assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	1	333627-334425	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023615.1_333142_333325_-,NA	NA|398aa|up_9|NZ_CP023615.1_323320_324514_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023615.1_324549_326232_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023615.1_326248_328444_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023615.1_328557_329691_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023615.1_329687_330308_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023615.1_330404_330986_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023615.1_330915_331641_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023615.1_331730_332651_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023615.1_332690_333119_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023615.1_333142_333325_-	NA	NA|838aa|down_0|NZ_CP023615.1_336542_339056_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023615.1_339346_340957_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023615.1_340980_341889_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023615.1_342112_344008_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023615.1_344004_345621_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023615.1_345617_349610_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023615.1_349606_349915_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023615.1_349917_351459_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023615.1_351507_351801_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023615.1_351830_352121_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	2	338087-338309	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023615.1_333142_333325_-,NA	NA|561aa|up_9|NZ_CP023615.1_324549_326232_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023615.1_326248_328444_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023615.1_328557_329691_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023615.1_329687_330308_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023615.1_330404_330986_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023615.1_330915_331641_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023615.1_331730_332651_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023615.1_332690_333119_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023615.1_333142_333325_-	NA	NA|958aa|up_0|NZ_CP023615.1_333419_336293_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP023615.1_339346_340957_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023615.1_340980_341889_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023615.1_342112_344008_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023615.1_344004_345621_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023615.1_345617_349610_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023615.1_349606_349915_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023615.1_349917_351459_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023615.1_351507_351801_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023615.1_351830_352121_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023615.1_352131_353019_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	3	366446-367144	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366734-366775|366809-366841	NZ_CP023615.1_374765-374806|NZ_CP023615.1_373580-373612	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023615.1_363458_363761_+,NA|161aa|down_1|NZ_CP023615.1_376554_377037_-	NA|262aa|up_9|NZ_CP023615.1_358153_358939_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023615.1_358927_359731_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023615.1_359740_361138_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023615.1_361316_363092_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023615.1_363234_363462_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023615.1_363458_363761_+	NA	NA|74aa|up_3|NZ_CP023615.1_363808_364030_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023615.1_364026_364452_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023615.1_364587_365220_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023615.1_365216_366125_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023615.1_375895_376567_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023615.1_376554_377037_-	NA	NA|239aa|down_2|NZ_CP023615.1_377094_377811_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023615.1_377912_378569_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023615.1_378638_379130_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|621aa|down_5|NZ_CP023615.1_380536_382399_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_6|NZ_CP023615.1_382470_382857_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_7|NZ_CP023615.1_382859_383522_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_8|NZ_CP023615.1_383582_384467_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]	NA|205aa|down_9|NZ_CP023615.1_384515_385130_+	COG4829, CatC1, Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	4	631231-631368	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631249-631266|631249-631266|631333-631350	NZ_CP023615.1_22466-22483|NZ_CP023615.1_1412030-1412047|NZ_CP023615.1_973196-973213	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023615.1_622069_622231_-,NA|478aa|up_0|NZ_CP023615.1_628246_629680_-,NA|450aa|down_2|NZ_CP023615.1_633003_634353_-,NA|93aa|down_5|NZ_CP023615.1_635883_636162_-	NA|325aa|up_9|NZ_CP023615.1_619839_620814_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023615.1_620855_622073_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023615.1_622069_622231_-	NA	NA|106aa|up_6|NZ_CP023615.1_622277_622595_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023615.1_622741_624526_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023615.1_624421_625429_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023615.1_625510_626389_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023615.1_626405_627200_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023615.1_627196_628237_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023615.1_628246_629680_-	NA	NA|211aa|down_0|NZ_CP023615.1_631691_632324_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023615.1_632320_632983_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023615.1_633003_634353_-	NA	NA|381aa|down_3|NZ_CP023615.1_634364_635507_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023615.1_635521_635824_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023615.1_635883_636162_-	NA	NA|418aa|down_6|NZ_CP023615.1_636158_637412_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023615.1_637531_637918_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023615.1_637980_638865_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023615.1_638960_639863_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	5	691980-692056	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023615.1_677875_678283_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023615.1_678342_679029_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023615.1_679182_681816_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023615.1_681838_684226_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023615.1_684363_685086_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023615.1_685082_685880_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023615.1_685881_686769_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023615.1_686774_687989_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023615.1_689012_690458_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023615.1_690454_691891_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023615.1_693191_694742_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023615.1_694793_695186_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023615.1_695182_695440_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023615.1_695622_696858_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023615.1_697108_697522_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023615.1_697518_697755_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023615.1_697858_698365_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023615.1_698478_698949_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023615.1_698992_699754_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023615.1_699810_700122_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	6	926576-927523	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927359-927394|927359-927394|927359-927394	NZ_CP023615.1_675077-675042|NZ_CP023615.1_1213709-1213744|NZ_CP023615.1_2423702-2423667	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023615.1_931524_932076_-,NA|81aa|down_8|NZ_CP023615.1_937539_937782_+	NA|685aa|up_9|NZ_CP023615.1_914212_916267_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023615.1_916432_917602_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023615.1_917689_918706_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023615.1_918867_919509_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023615.1_919589_920645_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023615.1_920696_921089_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023615.1_921146_921569_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023615.1_921530_921821_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023615.1_921925_922831_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023615.1_922849_923665_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023615.1_927792_930432_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023615.1_930899_931544_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023615.1_931524_932076_-	NA	NA|218aa|down_3|NZ_CP023615.1_932225_932879_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023615.1_932949_933978_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023615.1_934666_935437_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023615.1_935523_936336_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023615.1_936403_937264_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023615.1_937539_937782_+	NA	NA|431aa|down_9|NZ_CP023615.1_938058_939351_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	7	1191276-1191384	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023615.1_1180643_1182275_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023615.1_1182350_1183415_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023615.1_1183467_1183941_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023615.1_1183974_1184838_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023615.1_1184842_1185700_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023615.1_1185700_1186783_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023615.1_1186863_1187283_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023615.1_1187394_1187961_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023615.1_1187957_1188353_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023615.1_1188380_1190384_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023615.1_1192469_1194233_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023615.1_1194229_1195003_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023615.1_1195014_1196052_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023615.1_1196238_1197075_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023615.1_1197190_1198042_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023615.1_1198115_1199333_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023615.1_1199385_1200330_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023615.1_1200552_1201620_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023615.1_1201676_1203071_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023615.1_1203272_1203995_+	pfam06271, RDD, RDD family
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	8	1211910-1212766	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	72	1212293-1212314|1212338-1212353|1212476-1212497|1212476-1212497|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611|1212593-1212611	NZ_CP023615.1_2960435-2960414|NZ_CP023615.1_2088594-2088579|NZ_CP023615.1_837389-837410|NZ_CP023615.1_1217604-1217625|NZ_CP023615.1_674741-674723|NZ_CP023615.1_840451-840469|NZ_CP023615.1_1213436-1213454|NZ_CP023615.1_1217577-1217595|NZ_CP023615.1_1217649-1217667|NZ_CP023615.1_1630668-1630650|NZ_CP023615.1_1633494-1633476|NZ_CP023615.1_1990804-1990786|NZ_CP023615.1_2061522-2061504|NZ_CP023615.1_2061969-2061951|NZ_CP023615.1_2062068-2062050|NZ_CP023615.1_2801985-2801967|NZ_CP023615.1_2805513-2805495|NZ_CP023615.1_150162-150180|NZ_CP023615.1_335184-335166|NZ_CP023615.1_335637-335619|NZ_CP023615.1_335688-335670|NZ_CP023615.1_335697-335679|NZ_CP023615.1_337986-337968|NZ_CP023615.1_338382-338364|NZ_CP023615.1_338411-338429|NZ_CP023615.1_338505-338487|NZ_CP023615.1_363036-363018|NZ_CP023615.1_443394-443376|NZ_CP023615.1_546738-546720|NZ_CP023615.1_623932-623950|NZ_CP023615.1_624154-624172|NZ_CP023615.1_673907-673889|NZ_CP023615.1_840172-840190|NZ_CP023615.1_1090938-1090956|NZ_CP023615.1_1091586-1091604|NZ_CP023615.1_1095645-1095627|NZ_CP023615.1_1212965-1212983|NZ_CP023615.1_1213355-1213373|NZ_CP023615.1_1217997-1218015|NZ_CP023615.1_1489174-1489156|NZ_CP023615.1_1618632-1618614|NZ_CP023615.1_1619085-1619067|NZ_CP023615.1_1636007-1635989|NZ_CP023615.1_1636016-1635998|NZ_CP023615.1_1864296-1864278|NZ_CP023615.1_1864824-1864806|NZ_CP023615.1_1990078-1990060|NZ_CP023615.1_2001439-2001457|NZ_CP023615.1_2088792-2088774|NZ_CP023615.1_2303470-2303452|NZ_CP023615.1_2356917-2356899|NZ_CP023615.1_2419528-2419546|NZ_CP023615.1_2423615-2423597|NZ_CP023615.1_2569107-2569089|NZ_CP023615.1_2693402-2693420|NZ_CP023615.1_2795300-2795282|NZ_CP023615.1_2795882-2795864|NZ_CP023615.1_3054475-3054493|NZ_CP023615.1_3054574-3054592|NZ_CP023615.1_3705390-3705408|NZ_CP023615.1_3737368-3737350|NZ_CP023615.1_3737992-3737974|NZ_CP023615.1_3738235-3738217|NZ_CP023615.1_3738368-3738350|NZ_CP023615.1_3802231-3802249|NZ_CP023615.1_3802414-3802432|NZ_CP023615.1_3802582-3802600|NZ_CP023615.1_3930383-3930401|NZ_CP023615.1_3932113-3932131|NZ_CP023615.1_3940620-3940638|NZ_CP023615.1_4031597-4031579|NZ_CP023615.1_4094123-4094141	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023615.1_1207342_1207609_+,NA|61aa|down_3|NZ_CP023615.1_1215184_1215367_+,NA|35aa|down_4|NZ_CP023615.1_1215476_1215581_+	NA|465aa|up_9|NZ_CP023615.1_1201676_1203071_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023615.1_1203272_1203995_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023615.1_1204026_1205193_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023615.1_1205263_1205758_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023615.1_1205943_1206378_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023615.1_1206479_1207346_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023615.1_1207342_1207609_+	NA	NA|674aa|up_2|NZ_CP023615.1_1207595_1209617_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023615.1_1209715_1210444_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023615.1_1210554_1211343_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023615.1_1213999_1214320_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023615.1_1214472_1214907_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023615.1_1215008_1215173_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023615.1_1215184_1215367_+	NA	NA|35aa|down_4|NZ_CP023615.1_1215476_1215581_+	NA	NA|152aa|down_5|NZ_CP023615.1_1215558_1216014_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023615.1_1216428_1218990_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023615.1_1219207_1220146_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023615.1_1220533_1221814_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023615.1_1221918_1222746_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	9	1572149-1573221	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023615.1_1563912_1564230_+,NA	NA|103aa|up_9|NZ_CP023615.1_1561427_1561736_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023615.1_1561732_1563352_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023615.1_1563912_1564230_+	NA	NA|209aa|up_6|NZ_CP023615.1_1564364_1564991_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023615.1_1565056_1565389_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023615.1_1565404_1566661_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023615.1_1566788_1568000_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023615.1_1568072_1569551_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023615.1_1569547_1570933_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023615.1_1571010_1572045_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023615.1_1574075_1574477_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023615.1_1574473_1574731_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023615.1_1574813_1575773_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023615.1_1575797_1576760_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023615.1_1576893_1577496_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023615.1_1577576_1579544_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023615.1_1579561_1580386_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023615.1_1580554_1581037_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023615.1_1581108_1581933_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023615.1_1582129_1583068_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	10	1636871-1637059	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGGCCCCGCCGGC	18	1	2	1636970-1636987|1636970-1636987	NZ_CP023615.1_2801892-2801909|NZ_CP023615.1_3766615-3766632	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023615.1_1623093_1623207_-,NA|137aa|up_7|NZ_CP023615.1_1623256_1623667_-,NA|288aa|down_2|NZ_CP023615.1_1640649_1641513_+	NA|162aa|up_9|NZ_CP023615.1_1622176_1622662_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023615.1_1623093_1623207_-	NA	NA|137aa|up_7|NZ_CP023615.1_1623256_1623667_-	NA	NA|248aa|up_6|NZ_CP023615.1_1623683_1624427_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023615.1_1624423_1625335_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023615.1_1625387_1626932_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023615.1_1626928_1628050_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023615.1_1628066_1630169_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023615.1_1630607_1634597_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023615.1_1634998_1635925_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023615.1_1638350_1639616_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023615.1_1639643_1640630_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023615.1_1640649_1641513_+	NA	NA|311aa|down_3|NZ_CP023615.1_1641462_1642395_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023615.1_1642506_1643292_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023615.1_1643288_1644230_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023615.1_1644332_1646108_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023615.1_1646155_1646962_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023615.1_1646958_1649499_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023615.1_1649495_1650689_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	11	2088264-2088518	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088345-2088362|2088345-2088362|2088435-2088452	NZ_CP023615.1_401060-401043|NZ_CP023615.1_607387-607370|NZ_CP023615.1_3450085-3450068	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023615.1_2087623_2087887_-,NA	NA|165aa|up_9|NZ_CP023615.1_2073917_2074412_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023615.1_2074815_2075493_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023615.1_2075851_2078677_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023615.1_2078903_2079764_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023615.1_2079804_2080671_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023615.1_2080675_2082562_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023615.1_2082577_2084611_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023615.1_2084730_2086956_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023615.1_2087231_2087627_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023615.1_2087623_2087887_-	NA	NA|346aa|down_0|NZ_CP023615.1_2089655_2090693_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023615.1_2090692_2092060_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023615.1_2092233_2093670_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023615.1_2093705_2095157_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023615.1_2095186_2096137_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023615.1_2096151_2096568_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023615.1_2096845_2097268_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023615.1_2097316_2097619_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023615.1_2097615_2097930_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023615.1_2097929_2099663_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	12	2163357-2163461	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023615.1_2152404_2152875_-,NA|136aa|up_1|NZ_CP023615.1_2159900_2160308_-,NA|127aa|down_6|NZ_CP023615.1_2176530_2176911_-	NA|157aa|up_9|NZ_CP023615.1_2152404_2152875_-	NA	NA|216aa|up_8|NZ_CP023615.1_2153214_2153862_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023615.1_2153868_2156091_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023615.1_2156128_2156572_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023615.1_2156685_2157279_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023615.1_2157361_2157967_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023615.1_2158066_2159071_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023615.1_2159170_2159923_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023615.1_2159900_2160308_-	NA	NA|767aa|up_0|NZ_CP023615.1_2160442_2162743_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023615.1_2167629_2170593_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023615.1_2171041_2171506_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023615.1_2171603_2172467_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023615.1_2172504_2173776_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023615.1_2174047_2175163_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023615.1_2175153_2176494_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023615.1_2176530_2176911_-	NA	NA|621aa|down_7|NZ_CP023615.1_2177067_2178930_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023615.1_2178937_2179417_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023615.1_2179653_2180427_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	13	2168795-2169014	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023615.1_2159900_2160308_-,NA|127aa|down_5|NZ_CP023615.1_2176530_2176911_-	NA|216aa|up_9|NZ_CP023615.1_2153214_2153862_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023615.1_2153868_2156091_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023615.1_2156128_2156572_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023615.1_2156685_2157279_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023615.1_2157361_2157967_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023615.1_2158066_2159071_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023615.1_2159170_2159923_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023615.1_2159900_2160308_-	NA	NA|767aa|up_1|NZ_CP023615.1_2160442_2162743_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023615.1_2162912_2167292_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023615.1_2171041_2171506_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023615.1_2171603_2172467_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023615.1_2172504_2173776_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023615.1_2174047_2175163_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023615.1_2175153_2176494_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023615.1_2176530_2176911_-	NA	NA|621aa|down_6|NZ_CP023615.1_2177067_2178930_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023615.1_2178937_2179417_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023615.1_2179653_2180427_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023615.1_2181220_2181865_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	14	3119067-3120421	2,8,6	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,17,18	18	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023615.1_3112346_3112601_-,NA|135aa|up_7|NZ_CP023615.1_3112748_3113153_+,NA|64aa|up_6|NZ_CP023615.1_3113149_3113341_+,NA|86aa|up_4|NZ_CP023615.1_3114927_3115185_+,NA|104aa|up_3|NZ_CP023615.1_3115289_3115601_+,NA|203aa|up_2|NZ_CP023615.1_3116020_3116629_+,NA	NA|92aa|up_9|NZ_CP023615.1_3111895_3112171_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023615.1_3112346_3112601_-	NA	NA|135aa|up_7|NZ_CP023615.1_3112748_3113153_+	NA	NA|64aa|up_6|NZ_CP023615.1_3113149_3113341_+	NA	NA|385aa|up_5|NZ_CP023615.1_3113539_3114694_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023615.1_3114927_3115185_+	NA	NA|104aa|up_3|NZ_CP023615.1_3115289_3115601_+	NA	NA|203aa|up_2|NZ_CP023615.1_3116020_3116629_+	NA	NA|470aa|up_1|NZ_CP023615.1_3116699_3118109_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023615.1_3118105_3118918_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023615.1_3120447_3121709_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023615.1_3123506_3123848_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023615.1_3123848_3124865_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023615.1_3124877_3126026_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023615.1_3126121_3127249_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023615.1_3127245_3128154_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023615.1_3128134_3128845_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023615.1_3128854_3129229_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023615.1_3129225_3131664_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023615.1_3131660_3132383_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	15	3121744-3123458	9,7,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023615.1_3112346_3112601_-,NA|135aa|up_8|NZ_CP023615.1_3112748_3113153_+,NA|64aa|up_7|NZ_CP023615.1_3113149_3113341_+,NA|86aa|up_5|NZ_CP023615.1_3114927_3115185_+,NA|104aa|up_4|NZ_CP023615.1_3115289_3115601_+,NA|203aa|up_3|NZ_CP023615.1_3116020_3116629_+,NA	NA|85aa|up_9|NZ_CP023615.1_3112346_3112601_-	NA	NA|135aa|up_8|NZ_CP023615.1_3112748_3113153_+	NA	NA|64aa|up_7|NZ_CP023615.1_3113149_3113341_+	NA	NA|385aa|up_6|NZ_CP023615.1_3113539_3114694_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023615.1_3114927_3115185_+	NA	NA|104aa|up_4|NZ_CP023615.1_3115289_3115601_+	NA	NA|203aa|up_3|NZ_CP023615.1_3116020_3116629_+	NA	NA|470aa|up_2|NZ_CP023615.1_3116699_3118109_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023615.1_3118105_3118918_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023615.1_3120447_3121709_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023615.1_3123506_3123848_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023615.1_3123848_3124865_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023615.1_3124877_3126026_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023615.1_3126121_3127249_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023615.1_3127245_3128154_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023615.1_3128134_3128845_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023615.1_3128854_3129229_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023615.1_3129225_3131664_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023615.1_3131660_3132383_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023615.1_3132782_3133328_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	16	3740562-3741103	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023615.1_3755204_3755492_-,NA|87aa|down_9|NZ_CP023615.1_3768612_3768873_-	NA|282aa|up_9|NZ_CP023615.1_3719813_3720659_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023615.1_3721133_3721574_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023615.1_3721607_3722477_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023615.1_3722497_3723508_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023615.1_3723792_3724425_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023615.1_3724491_3725721_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023615.1_3726003_3727353_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023615.1_3727364_3728504_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023615.1_3728500_3729232_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023615.1_3729240_3736812_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023615.1_3743074_3743332_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023615.1_3743587_3753061_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023615.1_3753686_3754133_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023615.1_3754169_3754910_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023615.1_3755204_3755492_-	NA	NA|3717aa|down_5|NZ_CP023615.1_3755828_3766979_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023615.1_3767222_3768017_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023615.1_3768098_3768470_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023615.1_3768367_3768586_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023615.1_3768612_3768873_-	NA
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	17	3948228-3949979	9	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	8	3948819-3948854|3948819-3948854|3948819-3948854|3948819-3948854|3948819-3948854|3949710-3949736|3949710-3949736|3949710-3949736	NZ_CP023615.1_3946935-3946970|NZ_CP023615.1_3947277-3947312|NZ_CP023615.1_3947868-3947903|NZ_CP023615.1_3948219-3948254|NZ_CP023615.1_3932668-3932703|NZ_CP023615.1_3941121-3941147|NZ_CP023615.1_3941457-3941483|NZ_CP023615.1_3941803-3941829	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023615.1_3953294_3954134_+	NA|318aa|up_9|NZ_CP023615.1_3920959_3921913_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023615.1_3921937_3922129_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023615.1_3922343_3923546_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023615.1_3923570_3924692_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023615.1_3924762_3926271_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1379aa|up_4|NZ_CP023615.1_3926441_3930578_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023615.1_3930868_3936574_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023615.1_3936740_3938288_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023615.1_3938284_3939121_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023615.1_3944955_3945612_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023615.1_3950687_3952334_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023615.1_3952407_3953199_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023615.1_3953294_3954134_+	NA	NA|399aa|down_3|NZ_CP023615.1_3954188_3955385_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023615.1_3955413_3956124_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023615.1_3956188_3957232_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023615.1_3957384_3958296_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023615.1_3958311_3959376_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023615.1_3960618_3961650_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023615.1_3961663_3962188_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002447715.1_ASM244771v1	NZ_CP023615	Mycobacterium tuberculosis strain LN3589 chromosome, complete genome	18	4110540-4110628	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023615.1_4101126_4101897_-,NA|119aa|up_3|NZ_CP023615.1_4107031_4107388_+,NA|52aa|up_2|NZ_CP023615.1_4107487_4107643_+,NA|233aa|up_0|NZ_CP023615.1_4109644_4110343_-,NA|126aa|down_6|NZ_CP023615.1_4115863_4116241_+	NA|288aa|up_9|NZ_CP023615.1_4099508_4100372_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023615.1_4101126_4101897_-	NA	NA|549aa|up_7|NZ_CP023615.1_4101893_4103540_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023615.1_4103536_4104400_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023615.1_4104392_4105319_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023615.1_4105320_4106946_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023615.1_4107031_4107388_+	NA	NA|52aa|up_2|NZ_CP023615.1_4107487_4107643_+	NA	NA|652aa|up_1|NZ_CP023615.1_4107653_4109609_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023615.1_4109644_4110343_-	NA	NA|173aa|down_0|NZ_CP023615.1_4110688_4111207_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023615.1_4111207_4112191_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023615.1_4112183_4113377_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023615.1_4113382_4114204_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023615.1_4114335_4115019_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023615.1_4115018_4115756_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023615.1_4115863_4116241_+	NA	NA|225aa|down_7|NZ_CP023615.1_4116339_4117014_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023615.1_4117117_4117912_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023615.1_4117918_4118374_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
