The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023607	Mycobacterium tuberculosis strain LE371 chromosome, complete genome	4411137	2940937	2976303	4411137	terminase,transposase,capsid,tRNA,integrase,protease,head	Tupanvirus(11.11%)	41	2969738:2969765	2980720:2980747
WP_003413486.1|2940937_2943016_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943124_2943352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943348_2944734_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945078_2945579_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945595_2946036_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946182_2946860_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946844_2947198_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947210_2947636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947632_2948307_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948384_2949206_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949341_2950235_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950237_2951056_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951070_2952252_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952310_2952742_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953255_2954497_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954806_2955169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955515_2956640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956641_2957181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957320_2958619_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958657_2958939_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959083_2959569_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959595_2959853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959853_2962190_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962218_2962461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962461_2963139_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963334_2963991_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964153_2964600_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964774_2965107_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965226_2965586_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965687_2966146_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966281_2966662_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966658_2968155_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968344_2968581_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968653_2968827_+	hypothetical protein	NA	NA	NA	NA	NA
2969738:2969765	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969871_2970303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970299_2971298_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971311_2971776_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971908_2973169_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973543_2974983_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974990_2975524_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975676_2976303_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980720:2980747	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023607	Mycobacterium tuberculosis strain LE371 chromosome, complete genome	4411137	3710112	3796032	4411137	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710112_3711373_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711428_3711590_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711611_3713141_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713073_3714012_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714020_3715388_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715456_3716674_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716769_3718278_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718274_3719426_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_096874018.1|3719616_3720462_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720936_3721377_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721410_3722280_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722300_3723311_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723595_3724228_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724294_3725524_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725806_3727156_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727167_3728307_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728303_3729035_+	methyltransferase	NA	NA	NA	NA	NA
WP_096870245.1|3729043_3736615_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742868_3743126_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_096874019.1|3743381_3752855_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753480_3753927_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3753963_3754704_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3754998_3755286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755622_3766773_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767016_3767811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767892_3768264_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768161_3768380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768406_3768667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768781_3769171_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769184_3769478_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769474_3770320_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770443_3770719_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770715_3770973_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771014_3772205_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772321_3772690_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772686_3773238_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773244_3773826_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773806_3774175_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774152_3774545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774541_3777172_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777407_3777872_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778238_3780005_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780005_3780650_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780648_3781083_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781171_3784411_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784602_3785943_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3785984_3787160_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787213_3787318_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787396_3788038_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788038_3788287_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788291_3789719_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789826_3790480_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790518_3792024_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792028_3792919_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3792927_3794538_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794482_3794728_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794770_3796032_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
