The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023601	Mycobacterium tuberculosis strain CSV9577 chromosome, complete genome	4411230	2941023	2976389	4411230	protease,capsid,tRNA,terminase,integrase,transposase,head	Tupanvirus(11.11%)	41	2969824:2969851	2980806:2980833
WP_003413486.1|2941023_2943102_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943210_2943438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943434_2944820_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945164_2945665_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945681_2946122_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946268_2946946_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946930_2947284_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947296_2947722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947718_2948393_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948470_2949292_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949427_2950321_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950323_2951142_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951156_2952338_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952396_2952828_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953341_2954583_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954892_2955255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955601_2956726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956727_2957267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957406_2958705_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958743_2959025_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959169_2959655_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959681_2959939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959939_2962276_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962304_2962547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962547_2963225_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963420_2964077_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964239_2964686_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964860_2965193_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965312_2965672_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965773_2966232_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966367_2966748_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966744_2968241_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968430_2968667_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968739_2968913_+	hypothetical protein	NA	NA	NA	NA	NA
2969824:2969851	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969957_2970389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970385_2971384_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971397_2971862_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971994_2973255_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973629_2975069_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975076_2975610_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975762_2976389_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980806:2980833	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023601	Mycobacterium tuberculosis strain CSV9577 chromosome, complete genome	4411230	3710204	3796124	4411230	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710204_3711465_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711520_3711682_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711703_3713233_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713165_3714104_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714112_3715480_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715548_3716766_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716861_3718370_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718366_3719518_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719708_3720554_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721028_3721469_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721502_3722372_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722392_3723403_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723687_3724320_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724386_3725616_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725898_3727248_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727259_3728399_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728395_3729127_+	methyltransferase	NA	NA	NA	NA	NA
WP_023637497.1|3729135_3736707_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742960_3743218_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_096877937.1|3743473_3752947_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753572_3754019_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754055_3754796_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755090_3755378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096877938.1|3755714_3766865_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767108_3767903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767984_3768356_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768253_3768472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768498_3768759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768873_3769263_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769276_3769570_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769566_3770412_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770535_3770811_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770807_3771065_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771106_3772297_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772413_3772782_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772778_3773330_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773336_3773918_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773898_3774267_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774244_3774637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774633_3777264_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777499_3777964_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778330_3780097_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780097_3780742_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780740_3781175_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781263_3784503_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784694_3786035_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786076_3787252_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787305_3787410_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787488_3788130_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788130_3788379_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788383_3789811_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789918_3790572_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790610_3792116_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792120_3793011_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793019_3794630_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075886355.1|3794574_3794811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087902221.1|3794862_3796124_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
