The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023604	Mycobacterium tuberculosis strain LE76 chromosome, complete genome	4411211	2940930	2976296	4411211	head,capsid,transposase,terminase,tRNA,integrase,protease	Tupanvirus(11.11%)	41	2969731:2969758	2980713:2980740
WP_003413486.1|2940930_2943009_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943117_2943345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943341_2944727_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945071_2945572_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945588_2946029_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946175_2946853_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946837_2947191_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947203_2947629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947625_2948300_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948377_2949199_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949334_2950228_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950230_2951049_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951063_2952245_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952303_2952735_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953248_2954490_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954799_2955162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955508_2956633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956634_2957174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957313_2958612_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958650_2958932_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959076_2959562_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959588_2959846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070890790.1|2959846_2962183_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962211_2962454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962454_2963132_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963327_2963984_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964146_2964593_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964767_2965100_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965219_2965579_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965680_2966139_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966274_2966655_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_096865888.1|2966651_2968148_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968337_2968574_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968646_2968820_+	hypothetical protein	NA	NA	NA	NA	NA
2969731:2969758	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_009938550.1|2969864_2970296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970292_2971291_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971304_2971769_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971901_2973162_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973536_2974976_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974983_2975517_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975669_2976296_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980713:2980740	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023604	Mycobacterium tuberculosis strain LE76 chromosome, complete genome	4411211	3710150	3796079	4411211	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710150_3711411_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711466_3711628_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711649_3713179_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713111_3714050_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714058_3715426_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715494_3716712_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716807_3718316_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718312_3719464_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719654_3720500_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720974_3721415_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721448_3722318_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722338_3723349_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723633_3724266_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724332_3725562_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725844_3727194_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727205_3728345_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728341_3729073_+	methyltransferase	NA	NA	NA	NA	NA
WP_096865691.1|3729081_3736653_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742915_3743173_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743428_3752902_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753527_3753974_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754010_3754751_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755045_3755333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025997070.1|3755669_3766820_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767063_3767858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767939_3768311_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768208_3768427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768453_3768714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768828_3769218_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769231_3769525_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769521_3770367_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770490_3770766_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770762_3771020_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771061_3772252_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772368_3772737_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772733_3773285_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773291_3773873_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773853_3774222_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774199_3774592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774588_3777219_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777454_3777919_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778285_3780052_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780052_3780697_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780695_3781130_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781218_3784458_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784649_3785990_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786031_3787207_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787260_3787365_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787443_3788085_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788085_3788334_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788338_3789766_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789873_3790527_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790565_3792071_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_070890803.1|3792075_3792966_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3792974_3794585_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794529_3794775_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794817_3796079_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
