assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	1	338069-338291	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023599.1_333138_333321_-,NA	NA|398aa|up_9|NZ_CP023599.1_323316_324510_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023599.1_324545_326228_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023599.1_326244_328440_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023599.1_328553_329687_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023599.1_329683_330304_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023599.1_330400_330982_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023599.1_330911_331637_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023599.1_331726_332647_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023599.1_332686_333115_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023599.1_333138_333321_-	NA	NA|537aa|down_0|NZ_CP023599.1_339328_340939_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023599.1_340962_341871_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023599.1_342094_343990_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023599.1_343986_345603_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023599.1_345599_349592_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023599.1_349588_349897_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023599.1_349899_351441_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023599.1_351489_351783_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023599.1_351812_352103_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023599.1_352113_353001_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	2	366428-367126	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366716-366757|366791-366823	NZ_CP023599.1_374732-374773|NZ_CP023599.1_373547-373579	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023599.1_363440_363743_+,NA|161aa|down_1|NZ_CP023599.1_376521_377004_-,NA|410aa|down_5|NZ_CP023599.1_379120_380350_+	NA|262aa|up_9|NZ_CP023599.1_358135_358921_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023599.1_358909_359713_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023599.1_359722_361120_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023599.1_361298_363074_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023599.1_363216_363444_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023599.1_363440_363743_+	NA	NA|74aa|up_3|NZ_CP023599.1_363790_364012_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023599.1_364008_364434_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023599.1_364569_365202_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023599.1_365198_366107_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023599.1_375862_376534_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023599.1_376521_377004_-	NA	NA|239aa|down_2|NZ_CP023599.1_377061_377778_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023599.1_377879_378536_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023599.1_378605_379097_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023599.1_379120_380350_+	NA	NA|621aa|down_6|NZ_CP023599.1_380504_382367_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023599.1_382438_382825_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023599.1_382827_383490_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023599.1_383550_384435_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	3	631198-631335	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631216-631233|631216-631233|631300-631317	NZ_CP023599.1_22466-22483|NZ_CP023599.1_1411922-1411939|NZ_CP023599.1_973123-973140	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023599.1_622036_622198_-,NA|478aa|up_0|NZ_CP023599.1_628213_629647_-,NA|450aa|down_2|NZ_CP023599.1_632970_634320_-,NA|93aa|down_5|NZ_CP023599.1_635850_636129_-	NA|325aa|up_9|NZ_CP023599.1_619806_620781_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023599.1_620822_622040_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023599.1_622036_622198_-	NA	NA|106aa|up_6|NZ_CP023599.1_622244_622562_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023599.1_622708_624493_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023599.1_624388_625396_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023599.1_625477_626356_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023599.1_626372_627167_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023599.1_627163_628204_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023599.1_628213_629647_-	NA	NA|211aa|down_0|NZ_CP023599.1_631658_632291_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023599.1_632287_632950_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023599.1_632970_634320_-	NA	NA|381aa|down_3|NZ_CP023599.1_634331_635474_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023599.1_635488_635791_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023599.1_635850_636129_-	NA	NA|418aa|down_6|NZ_CP023599.1_636125_637379_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023599.1_637498_637885_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023599.1_637947_638832_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023599.1_638927_639830_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	4	691936-692012	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023599.1_677831_678239_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023599.1_678298_678985_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023599.1_679138_681772_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023599.1_681794_684182_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023599.1_684319_685042_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023599.1_685038_685836_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023599.1_685837_686725_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023599.1_686730_687945_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP023599.1_687941_688973_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP023599.1_688969_690415_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023599.1_693147_694698_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023599.1_694749_695142_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023599.1_695138_695396_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023599.1_695578_696814_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023599.1_697064_697478_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023599.1_697474_697711_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023599.1_697814_698321_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023599.1_698434_698905_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023599.1_698948_699710_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023599.1_699766_700078_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	5	926494-927441	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927277-927312|927277-927312|927277-927312	NZ_CP023599.1_675038-675003|NZ_CP023599.1_1213602-1213637|NZ_CP023599.1_2423549-2423514	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023599.1_931451_932003_-,NA|81aa|down_8|NZ_CP023599.1_937466_937709_+	NA|685aa|up_9|NZ_CP023599.1_914133_916188_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|389aa|up_8|NZ_CP023599.1_916353_917520_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023599.1_917607_918624_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023599.1_918785_919427_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023599.1_919507_920563_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023599.1_920614_921007_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023599.1_921064_921487_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023599.1_921448_921739_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023599.1_921843_922749_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023599.1_922767_923583_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP023599.1_927710_930359_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023599.1_930826_931471_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023599.1_931451_932003_-	NA	NA|241aa|down_3|NZ_CP023599.1_932083_932806_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023599.1_932876_933905_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023599.1_934593_935364_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023599.1_935450_936263_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023599.1_936330_937191_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023599.1_937466_937709_+	NA	NA|431aa|down_9|NZ_CP023599.1_937985_939278_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	6	1572012-1573084	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1572212-1572233	NZ_CP023599.1_1211916-1211895	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023599.1_1563775_1564093_+,NA	NA|103aa|up_9|NZ_CP023599.1_1561290_1561599_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023599.1_1561595_1563215_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023599.1_1563775_1564093_+	NA	NA|209aa|up_6|NZ_CP023599.1_1564227_1564854_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023599.1_1564919_1565252_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023599.1_1565267_1566524_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023599.1_1566651_1567863_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023599.1_1567935_1569414_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023599.1_1569410_1570796_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023599.1_1570873_1571908_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023599.1_1573938_1574340_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023599.1_1574336_1574594_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023599.1_1574676_1575636_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023599.1_1575660_1576623_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023599.1_1576756_1577359_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023599.1_1577439_1579407_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023599.1_1579424_1580249_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023599.1_1580417_1580900_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023599.1_1580971_1581796_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023599.1_1581992_1582931_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	7	1618529-1618693	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCCGCGCCGCCGTTGCCGCCGTCGCCGCCA	33	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|46aa|up_7|NZ_CP023599.1_1612082_1612220_+,NA|76aa|up_2|NZ_CP023599.1_1616191_1616419_-,NA|38aa|down_2|NZ_CP023599.1_1622932_1623046_-,NA|137aa|down_3|NZ_CP023599.1_1623095_1623506_-	NA|474aa|up_9|NZ_CP023599.1_1609675_1611097_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_8|NZ_CP023599.1_1611260_1612076_+	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|46aa|up_7|NZ_CP023599.1_1612082_1612220_+	NA	NA|203aa|up_6|NZ_CP023599.1_1612168_1612777_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|340aa|up_5|NZ_CP023599.1_1613133_1614153_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|413aa|up_4|NZ_CP023599.1_1614155_1615394_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|up_3|NZ_CP023599.1_1615390_1616176_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|76aa|up_2|NZ_CP023599.1_1616191_1616419_-	NA	NA|142aa|up_1|NZ_CP023599.1_1616787_1617213_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|78aa|up_0|NZ_CP023599.1_1617663_1617897_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|767aa|down_0|NZ_CP023599.1_1619599_1621900_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|down_1|NZ_CP023599.1_1622015_1622501_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|down_2|NZ_CP023599.1_1622932_1623046_-	NA	NA|137aa|down_3|NZ_CP023599.1_1623095_1623506_-	NA	NA|248aa|down_4|NZ_CP023599.1_1623522_1624266_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|305aa|down_5|NZ_CP023599.1_1624262_1625177_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|down_6|NZ_CP023599.1_1625229_1626774_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_7|NZ_CP023599.1_1626770_1627892_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|down_8|NZ_CP023599.1_1627908_1630011_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_9|NZ_CP023599.1_1634821_1635748_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	8	2088044-2088298	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088125-2088142|2088125-2088142|2088215-2088232	NZ_CP023599.1_401028-401011|NZ_CP023599.1_607354-607337|NZ_CP023599.1_3449892-3449875	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023599.1_2087403_2087667_-,NA	NA|165aa|up_9|NZ_CP023599.1_2073697_2074192_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023599.1_2074595_2075273_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023599.1_2075631_2078457_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023599.1_2078683_2079544_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023599.1_2079584_2080451_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023599.1_2080455_2082342_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023599.1_2082357_2084391_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023599.1_2084510_2086736_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023599.1_2087011_2087407_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023599.1_2087403_2087667_-	NA	NA|346aa|down_0|NZ_CP023599.1_2089435_2090473_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023599.1_2090472_2091840_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023599.1_2092013_2093450_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023599.1_2093485_2094937_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023599.1_2094966_2095917_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023599.1_2095931_2096348_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023599.1_2096625_2097048_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP023599.1_2097096_2097399_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023599.1_2097395_2097710_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023599.1_2097709_2099443_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	9	2163123-2163227	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023599.1_2152184_2152655_-,NA|136aa|up_1|NZ_CP023599.1_2159666_2160074_-,NA|127aa|down_6|NZ_CP023599.1_2176296_2176677_-	NA|157aa|up_9|NZ_CP023599.1_2152184_2152655_-	NA	NA|155aa|up_8|NZ_CP023599.1_2152994_2153459_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023599.1_2153634_2155857_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023599.1_2155894_2156338_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023599.1_2156451_2157045_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023599.1_2157127_2157733_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023599.1_2157832_2158837_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023599.1_2158936_2159689_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023599.1_2159666_2160074_-	NA	NA|767aa|up_0|NZ_CP023599.1_2160208_2162509_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023599.1_2167395_2170359_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023599.1_2170807_2171272_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023599.1_2171369_2172233_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023599.1_2172270_2173542_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023599.1_2173813_2174929_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023599.1_2174919_2176260_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023599.1_2176296_2176677_-	NA	NA|621aa|down_7|NZ_CP023599.1_2176833_2178696_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023599.1_2178703_2179183_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023599.1_2179419_2180193_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	10	2168561-2168780	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023599.1_2159666_2160074_-,NA|127aa|down_5|NZ_CP023599.1_2176296_2176677_-	NA|155aa|up_9|NZ_CP023599.1_2152994_2153459_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023599.1_2153634_2155857_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023599.1_2155894_2156338_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023599.1_2156451_2157045_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023599.1_2157127_2157733_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023599.1_2157832_2158837_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023599.1_2158936_2159689_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023599.1_2159666_2160074_-	NA	NA|767aa|up_1|NZ_CP023599.1_2160208_2162509_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023599.1_2162678_2167058_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023599.1_2170807_2171272_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023599.1_2171369_2172233_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023599.1_2172270_2173542_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023599.1_2173813_2174929_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023599.1_2174919_2176260_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023599.1_2176296_2176677_-	NA	NA|621aa|down_6|NZ_CP023599.1_2176833_2178696_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023599.1_2178703_2179183_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023599.1_2179419_2180193_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023599.1_2180196_2180964_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	11	3118867-3120221	3,6,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023599.1_3112146_3112401_-,NA|135aa|up_7|NZ_CP023599.1_3112548_3112953_+,NA|64aa|up_6|NZ_CP023599.1_3112949_3113141_+,NA|86aa|up_4|NZ_CP023599.1_3114727_3114985_+,NA|104aa|up_3|NZ_CP023599.1_3115089_3115401_+,NA|203aa|up_2|NZ_CP023599.1_3115820_3116429_+,NA	NA|92aa|up_9|NZ_CP023599.1_3111695_3111971_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023599.1_3112146_3112401_-	NA	NA|135aa|up_7|NZ_CP023599.1_3112548_3112953_+	NA	NA|64aa|up_6|NZ_CP023599.1_3112949_3113141_+	NA	NA|385aa|up_5|NZ_CP023599.1_3113339_3114494_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023599.1_3114727_3114985_+	NA	NA|104aa|up_3|NZ_CP023599.1_3115089_3115401_+	NA	NA|203aa|up_2|NZ_CP023599.1_3115820_3116429_+	NA	NA|470aa|up_1|NZ_CP023599.1_3116499_3117909_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023599.1_3117905_3118718_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023599.1_3120247_3121509_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023599.1_3123306_3123648_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023599.1_3123648_3124665_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023599.1_3124677_3125826_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023599.1_3125921_3127049_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023599.1_3127045_3127954_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023599.1_3127934_3128645_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023599.1_3128654_3129029_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023599.1_3129025_3131464_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023599.1_3131460_3132183_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	12	3121544-3123258	7,5,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023599.1_3112146_3112401_-,NA|135aa|up_8|NZ_CP023599.1_3112548_3112953_+,NA|64aa|up_7|NZ_CP023599.1_3112949_3113141_+,NA|86aa|up_5|NZ_CP023599.1_3114727_3114985_+,NA|104aa|up_4|NZ_CP023599.1_3115089_3115401_+,NA|203aa|up_3|NZ_CP023599.1_3115820_3116429_+,NA	NA|85aa|up_9|NZ_CP023599.1_3112146_3112401_-	NA	NA|135aa|up_8|NZ_CP023599.1_3112548_3112953_+	NA	NA|64aa|up_7|NZ_CP023599.1_3112949_3113141_+	NA	NA|385aa|up_6|NZ_CP023599.1_3113339_3114494_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023599.1_3114727_3114985_+	NA	NA|104aa|up_4|NZ_CP023599.1_3115089_3115401_+	NA	NA|203aa|up_3|NZ_CP023599.1_3115820_3116429_+	NA	NA|470aa|up_2|NZ_CP023599.1_3116499_3117909_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023599.1_3117905_3118718_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023599.1_3120247_3121509_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023599.1_3123306_3123648_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023599.1_3123648_3124665_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023599.1_3124677_3125826_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023599.1_3125921_3127049_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023599.1_3127045_3127954_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023599.1_3127934_3128645_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023599.1_3128654_3129029_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023599.1_3129025_3131464_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023599.1_3131460_3132183_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023599.1_3132582_3133128_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	13	3740324-3741093	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTNNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023599.1_3754966_3755254_-,NA|87aa|down_8|NZ_CP023599.1_3768373_3768634_-	NA|282aa|up_9|NZ_CP023599.1_3719612_3720458_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023599.1_3720932_3721373_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023599.1_3721406_3722276_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023599.1_3722296_3723307_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023599.1_3723591_3724224_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023599.1_3724290_3725520_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023599.1_3725802_3727152_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023599.1_3727163_3728303_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023599.1_3728299_3729031_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023599.1_3729039_3736611_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023599.1_3742836_3743094_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023599.1_3743349_3752823_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023599.1_3753448_3753895_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023599.1_3753931_3754672_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023599.1_3754966_3755254_-	NA	NA|265aa|down_5|NZ_CP023599.1_3766983_3767778_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NZ_CP023599.1_3767859_3768231_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_7|NZ_CP023599.1_3768128_3768347_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NZ_CP023599.1_3768373_3768634_-	NA	NA|130aa|down_9|NZ_CP023599.1_3768748_3769138_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	14	3947648-3949625	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CNNCGGCGGNNCCGGCGGCNNCGGCGGC	28	3	8	3947676-3947734|3947676-3947734|3947676-3947734|3947763-3947842|3947763-3947842|3948537-3948580|3948537-3948580|3948537-3948580	NZ_CP023599.1_3946734-3946792|NZ_CP023599.1_3947085-3947143|NZ_CP023599.1_3947436-3947494|NZ_CP023599.1_3946821-3946900|NZ_CP023599.1_3947172-3947251|NZ_CP023599.1_3946653-3946696|NZ_CP023599.1_3946995-3947038|NZ_CP023599.1_3947586-3947629	NA	23	23	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023599.1_3953020_3953860_+	NA|318aa|up_9|NZ_CP023599.1_3920704_3921658_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023599.1_3921682_3921874_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023599.1_3922088_3923291_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023599.1_3923315_3924437_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023599.1_3924507_3926016_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1385aa|up_4|NZ_CP023599.1_3926186_3930341_+	pfam00934, PE, PE family	NA|1902aa|up_3|NZ_CP023599.1_3930631_3936337_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023599.1_3936503_3938051_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023599.1_3938047_3938884_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023599.1_3944681_3945338_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023599.1_3950413_3952060_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023599.1_3952133_3952925_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023599.1_3953020_3953860_+	NA	NA|399aa|down_3|NZ_CP023599.1_3953914_3955111_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023599.1_3955139_3955850_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023599.1_3955914_3956958_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023599.1_3957110_3958022_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023599.1_3958037_3959102_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023599.1_3959118_3960303_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023599.1_3960344_3961376_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447395.1_ASM244739v1	NZ_CP023599	Mycobacterium tuberculosis strain CSV383 chromosome, complete genome	15	4110266-4110354	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023599.1_4100852_4101623_-,NA|119aa|up_3|NZ_CP023599.1_4106757_4107114_+,NA|52aa|up_2|NZ_CP023599.1_4107213_4107369_+,NA|233aa|up_0|NZ_CP023599.1_4109370_4110069_-,NA|126aa|down_6|NZ_CP023599.1_4115589_4115967_+	NA|288aa|up_9|NZ_CP023599.1_4099234_4100098_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023599.1_4100852_4101623_-	NA	NA|549aa|up_7|NZ_CP023599.1_4101619_4103266_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023599.1_4103262_4104126_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023599.1_4104118_4105045_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023599.1_4105046_4106672_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023599.1_4106757_4107114_+	NA	NA|52aa|up_2|NZ_CP023599.1_4107213_4107369_+	NA	NA|652aa|up_1|NZ_CP023599.1_4107379_4109335_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023599.1_4109370_4110069_-	NA	NA|173aa|down_0|NZ_CP023599.1_4110414_4110933_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023599.1_4110933_4111917_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023599.1_4111909_4113103_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023599.1_4113108_4113930_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023599.1_4114061_4114745_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023599.1_4114744_4115482_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023599.1_4115589_4115967_+	NA	NA|225aa|down_7|NZ_CP023599.1_4116065_4116740_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023599.1_4116845_4117640_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023599.1_4117646_4118102_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
