assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	1	338109-338331	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023603.1_333164_333347_-,NA	NA|561aa|up_9|NZ_CP023603.1_324571_326254_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023603.1_326270_328466_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023603.1_328579_329713_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023603.1_329709_330330_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023603.1_330426_331008_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023603.1_330937_331663_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023603.1_331752_332673_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023603.1_332712_333141_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023603.1_333164_333347_-	NA	NA|958aa|up_0|NZ_CP023603.1_333441_336315_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP023603.1_339368_340979_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023603.1_341002_341911_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023603.1_342134_344030_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023603.1_344026_345643_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1332aa|down_4|NZ_CP023603.1_345639_349635_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023603.1_349631_349940_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023603.1_349942_351484_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023603.1_351532_351826_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023603.1_351855_352146_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023603.1_352156_353044_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	2	366471-367169	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366759-366800|366834-366866	NZ_CP023603.1_374790-374831|NZ_CP023603.1_373605-373637	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023603.1_363483_363786_+,NA|161aa|down_1|NZ_CP023603.1_376579_377062_-,NA|410aa|down_5|NZ_CP023603.1_379178_380408_+	NA|262aa|up_9|NZ_CP023603.1_358178_358964_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023603.1_358952_359756_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023603.1_359765_361163_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023603.1_361341_363117_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023603.1_363259_363487_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023603.1_363483_363786_+	NA	NA|74aa|up_3|NZ_CP023603.1_363833_364055_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023603.1_364051_364477_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023603.1_364612_365245_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023603.1_365241_366150_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023603.1_375920_376592_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023603.1_376579_377062_-	NA	NA|239aa|down_2|NZ_CP023603.1_377119_377836_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023603.1_377937_378594_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023603.1_378663_379155_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023603.1_379178_380408_+	NA	NA|621aa|down_6|NZ_CP023603.1_380562_382425_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023603.1_382496_382883_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023603.1_382885_383548_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023603.1_383608_384493_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	3	692010-692086	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023603.1_677695_677911_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023603.1_677907_678315_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023603.1_678374_679061_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023603.1_679214_681848_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023603.1_681870_684258_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023603.1_684395_685118_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023603.1_685114_685912_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_2|NZ_CP023603.1_686059_686800_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023603.1_686805_688020_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023603.1_689043_690489_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023603.1_693221_694772_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023603.1_694823_695216_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023603.1_695212_695470_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023603.1_695652_696888_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023603.1_697138_697552_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023603.1_697548_697785_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023603.1_697888_698395_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023603.1_698508_698979_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023603.1_699022_699784_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023603.1_699840_700152_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	4	926606-927553	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927389-927424|927389-927424|927389-927424	NZ_CP023603.1_675114-675079|NZ_CP023603.1_1213690-1213725|NZ_CP023603.1_2423716-2423681	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP023603.1_931546_932098_-,NA|81aa|down_7|NZ_CP023603.1_937561_937804_+	NA|685aa|up_9|NZ_CP023603.1_914242_916297_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023603.1_916462_917632_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023603.1_917719_918736_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023603.1_918897_919539_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023603.1_919619_920675_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023603.1_920726_921119_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023603.1_921176_921599_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023603.1_921560_921851_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023603.1_921955_922861_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023603.1_922879_923695_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|215aa|down_0|NZ_CP023603.1_930921_931566_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP023603.1_931546_932098_-	NA	NA|218aa|down_2|NZ_CP023603.1_932247_932901_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP023603.1_932971_934000_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_4|NZ_CP023603.1_934688_935459_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP023603.1_935545_936358_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP023603.1_936425_937286_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_7|NZ_CP023603.1_937561_937804_+	NA	NA|431aa|down_8|NZ_CP023603.1_938080_939373_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP023603.1_939356_940361_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	5	1191296-1191404	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023603.1_1180663_1182295_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023603.1_1182370_1183435_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023603.1_1183487_1183961_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023603.1_1183994_1184858_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023603.1_1184862_1185720_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023603.1_1185720_1186803_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023603.1_1186883_1187303_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023603.1_1187414_1187981_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023603.1_1187977_1188373_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023603.1_1188400_1190404_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023603.1_1192489_1194253_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023603.1_1194249_1195023_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023603.1_1195034_1196072_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023603.1_1196258_1197095_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023603.1_1197210_1198062_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023603.1_1198135_1199353_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023603.1_1199405_1200350_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023603.1_1200572_1201640_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023603.1_1201696_1203091_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023603.1_1203292_1204015_+	pfam06271, RDD, RDD family
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	6	1211930-1212786	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	74	1212313-1212334|1212358-1212373|1212496-1212517|1212496-1212517|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631|1212613-1212631	NZ_CP023603.1_2960480-2960459|NZ_CP023603.1_2088549-2088534|NZ_CP023603.1_837419-837440|NZ_CP023603.1_1217585-1217606|NZ_CP023603.1_674778-674760|NZ_CP023603.1_840481-840499|NZ_CP023603.1_1213456-1213474|NZ_CP023603.1_1217558-1217576|NZ_CP023603.1_1217630-1217648|NZ_CP023603.1_1630642-1630624|NZ_CP023603.1_1633468-1633450|NZ_CP023603.1_1636863-1636845|NZ_CP023603.1_1990755-1990737|NZ_CP023603.1_2061477-2061459|NZ_CP023603.1_2061924-2061906|NZ_CP023603.1_2062023-2062005|NZ_CP023603.1_2802029-2802011|NZ_CP023603.1_2805557-2805539|NZ_CP023603.1_150189-150207|NZ_CP023603.1_333787-333769|NZ_CP023603.1_335206-335188|NZ_CP023603.1_335659-335641|NZ_CP023603.1_335710-335692|NZ_CP023603.1_335719-335701|NZ_CP023603.1_338008-337990|NZ_CP023603.1_338404-338386|NZ_CP023603.1_338433-338451|NZ_CP023603.1_338527-338509|NZ_CP023603.1_363061-363043|NZ_CP023603.1_443435-443417|NZ_CP023603.1_546779-546761|NZ_CP023603.1_623969-623987|NZ_CP023603.1_624191-624209|NZ_CP023603.1_673944-673926|NZ_CP023603.1_840202-840220|NZ_CP023603.1_1090959-1090977|NZ_CP023603.1_1091607-1091625|NZ_CP023603.1_1095665-1095647|NZ_CP023603.1_1212985-1213003|NZ_CP023603.1_1213375-1213393|NZ_CP023603.1_1217978-1217996|NZ_CP023603.1_1489154-1489136|NZ_CP023603.1_1618606-1618588|NZ_CP023603.1_1619059-1619041|NZ_CP023603.1_1635981-1635963|NZ_CP023603.1_1635990-1635972|NZ_CP023603.1_1864255-1864237|NZ_CP023603.1_1864774-1864756|NZ_CP023603.1_1990029-1990011|NZ_CP023603.1_2001389-2001407|NZ_CP023603.1_2088747-2088729|NZ_CP023603.1_2303436-2303418|NZ_CP023603.1_2356888-2356870|NZ_CP023603.1_2419542-2419560|NZ_CP023603.1_2423629-2423611|NZ_CP023603.1_2569122-2569104|NZ_CP023603.1_2693420-2693438|NZ_CP023603.1_2795344-2795326|NZ_CP023603.1_2795926-2795908|NZ_CP023603.1_3054516-3054534|NZ_CP023603.1_3054615-3054633|NZ_CP023603.1_3705421-3705439|NZ_CP023603.1_3737397-3737379|NZ_CP023603.1_3738021-3738003|NZ_CP023603.1_3738264-3738246|NZ_CP023603.1_3738397-3738379|NZ_CP023603.1_3802261-3802279|NZ_CP023603.1_3802444-3802462|NZ_CP023603.1_3802612-3802630|NZ_CP023603.1_3930423-3930441|NZ_CP023603.1_3932153-3932171|NZ_CP023603.1_3940660-3940678|NZ_CP023603.1_4031638-4031620|NZ_CP023603.1_4094164-4094182	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023603.1_1207362_1207629_+,NA|61aa|down_3|NZ_CP023603.1_1215165_1215348_+,NA|35aa|down_4|NZ_CP023603.1_1215457_1215562_+	NA|465aa|up_9|NZ_CP023603.1_1201696_1203091_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023603.1_1203292_1204015_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023603.1_1204046_1205213_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023603.1_1205283_1205778_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023603.1_1205963_1206398_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023603.1_1206499_1207366_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023603.1_1207362_1207629_+	NA	NA|674aa|up_2|NZ_CP023603.1_1207615_1209637_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023603.1_1209735_1210464_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023603.1_1210574_1211363_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023603.1_1213980_1214301_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023603.1_1214453_1214888_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023603.1_1214986_1215154_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023603.1_1215165_1215348_+	NA	NA|35aa|down_4|NZ_CP023603.1_1215457_1215562_+	NA	NA|152aa|down_5|NZ_CP023603.1_1215539_1215995_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023603.1_1216409_1218971_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023603.1_1219188_1220127_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023603.1_1220514_1221795_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023603.1_1221899_1222727_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	7	1572129-1573201	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023603.1_1563892_1564210_+,NA	NA|103aa|up_9|NZ_CP023603.1_1561407_1561716_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023603.1_1561712_1563332_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023603.1_1563892_1564210_+	NA	NA|209aa|up_6|NZ_CP023603.1_1564344_1564971_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023603.1_1565036_1565369_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023603.1_1565384_1566641_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023603.1_1566768_1567980_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023603.1_1568052_1569531_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023603.1_1569527_1570913_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023603.1_1570990_1572025_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023603.1_1574055_1574457_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023603.1_1574453_1574711_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023603.1_1574793_1575753_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023603.1_1575777_1576740_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023603.1_1576873_1577476_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023603.1_1577556_1579524_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023603.1_1579541_1580366_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023603.1_1580534_1581017_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023603.1_1581088_1581913_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023603.1_1582109_1583048_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	8	1636559-1636785	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023603.1_1623067_1623181_-,NA|137aa|up_7|NZ_CP023603.1_1623230_1623641_-,NA|288aa|down_2|NZ_CP023603.1_1640623_1641487_+	NA|162aa|up_9|NZ_CP023603.1_1622150_1622636_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023603.1_1623067_1623181_-	NA	NA|137aa|up_7|NZ_CP023603.1_1623230_1623641_-	NA	NA|248aa|up_6|NZ_CP023603.1_1623657_1624401_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023603.1_1624397_1625309_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023603.1_1625361_1626906_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023603.1_1626902_1628024_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023603.1_1628040_1630143_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP023603.1_1630581_1634571_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023603.1_1634972_1635899_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023603.1_1638324_1639590_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023603.1_1639617_1640604_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023603.1_1640623_1641487_+	NA	NA|311aa|down_3|NZ_CP023603.1_1641436_1642369_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023603.1_1642480_1643266_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023603.1_1643262_1644204_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023603.1_1644306_1646082_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023603.1_1646129_1646936_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023603.1_1646932_1649473_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023603.1_1649469_1650663_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	9	2088219-2088473	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088300-2088317|2088300-2088317|2088390-2088407	NZ_CP023603.1_401086-401069|NZ_CP023603.1_607424-607407|NZ_CP023603.1_3450122-3450105	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023603.1_2087578_2087842_-,NA	NA|165aa|up_9|NZ_CP023603.1_2073872_2074367_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023603.1_2074770_2075448_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023603.1_2075806_2078632_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023603.1_2078858_2079719_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023603.1_2079759_2080626_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023603.1_2080630_2082517_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023603.1_2082532_2084566_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023603.1_2084685_2086911_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023603.1_2087186_2087582_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023603.1_2087578_2087842_-	NA	NA|346aa|down_0|NZ_CP023603.1_2089610_2090648_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023603.1_2090647_2092015_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023603.1_2092188_2093625_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023603.1_2093660_2095112_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023603.1_2095141_2096092_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023603.1_2096106_2096523_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023603.1_2096800_2097223_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023603.1_2097271_2097574_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023603.1_2097570_2097885_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023603.1_2097884_2099618_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	10	2163300-2163404	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023603.1_2159844_2160252_-,NA|127aa|down_6|NZ_CP023603.1_2176473_2176854_-	NA|216aa|up_9|NZ_CP023603.1_2153158_2153806_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023603.1_2153812_2156035_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023603.1_2156072_2156516_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023603.1_2156629_2157223_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023603.1_2157305_2157911_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023603.1_2158010_2159015_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023603.1_2159114_2159867_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023603.1_2159844_2160252_-	NA	NA|368aa|up_1|NZ_CP023603.1_2160386_2161490_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023603.1_2161489_2162686_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023603.1_2167572_2170536_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023603.1_2170984_2171449_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023603.1_2171546_2172410_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023603.1_2172447_2173719_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023603.1_2173990_2175106_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023603.1_2175096_2176437_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023603.1_2176473_2176854_-	NA	NA|621aa|down_7|NZ_CP023603.1_2177010_2178873_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023603.1_2178880_2179360_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023603.1_2179596_2180370_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	11	2168738-2168957	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023603.1_2159844_2160252_-,NA|127aa|down_5|NZ_CP023603.1_2176473_2176854_-	NA|741aa|up_9|NZ_CP023603.1_2153812_2156035_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023603.1_2156072_2156516_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023603.1_2156629_2157223_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023603.1_2157305_2157911_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023603.1_2158010_2159015_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023603.1_2159114_2159867_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023603.1_2159844_2160252_-	NA	NA|368aa|up_2|NZ_CP023603.1_2160386_2161490_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023603.1_2161489_2162686_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023603.1_2162855_2167235_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023603.1_2170984_2171449_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023603.1_2171546_2172410_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023603.1_2172447_2173719_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023603.1_2173990_2175106_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023603.1_2175096_2176437_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023603.1_2176473_2176854_-	NA	NA|621aa|down_6|NZ_CP023603.1_2177010_2178873_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023603.1_2178880_2179360_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023603.1_2179596_2180370_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023603.1_2180373_2181141_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	12	3119098-3120452	3,8,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,17,18	18	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023603.1_3112377_3112632_-,NA|135aa|up_7|NZ_CP023603.1_3112779_3113184_+,NA|64aa|up_6|NZ_CP023603.1_3113180_3113372_+,NA|86aa|up_4|NZ_CP023603.1_3114958_3115216_+,NA|104aa|up_3|NZ_CP023603.1_3115320_3115632_+,NA|203aa|up_2|NZ_CP023603.1_3116051_3116660_+,NA	NA|92aa|up_9|NZ_CP023603.1_3111926_3112202_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023603.1_3112377_3112632_-	NA	NA|135aa|up_7|NZ_CP023603.1_3112779_3113184_+	NA	NA|64aa|up_6|NZ_CP023603.1_3113180_3113372_+	NA	NA|385aa|up_5|NZ_CP023603.1_3113570_3114725_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023603.1_3114958_3115216_+	NA	NA|104aa|up_3|NZ_CP023603.1_3115320_3115632_+	NA	NA|203aa|up_2|NZ_CP023603.1_3116051_3116660_+	NA	NA|470aa|up_1|NZ_CP023603.1_3116730_3118140_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023603.1_3118136_3118949_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023603.1_3120478_3121740_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023603.1_3123537_3123879_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023603.1_3123879_3124896_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023603.1_3124908_3126057_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023603.1_3126152_3127280_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023603.1_3127276_3128185_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023603.1_3128165_3128876_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023603.1_3128885_3129260_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023603.1_3129256_3131695_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023603.1_3131691_3132414_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	13	3121775-3123489	9,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023603.1_3112377_3112632_-,NA|135aa|up_8|NZ_CP023603.1_3112779_3113184_+,NA|64aa|up_7|NZ_CP023603.1_3113180_3113372_+,NA|86aa|up_5|NZ_CP023603.1_3114958_3115216_+,NA|104aa|up_4|NZ_CP023603.1_3115320_3115632_+,NA|203aa|up_3|NZ_CP023603.1_3116051_3116660_+,NA	NA|85aa|up_9|NZ_CP023603.1_3112377_3112632_-	NA	NA|135aa|up_8|NZ_CP023603.1_3112779_3113184_+	NA	NA|64aa|up_7|NZ_CP023603.1_3113180_3113372_+	NA	NA|385aa|up_6|NZ_CP023603.1_3113570_3114725_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023603.1_3114958_3115216_+	NA	NA|104aa|up_4|NZ_CP023603.1_3115320_3115632_+	NA	NA|203aa|up_3|NZ_CP023603.1_3116051_3116660_+	NA	NA|470aa|up_2|NZ_CP023603.1_3116730_3118140_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023603.1_3118136_3118949_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023603.1_3120478_3121740_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023603.1_3123537_3123879_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023603.1_3123879_3124896_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023603.1_3124908_3126057_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023603.1_3126152_3127280_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023603.1_3127276_3128185_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023603.1_3128165_3128876_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023603.1_3128885_3129260_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023603.1_3129256_3131695_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023603.1_3131691_3132414_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023603.1_3132813_3133359_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	14	3740591-3741132	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023603.1_3755233_3755521_-,NA|87aa|down_9|NZ_CP023603.1_3768642_3768903_-	NA|384aa|up_9|NZ_CP023603.1_3718501_3719653_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NZ_CP023603.1_3719843_3720689_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NZ_CP023603.1_3721163_3721604_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NZ_CP023603.1_3721637_3722507_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NZ_CP023603.1_3722527_3723538_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_4|NZ_CP023603.1_3723822_3724455_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_3|NZ_CP023603.1_3724521_3725751_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NZ_CP023603.1_3726033_3727383_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NZ_CP023603.1_3727394_3728534_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NZ_CP023603.1_3728530_3729262_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|down_0|NZ_CP023603.1_3743103_3743361_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023603.1_3743616_3753090_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023603.1_3753715_3754162_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023603.1_3754198_3754939_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023603.1_3755233_3755521_-	NA	NA|3717aa|down_5|NZ_CP023603.1_3755857_3767008_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023603.1_3767252_3768047_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023603.1_3768128_3768500_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023603.1_3768397_3768616_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023603.1_3768642_3768903_-	NA
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	15	3948268-3950019	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948859-3948894|3948859-3948894|3948859-3948894|3948859-3948894|3948859-3948894|3949750-3949776|3949750-3949776|3949750-3949776|3949750-3949776	NZ_CP023603.1_3946975-3947010|NZ_CP023603.1_3947317-3947352|NZ_CP023603.1_3947908-3947943|NZ_CP023603.1_3948259-3948294|NZ_CP023603.1_3932708-3932743|NZ_CP023603.1_362001-362027|NZ_CP023603.1_3941161-3941187|NZ_CP023603.1_3941497-3941523|NZ_CP023603.1_3941843-3941869	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023603.1_3953334_3954174_+	NA|318aa|up_9|NZ_CP023603.1_3920990_3921944_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023603.1_3921968_3922160_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023603.1_3922374_3923577_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023603.1_3923601_3924723_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023603.1_3924793_3926302_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023603.1_3926472_3930618_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023603.1_3930908_3936614_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023603.1_3936780_3938328_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023603.1_3938324_3939161_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023603.1_3944995_3945652_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023603.1_3950727_3952374_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023603.1_3952447_3953239_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023603.1_3953334_3954174_+	NA	NA|399aa|down_3|NZ_CP023603.1_3954228_3955425_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023603.1_3955453_3956164_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023603.1_3956228_3957272_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023603.1_3957424_3958336_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023603.1_3958351_3959416_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023603.1_3959432_3960617_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023603.1_3960658_3961690_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	16	3998439-3998598	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	1	1	3998508-3998528	NZ_CP023603.1_430193-430173	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023603.1_4008070_4008337_-,NA|57aa|down_9|NZ_CP023603.1_4008367_4008538_-	NA|305aa|up_9|NZ_CP023603.1_3987285_3988200_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023603.1_3988222_3989002_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023603.1_3989056_3989800_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023603.1_3989799_3990678_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023603.1_3990674_3991427_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023603.1_3991524_3992592_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023603.1_3992588_3994646_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023603.1_3994733_3995603_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023603.1_3995707_3996868_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023603.1_3996932_3997535_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023603.1_3999550_4000339_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023603.1_4000335_4001493_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023603.1_4001540_4003064_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023603.1_4003064_4004198_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023603.1_4004194_4005154_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023603.1_4005150_4006107_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023603.1_4006103_4007270_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023603.1_4007234_4008086_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023603.1_4008070_4008337_-	NA	NA|57aa|down_9|NZ_CP023603.1_4008367_4008538_-	NA
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	17	3998667-3999044	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	3	62	3998691-3998711|3998691-3998711|3998691-3998711|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998736-3998756|3998781-3998801|3998781-3998801|3998781-3998801|3998781-3998801	NZ_CP023603.1_427121-427101|NZ_CP023603.1_427151-427131|NZ_CP023603.1_431450-431430|NZ_CP023603.1_2922913-2922933|NZ_CP023603.1_132299-132319|NZ_CP023603.1_336663-336643|NZ_CP023603.1_528243-528223|NZ_CP023603.1_673148-673128|NZ_CP023603.1_673157-673137|NZ_CP023603.1_673208-673188|NZ_CP023603.1_673217-673197|NZ_CP023603.1_673328-673308|NZ_CP023603.1_674051-674031|NZ_CP023603.1_836922-836942|NZ_CP023603.1_837930-837950|NZ_CP023603.1_839378-839398|NZ_CP023603.1_840713-840733|NZ_CP023603.1_928021-928001|NZ_CP023603.1_968631-968611|NZ_CP023603.1_1091986-1092006|NZ_CP023603.1_1188523-1188503|NZ_CP023603.1_1188577-1188557|NZ_CP023603.1_1385253-1385233|NZ_CP023603.1_1618371-1618351|NZ_CP023603.1_1633128-1633108|NZ_CP023603.1_1991180-1991160|NZ_CP023603.1_2088572-2088552|NZ_CP023603.1_2089043-2089023|NZ_CP023603.1_2803396-2803376|NZ_CP023603.1_2923015-2923035|NZ_CP023603.1_2960191-2960171|NZ_CP023603.1_3737948-3737928|NZ_CP023603.1_3738537-3738517|NZ_CP023603.1_3738555-3738535|NZ_CP023603.1_3738606-3738586|NZ_CP023603.1_3738657-3738637|NZ_CP023603.1_3738801-3738781|NZ_CP023603.1_3739731-3739711|NZ_CP023603.1_3739908-3739888|NZ_CP023603.1_3740484-3740464|NZ_CP023603.1_3779813-3779833|NZ_CP023603.1_3927097-3927117|NZ_CP023603.1_3927193-3927213|NZ_CP023603.1_3928189-3928209|NZ_CP023603.1_3928198-3928218|NZ_CP023603.1_3928207-3928227|NZ_CP023603.1_3928216-3928236|NZ_CP023603.1_3928225-3928245|NZ_CP023603.1_3928978-3928998|NZ_CP023603.1_3929173-3929193|NZ_CP023603.1_3936288-3936308|NZ_CP023603.1_3941138-3941158|NZ_CP023603.1_3941474-3941494|NZ_CP023603.1_3941820-3941840|NZ_CP023603.1_3942462-3942482|NZ_CP023603.1_3943683-3943703|NZ_CP023603.1_3943800-3943820|NZ_CP023603.1_3944247-3944267|NZ_CP023603.1_1262767-1262747|NZ_CP023603.1_427121-427101|NZ_CP023603.1_427151-427131|NZ_CP023603.1_431450-431430	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023603.1_4008070_4008337_-,NA|57aa|down_9|NZ_CP023603.1_4008367_4008538_-	NA|305aa|up_9|NZ_CP023603.1_3987285_3988200_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023603.1_3988222_3989002_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023603.1_3989056_3989800_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023603.1_3989799_3990678_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023603.1_3990674_3991427_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023603.1_3991524_3992592_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023603.1_3992588_3994646_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023603.1_3994733_3995603_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023603.1_3995707_3996868_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023603.1_3996932_3997535_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023603.1_3999550_4000339_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023603.1_4000335_4001493_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023603.1_4001540_4003064_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023603.1_4003064_4004198_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023603.1_4004194_4005154_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023603.1_4005150_4006107_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023603.1_4006103_4007270_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023603.1_4007234_4008086_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023603.1_4008070_4008337_-	NA	NA|57aa|down_9|NZ_CP023603.1_4008367_4008538_-	NA
GCF_002447475.1_ASM244747v1	NZ_CP023603	Mycobacterium tuberculosis strain LE63 chromosome, complete genome	18	4110582-4110670	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023603.1_4101168_4101939_-,NA|119aa|up_3|NZ_CP023603.1_4107073_4107430_+,NA|52aa|up_2|NZ_CP023603.1_4107529_4107685_+,NA|233aa|up_0|NZ_CP023603.1_4109686_4110385_-,NA|126aa|down_5|NZ_CP023603.1_4115901_4116279_+	NA|288aa|up_9|NZ_CP023603.1_4099550_4100414_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023603.1_4101168_4101939_-	NA	NA|549aa|up_7|NZ_CP023603.1_4101935_4103582_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023603.1_4103578_4104442_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023603.1_4104434_4105361_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023603.1_4105362_4106988_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023603.1_4107073_4107430_+	NA	NA|52aa|up_2|NZ_CP023603.1_4107529_4107685_+	NA	NA|652aa|up_1|NZ_CP023603.1_4107695_4109651_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023603.1_4109686_4110385_-	NA	NA|173aa|down_0|NZ_CP023603.1_4110730_4111249_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023603.1_4111249_4112233_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023603.1_4112225_4113419_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|228aa|down_3|NZ_CP023603.1_4114373_4115057_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_4|NZ_CP023603.1_4115056_4115794_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_5|NZ_CP023603.1_4115901_4116279_+	NA	NA|225aa|down_6|NZ_CP023603.1_4116377_4117052_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_7|NZ_CP023603.1_4117157_4117952_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_8|NZ_CP023603.1_4117958_4118414_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|54aa|down_9|NZ_CP023603.1_4118429_4118591_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)
