023617.1_937547_937790_+	NA	NA|431aa|down_9|NZ_CP023617.1_938066_939359_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	7	1191285-1191393	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023617.1_1180652_1182284_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023617.1_1182359_1183424_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023617.1_1183476_1183950_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023617.1_1183983_1184847_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023617.1_1184851_1185709_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023617.1_1185709_1186792_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023617.1_1186872_1187292_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023617.1_1187403_1187970_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023617.1_1187966_1188362_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023617.1_1188389_1190393_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023617.1_1192478_1194242_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023617.1_1194238_1195012_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023617.1_1195023_1196061_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023617.1_1196247_1197084_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023617.1_1197199_1198051_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023617.1_1198124_1199342_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023617.1_1199394_1200339_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023617.1_1200561_1201629_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023617.1_1201685_1203080_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023617.1_1203281_1204004_+	pfam06271, RDD, RDD family
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	8	1211919-1212775	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	71	1212302-1212323|1212347-1212362|1212485-1212506|1212485-1212506|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620|1212602-1212620	NZ_CP023617.1_2960510-2960489|NZ_CP023617.1_2088571-2088556|NZ_CP023617.1_837397-837418|NZ_CP023617.1_1217613-1217634|NZ_CP023617.1_674758-674740|NZ_CP023617.1_840459-840477|NZ_CP023617.1_1213445-1213463|NZ_CP023617.1_1217586-1217604|NZ_CP023617.1_1217658-1217676|NZ_CP023617.1_1630664-1630646|NZ_CP023617.1_1633490-1633472|NZ_CP023617.1_1990776-1990758|NZ_CP023617.1_2061499-2061481|NZ_CP023617.1_2061946-2061928|NZ_CP023617.1_2062045-2062027|NZ_CP023617.1_2802059-2802041|NZ_CP023617.1_2805587-2805569|NZ_CP023617.1_150185-150203|NZ_CP023617.1_333785-333767|NZ_CP023617.1_335204-335186|NZ_CP023617.1_338006-337988|NZ_CP023617.1_338135-338117|NZ_CP023617.1_338402-338384|NZ_CP023617.1_338431-338449|NZ_CP023617.1_338525-338507|NZ_CP023617.1_363056-363038|NZ_CP023617.1_443415-443397|NZ_CP023617.1_546759-546741|NZ_CP023617.1_623949-623967|NZ_CP023617.1_624171-624189|NZ_CP023617.1_673924-673906|NZ_CP023617.1_840180-840198|NZ_CP023617.1_1090943-1090961|NZ_CP023617.1_1091591-1091609|NZ_CP023617.1_1095649-1095631|NZ_CP023617.1_1212974-1212992|NZ_CP023617.1_1213364-1213382|NZ_CP023617.1_1218006-1218024|NZ_CP023617.1_1489176-1489158|NZ_CP023617.1_1618628-1618610|NZ_CP023617.1_1619081-1619063|NZ_CP023617.1_1636003-1635985|NZ_CP023617.1_1636012-1635994|NZ_CP023617.1_1864291-1864273|NZ_CP023617.1_1864819-1864801|NZ_CP023617.1_1990050-1990032|NZ_CP023617.1_2001412-2001430|NZ_CP023617.1_2088769-2088751|NZ_CP023617.1_2303469-2303451|NZ_CP023617.1_2356922-2356904|NZ_CP023617.1_2419572-2419590|NZ_CP023617.1_2423659-2423641|NZ_CP023617.1_2569153-2569135|NZ_CP023617.1_2693449-2693467|NZ_CP023617.1_2795373-2795355|NZ_CP023617.1_2795955-2795937|NZ_CP023617.1_3054546-3054564|NZ_CP023617.1_3054645-3054663|NZ_CP023617.1_3705380-3705398|NZ_CP023617.1_3737357-3737339|NZ_CP023617.1_3737981-3737963|NZ_CP023617.1_3738224-3738206|NZ_CP023617.1_3738357-3738339|NZ_CP023617.1_3802211-3802229|NZ_CP023617.1_3802394-3802412|NZ_CP023617.1_3802562-3802580|NZ_CP023617.1_3930332-3930350|NZ_CP023617.1_3932062-3932080|NZ_CP023617.1_3940560-3940578|NZ_CP023617.1_4031535-4031517|NZ_CP023617.1_4094060-4094078	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023617.1_1207351_1207618_+,NA|61aa|down_3|NZ_CP023617.1_1215193_1215376_+,NA|35aa|down_4|NZ_CP023617.1_1215485_1215590_+	NA|465aa|up_9|NZ_CP023617.1_1201685_1203080_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023617.1_1203281_1204004_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023617.1_1204035_1205202_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023617.1_1205272_1205767_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023617.1_1205952_1206387_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023617.1_1206488_1207355_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023617.1_1207351_1207618_+	NA	NA|674aa|up_2|NZ_CP023617.1_1207604_1209626_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023617.1_1209724_1210453_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023617.1_1210563_1211352_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023617.1_1214008_1214329_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023617.1_1214481_1214916_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023617.1_1215014_1215182_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023617.1_1215193_1215376_+	NA	NA|35aa|down_4|NZ_CP023617.1_1215485_1215590_+	NA	NA|152aa|down_5|NZ_CP023617.1_1215567_1216023_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023617.1_1216437_1218999_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023617.1_1219216_1220155_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023617.1_1220542_1221823_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023617.1_1221927_1222755_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	9	1572151-1573223	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_6|NZ_CP023617.1_1563915_1564233_+,NA	NA|275aa|up_9|NZ_CP023617.1_1560411_1561236_+	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|103aa|up_8|NZ_CP023617.1_1561430_1561739_+	pfam00934, PE, PE family	NA|540aa|up_7|NZ_CP023617.1_1561735_1563355_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_6|NZ_CP023617.1_1563915_1564233_+	NA	NA|209aa|up_5|NZ_CP023617.1_1564367_1564994_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_4|NZ_CP023617.1_1565059_1565392_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_3|NZ_CP023617.1_1565407_1566664_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_2|NZ_CP023617.1_1566791_1568003_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_1|NZ_CP023617.1_1568075_1569554_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_0|NZ_CP023617.1_1569550_1570936_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|134aa|down_0|NZ_CP023617.1_1574077_1574479_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023617.1_1574475_1574733_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023617.1_1574815_1575775_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023617.1_1575799_1576762_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023617.1_1576895_1577498_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023617.1_1577578_1579546_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023617.1_1579563_1580388_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023617.1_1580556_1581039_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023617.1_1581110_1581935_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023617.1_1582131_1583070_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	10	1636867-1637055	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGGCCCCGCCGGC	18	1	2	1636966-1636983|1636966-1636983	NZ_CP023617.1_2801966-2801983|NZ_CP023617.1_3766595-3766612	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023617.1_1623089_1623203_-,NA|137aa|up_7|NZ_CP023617.1_1623252_1623663_-,NA|288aa|down_2|NZ_CP023617.1_1640645_1641509_+	NA|162aa|up_9|NZ_CP023617.1_1622172_1622658_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023617.1_1623089_1623203_-	NA	NA|137aa|up_7|NZ_CP023617.1_1623252_1623663_-	NA	NA|248aa|up_6|NZ_CP023617.1_1623679_1624423_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023617.1_1624419_1625331_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023617.1_1625383_1626928_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023617.1_1626924_1628046_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023617.1_1628062_1630165_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023617.1_1630603_1634593_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023617.1_1634994_1635921_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023617.1_1638346_1639612_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023617.1_1639639_1640626_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023617.1_1640645_1641509_+	NA	NA|311aa|down_3|NZ_CP023617.1_1641458_1642391_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023617.1_1642502_1643288_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023617.1_1643284_1644226_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023617.1_1644328_1646104_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023617.1_1646151_1646958_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023617.1_1646954_1649495_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023617.1_1649491_1650685_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	11	2088241-2088495	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088322-2088339|2088322-2088339|2088412-2088429	NZ_CP023617.1_401081-401064|NZ_CP023617.1_607404-607387|NZ_CP023617.1_3450138-3450121	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023617.1_2087600_2087864_-,NA	NA|165aa|up_9|NZ_CP023617.1_2073894_2074389_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023617.1_2074792_2075470_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023617.1_2075828_2078654_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023617.1_2078880_2079741_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023617.1_2079781_2080648_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023617.1_2080652_2082539_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023617.1_2082554_2084588_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023617.1_2084707_2086933_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023617.1_2087208_2087604_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023617.1_2087600_2087864_-	NA	NA|346aa|down_0|NZ_CP023617.1_2089632_2090670_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023617.1_2090669_2092037_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023617.1_2092210_2093647_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023617.1_2093682_2095134_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023617.1_2095163_2096114_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023617.1_2096128_2096545_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023617.1_2096822_2097245_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023617.1_2097293_2097596_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023617.1_2097592_2097907_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023617.1_2097906_2099640_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	12	2163333-2163437	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023617.1_2159877_2160285_-,NA|127aa|down_6|NZ_CP023617.1_2176506_2176887_-	NA|216aa|up_9|NZ_CP023617.1_2153191_2153839_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023617.1_2153845_2156068_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023617.1_2156105_2156549_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023617.1_2156662_2157256_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023617.1_2157338_2157944_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023617.1_2158043_2159048_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023617.1_2159147_2159900_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023617.1_2159877_2160285_-	NA	NA|368aa|up_1|NZ_CP023617.1_2160419_2161523_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023617.1_2161522_2162719_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023617.1_2167605_2170569_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023617.1_2171017_2171482_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023617.1_2171579_2172443_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023617.1_2172480_2173752_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023617.1_2174023_2175139_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023617.1_2175129_2176470_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023617.1_2176506_2176887_-	NA	NA|621aa|down_7|NZ_CP023617.1_2177043_2178906_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023617.1_2178913_2179393_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023617.1_2179629_2180403_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	13	2168771-2168990	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023617.1_2159877_2160285_-,NA|127aa|down_5|NZ_CP023617.1_2176506_2176887_-	NA|741aa|up_9|NZ_CP023617.1_2153845_2156068_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023617.1_2156105_2156549_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023617.1_2156662_2157256_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023617.1_2157338_2157944_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023617.1_2158043_2159048_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023617.1_2159147_2159900_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023617.1_2159877_2160285_-	NA	NA|368aa|up_2|NZ_CP023617.1_2160419_2161523_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023617.1_2161522_2162719_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023617.1_2162888_2167268_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023617.1_2171017_2171482_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023617.1_2171579_2172443_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023617.1_2172480_2173752_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023617.1_2174023_2175139_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023617.1_2175129_2176470_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023617.1_2176506_2176887_-	NA	NA|621aa|down_6|NZ_CP023617.1_2177043_2178906_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023617.1_2178913_2179393_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023617.1_2179629_2180403_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023617.1_2180406_2181174_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	14	3119137-3120491	2,8,6	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023617.1_3112416_3112671_-,NA|135aa|up_7|NZ_CP023617.1_3112818_3113223_+,NA|64aa|up_6|NZ_CP023617.1_3113219_3113411_+,NA|86aa|up_4|NZ_CP023617.1_3114997_3115255_+,NA|104aa|up_3|NZ_CP023617.1_3115359_3115671_+,NA|203aa|up_2|NZ_CP023617.1_3116090_3116699_+,NA	NA|92aa|up_9|NZ_CP023617.1_3111965_3112241_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023617.1_3112416_3112671_-	NA	NA|135aa|up_7|NZ_CP023617.1_3112818_3113223_+	NA	NA|64aa|up_6|NZ_CP023617.1_3113219_3113411_+	NA	NA|385aa|up_5|NZ_CP023617.1_3113609_3114764_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023617.1_3114997_3115255_+	NA	NA|104aa|up_3|NZ_CP023617.1_3115359_3115671_+	NA	NA|203aa|up_2|NZ_CP023617.1_3116090_3116699_+	NA	NA|470aa|up_1|NZ_CP023617.1_3116769_3118179_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023617.1_3118175_3118988_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023617.1_3120517_3121779_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023617.1_3123576_3123918_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023617.1_3123918_3124935_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023617.1_3124947_3126096_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023617.1_3126191_3127319_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023617.1_3127315_3128224_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023617.1_3128204_3128915_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023617.1_3128924_3129299_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023617.1_3129295_3131734_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023617.1_3131730_3132453_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	15	3121814-3123528	9,7,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023617.1_3112416_3112671_-,NA|135aa|up_8|NZ_CP023617.1_3112818_3113223_+,NA|64aa|up_7|NZ_CP023617.1_3113219_3113411_+,NA|86aa|up_5|NZ_CP023617.1_3114997_3115255_+,NA|104aa|up_4|NZ_CP023617.1_3115359_3115671_+,NA|203aa|up_3|NZ_CP023617.1_3116090_3116699_+,NA	NA|85aa|up_9|NZ_CP023617.1_3112416_3112671_-	NA	NA|135aa|up_8|NZ_CP023617.1_3112818_3113223_+	NA	NA|64aa|up_7|NZ_CP023617.1_3113219_3113411_+	NA	NA|385aa|up_6|NZ_CP023617.1_3113609_3114764_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023617.1_3114997_3115255_+	NA	NA|104aa|up_4|NZ_CP023617.1_3115359_3115671_+	NA	NA|203aa|up_3|NZ_CP023617.1_3116090_3116699_+	NA	NA|470aa|up_2|NZ_CP023617.1_3116769_3118179_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023617.1_3118175_3118988_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023617.1_3120517_3121779_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023617.1_3123576_3123918_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023617.1_3123918_3124935_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023617.1_3124947_3126096_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023617.1_3126191_3127319_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023617.1_3127315_3128224_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023617.1_3128204_3128915_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023617.1_3128924_3129299_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023617.1_3129295_3131734_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023617.1_3131730_3132453_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023617.1_3132852_3133398_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	16	3232623-3232770	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAAGCGCGGCGCAGCCGCGCGCAGCGGGTCGCCACC	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|104aa|down_9|NZ_CP023617.1_3242909_3243221_+	NA|292aa|up_9|NZ_CP023617.1_3218298_3219174_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|196aa|up_8|NZ_CP023617.1_3219233_3219821_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|612aa|up_7|NZ_CP023617.1_3219822_3221658_-	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|586aa|up_6|NZ_CP023617.1_3221726_3223484_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|371aa|up_5|NZ_CP023617.1_3223527_3224640_-	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|526aa|up_4|NZ_CP023617.1_3224667_3226245_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|627aa|up_3|NZ_CP023617.1_3226322_3228203_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|809aa|up_2|NZ_CP023617.1_3228213_3230640_-	PRK03381, PRK03381, PII uridylyl-transferase; Provisional	NA|113aa|up_1|NZ_CP023617.1_3230697_3231036_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|478aa|up_0|NZ_CP023617.1_3231032_3232466_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|423aa|down_0|NZ_CP023617.1_3232810_3234079_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1206aa|down_1|NZ_CP023617.1_3234128_3237746_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|94aa|down_2|NZ_CP023617.1_3237757_3238039_-	PRK14422, PRK14422, acylphosphatase; Provisional	NA|138aa|down_3|NZ_CP023617.1_3238025_3238439_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|290aa|down_4|NZ_CP023617.1_3238540_3239410_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|241aa|down_5|NZ_CP023617.1_3239768_3240491_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|208aa|down_6|NZ_CP023617.1_3240487_3241111_-	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|246aa|down_7|NZ_CP023617.1_3241161_3241899_-	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|262aa|down_8|NZ_CP023617.1_3242137_3242923_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|104aa|down_9|NZ_CP023617.1_3242909_3243221_+	NA
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	17	3740551-3741092	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023617.1_3755184_3755472_-,NA|87aa|down_9|NZ_CP023617.1_3768592_3768853_-	NA|282aa|up_9|NZ_CP023617.1_3719802_3720648_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023617.1_3721122_3721563_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023617.1_3721596_3722466_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023617.1_3722486_3723497_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023617.1_3723781_3724414_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023617.1_3724480_3725710_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023617.1_3725992_3727342_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023617.1_3727353_3728493_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023617.1_3728489_3729221_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023617.1_3729229_3736801_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023617.1_3743054_3743312_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023617.1_3743567_3753041_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023617.1_3753666_3754113_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023617.1_3754149_3754890_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023617.1_3755184_3755472_-	NA	NA|3717aa|down_5|NZ_CP023617.1_3755808_3766959_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023617.1_3767202_3767997_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023617.1_3768078_3768450_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023617.1_3768347_3768566_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023617.1_3768592_3768853_-	NA
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	18	3948168-3949919	9	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948759-3948794|3948759-3948794|3948759-3948794|3948759-3948794|3948759-3948794|3949650-3949676|3949650-3949676|3949650-3949676|3949650-3949676	NZ_CP023617.1_3946875-3946910|NZ_CP023617.1_3947217-3947252|NZ_CP023617.1_3947808-3947843|NZ_CP023617.1_3948159-3948194|NZ_CP023617.1_3932617-3932652|NZ_CP023617.1_361996-362022|NZ_CP023617.1_3941061-3941087|NZ_CP023617.1_3941397-3941423|NZ_CP023617.1_3941743-3941769	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023617.1_3953234_3954074_+	NA|318aa|up_9|NZ_CP023617.1_3920899_3921853_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023617.1_3921877_3922069_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023617.1_3922283_3923486_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023617.1_3923510_3924632_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023617.1_3924702_3926211_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023617.1_3926381_3930527_+	pfam00934, PE, PE family	NA|1899aa|up_3|NZ_CP023617.1_3930817_3936514_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023617.1_3936680_3938228_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023617.1_3938224_3939061_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023617.1_3944895_3945552_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023617.1_3950627_3952274_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023617.1_3952347_3953139_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023617.1_3953234_3954074_+	NA	NA|399aa|down_3|NZ_CP023617.1_3954128_3955325_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023617.1_3955353_3956064_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023617.1_3956128_3957172_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023617.1_3957324_3958236_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023617.1_3958251_3959316_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023617.1_3959332_3960517_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023617.1_3960558_3961590_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447755.1_ASM244775v1	NZ_CP023617	Mycobacterium tuberculosis strain LN3672 chromosome, complete genome	19	4110477-4110565	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023617.1_4101063_4101834_-,NA|119aa|up_3|NZ_CP023617.1_4106968_4107325_+,NA|52aa|up_2|NZ_CP023617.1_4107424_4107580_+,NA|233aa|up_0|NZ_CP023617.1_4109581_4110280_-,NA|126aa|down_6|NZ_CP023617.1_4115800_4116178_+	NA|288aa|up_9|NZ_CP023617.1_4099445_4100309_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023617.1_4101063_4101834_-	NA	NA|549aa|up_7|NZ_CP023617.1_4101830_4103477_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023617.1_4103473_4104337_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023617.1_4104329_4105256_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023617.1_4105257_4106883_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023617.1_4106968_4107325_+	NA	NA|52aa|up_2|NZ_CP023617.1_4107424_4107580_+	NA	NA|652aa|up_1|NZ_CP023617.1_4107590_4109546_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023617.1_4109581_4110280_-	NA	NA|173aa|down_0|NZ_CP023617.1_4110625_4111144_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023617.1_4111144_4112128_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023617.1_4112120_4113314_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023617.1_4113319_4114141_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023617.1_4114272_4114956_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023617.1_4114955_4115693_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023617.1_4115800_4116178_+	NA	NA|225aa|down_7|NZ_CP023617.1_4116276_4116951_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023617.1_4117056_4117851_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023617.1_4117857_4118313_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
