assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	1	334863-335933	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNNCCG	21	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023598.1_333144_333327_-,NA	NA|398aa|up_9|NZ_CP023598.1_323322_324516_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023598.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023598.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023598.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023598.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023598.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023598.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023598.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023598.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023598.1_333144_333327_-	NA	NA|829aa|down_0|NZ_CP023598.1_336535_339022_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023598.1_339312_340923_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023598.1_340946_341855_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023598.1_342078_343974_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023598.1_343970_345587_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP023598.1_345583_349576_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023598.1_349572_349881_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023598.1_349883_351425_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023598.1_351473_351767_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023598.1_351796_352087_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	2	337671-338609	2,1	CRT,PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NNNNNNCCGCCGGCGCCGCCG,ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	21,43	1	5	338574-338591|338574-338591|338574-338591|338574-338591|338574-338591	NZ_CP023598.1_673087-673104|NZ_CP023598.1_1216956-1216939|NZ_CP023598.1_2423629-2423646|NZ_CP023598.1_3738359-3738376|NZ_CP023598.1_3739706-3739723	NA:NA	15,2	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP023598.1_333144_333327_-,NA	NA|561aa|up_9|NZ_CP023598.1_324551_326234_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP023598.1_326250_328446_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP023598.1_328559_329693_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP023598.1_329689_330310_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP023598.1_330406_330988_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP023598.1_330917_331643_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP023598.1_331732_332653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP023598.1_332692_333121_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP023598.1_333144_333327_-	NA	NA|615aa|up_0|NZ_CP023598.1_333421_335266_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|NZ_CP023598.1_339312_340923_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP023598.1_340946_341855_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP023598.1_342078_343974_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP023598.1_343970_345587_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP023598.1_345583_349576_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP023598.1_349572_349881_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP023598.1_349883_351425_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP023598.1_351473_351767_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP023598.1_351796_352087_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP023598.1_352097_352985_+	pfam14011, ESX-1_EspG, EspG family
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	3	366412-367110	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366700-366741|366775-366807	NZ_CP023598.1_374731-374772|NZ_CP023598.1_373546-373578	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023598.1_363424_363727_+,NA|161aa|down_1|NZ_CP023598.1_376520_377003_-,NA|410aa|down_5|NZ_CP023598.1_379119_380349_+	NA|262aa|up_9|NZ_CP023598.1_358119_358905_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023598.1_358893_359697_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023598.1_359706_361104_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023598.1_361282_363058_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023598.1_363200_363428_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023598.1_363424_363727_+	NA	NA|74aa|up_3|NZ_CP023598.1_363774_363996_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023598.1_363992_364418_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023598.1_364553_365186_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023598.1_365182_366091_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023598.1_375861_376533_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023598.1_376520_377003_-	NA	NA|239aa|down_2|NZ_CP023598.1_377060_377777_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023598.1_377878_378535_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023598.1_378604_379096_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023598.1_379119_380349_+	NA	NA|621aa|down_6|NZ_CP023598.1_380503_382366_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023598.1_382437_382824_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023598.1_382826_383489_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023598.1_383549_384434_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	4	691954-692030	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023598.1_677849_678257_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023598.1_678316_679003_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023598.1_679156_681790_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023598.1_681812_684200_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023598.1_684337_685060_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023598.1_685056_685854_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023598.1_685855_686743_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023598.1_686748_687963_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023598.1_688986_690432_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023598.1_690428_691865_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023598.1_693165_694716_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023598.1_694767_695160_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023598.1_695156_695414_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023598.1_695596_696832_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023598.1_697082_697496_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023598.1_697492_697729_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023598.1_697832_698339_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023598.1_698452_698923_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023598.1_698966_699728_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023598.1_699784_700096_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	5	926550-927497	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927333-927368|927333-927368|927333-927368	NZ_CP023598.1_675051-675016|NZ_CP023598.1_1213689-1213724|NZ_CP023598.1_2423736-2423701	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023598.1_931498_932050_-,NA|81aa|down_8|NZ_CP023598.1_937513_937756_+	NA|685aa|up_9|NZ_CP023598.1_914186_916241_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023598.1_916406_917576_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023598.1_917663_918680_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023598.1_918841_919483_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023598.1_919563_920619_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023598.1_920670_921063_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023598.1_921120_921543_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023598.1_921504_921795_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023598.1_921899_922805_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023598.1_922823_923639_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023598.1_927766_930406_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023598.1_930873_931518_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023598.1_931498_932050_-	NA	NA|218aa|down_3|NZ_CP023598.1_932199_932853_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023598.1_932923_933952_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023598.1_934640_935411_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023598.1_935497_936310_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023598.1_936377_937238_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023598.1_937513_937756_+	NA	NA|431aa|down_9|NZ_CP023598.1_938032_939325_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	6	964502-964753	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	964675-964730	NZ_CP023598.1_964803-964858	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP023598.1_962600_962801_+,NA	NA|158aa|up_9|NZ_CP023598.1_953177_953651_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NZ_CP023598.1_953647_954841_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NZ_CP023598.1_954997_956209_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NZ_CP023598.1_956213_958376_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|543aa|up_5|NZ_CP023598.1_958443_960072_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NZ_CP023598.1_960262_962533_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NZ_CP023598.1_962600_962801_+	NA	NA|168aa|up_2|NZ_CP023598.1_962810_963314_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NZ_CP023598.1_963310_963793_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NZ_CP023598.1_963789_964215_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NZ_CP023598.1_965903_966182_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NZ_CP023598.1_966185_967268_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NZ_CP023598.1_967264_967654_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NZ_CP023598.1_967818_968226_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|629aa|down_4|NZ_CP023598.1_968287_970174_-	pfam00934, PE, PE family	NA|651aa|down_5|NZ_CP023598.1_970434_972387_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NZ_CP023598.1_972475_973636_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NZ_CP023598.1_973735_974224_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NZ_CP023598.1_974220_975867_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NZ_CP023598.1_976004_976793_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	7	1211890-1212746	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	64	1212273-1212294|1212318-1212333|1212456-1212477|1212456-1212477|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591|1212573-1212591	NZ_CP023598.1_2960492-2960471|NZ_CP023598.1_2088585-2088570|NZ_CP023598.1_837363-837384|NZ_CP023598.1_1217584-1217605|NZ_CP023598.1_674715-674697|NZ_CP023598.1_1213416-1213434|NZ_CP023598.1_1217557-1217575|NZ_CP023598.1_1217629-1217647|NZ_CP023598.1_1630646-1630628|NZ_CP023598.1_1633472-1633454|NZ_CP023598.1_1990784-1990766|NZ_CP023598.1_2061513-2061495|NZ_CP023598.1_2061960-2061942|NZ_CP023598.1_2062059-2062041|NZ_CP023598.1_2802041-2802023|NZ_CP023598.1_2805569-2805551|NZ_CP023598.1_150165-150183|NZ_CP023598.1_333767-333749|NZ_CP023598.1_363002-362984|NZ_CP023598.1_443369-443351|NZ_CP023598.1_546713-546695|NZ_CP023598.1_623906-623924|NZ_CP023598.1_624128-624146|NZ_CP023598.1_673881-673863|NZ_CP023598.1_840146-840164|NZ_CP023598.1_1090912-1090930|NZ_CP023598.1_1091560-1091578|NZ_CP023598.1_1095619-1095601|NZ_CP023598.1_1212945-1212963|NZ_CP023598.1_1213335-1213353|NZ_CP023598.1_1217977-1217995|NZ_CP023598.1_1489154-1489136|NZ_CP023598.1_1618610-1618592|NZ_CP023598.1_1619063-1619045|NZ_CP023598.1_1635985-1635967|NZ_CP023598.1_1635994-1635976|NZ_CP023598.1_1864274-1864256|NZ_CP023598.1_1864802-1864784|NZ_CP023598.1_1990058-1990040|NZ_CP023598.1_2001420-2001438|NZ_CP023598.1_2088783-2088765|NZ_CP023598.1_2303462-2303444|NZ_CP023598.1_2356909-2356891|NZ_CP023598.1_2419562-2419580|NZ_CP023598.1_2423649-2423631|NZ_CP023598.1_2569141-2569123|NZ_CP023598.1_2693434-2693452|NZ_CP023598.1_2795356-2795338|NZ_CP023598.1_2795938-2795920|NZ_CP023598.1_3054529-3054547|NZ_CP023598.1_3054628-3054646|NZ_CP023598.1_3705449-3705467|NZ_CP023598.1_3737427-3737409|NZ_CP023598.1_3738051-3738033|NZ_CP023598.1_3738246-3738228|NZ_CP023598.1_3738379-3738361|NZ_CP023598.1_3802242-3802260|NZ_CP023598.1_3802425-3802443|NZ_CP023598.1_3802593-3802611|NZ_CP023598.1_3930405-3930423|NZ_CP023598.1_3932144-3932162|NZ_CP023598.1_3940651-3940669|NZ_CP023598.1_4031599-4031581|NZ_CP023598.1_4094125-4094143	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023598.1_1207322_1207589_+,NA|61aa|down_3|NZ_CP023598.1_1215164_1215347_+,NA|35aa|down_4|NZ_CP023598.1_1215456_1215561_+	NA|465aa|up_9|NZ_CP023598.1_1201656_1203051_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023598.1_1203252_1203975_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023598.1_1204006_1205173_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023598.1_1205243_1205738_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023598.1_1205923_1206358_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023598.1_1206459_1207326_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023598.1_1207322_1207589_+	NA	NA|674aa|up_2|NZ_CP023598.1_1207575_1209597_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023598.1_1209695_1210424_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023598.1_1210534_1211323_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023598.1_1213979_1214300_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023598.1_1214452_1214887_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023598.1_1214985_1215153_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023598.1_1215164_1215347_+	NA	NA|35aa|down_4|NZ_CP023598.1_1215456_1215561_+	NA	NA|152aa|down_5|NZ_CP023598.1_1215538_1215994_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023598.1_1216408_1218970_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023598.1_1219187_1220126_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023598.1_1220513_1221794_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023598.1_1221898_1222726_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	8	1572129-1573201	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023598.1_1563892_1564210_+,NA	NA|103aa|up_9|NZ_CP023598.1_1561407_1561716_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023598.1_1561712_1563332_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023598.1_1563892_1564210_+	NA	NA|209aa|up_6|NZ_CP023598.1_1564344_1564971_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023598.1_1565036_1565369_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023598.1_1565384_1566641_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023598.1_1566768_1567980_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023598.1_1568052_1569531_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023598.1_1569527_1570913_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023598.1_1570990_1572025_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023598.1_1574054_1574456_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023598.1_1574452_1574710_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023598.1_1574792_1575752_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023598.1_1575776_1576739_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023598.1_1576872_1577475_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023598.1_1577555_1579523_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023598.1_1579540_1580365_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023598.1_1580533_1581016_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023598.1_1581087_1581912_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023598.1_1582108_1583047_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	9	2088255-2088509	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088336-2088353|2088336-2088353|2088426-2088443	NZ_CP023598.1_401027-401010|NZ_CP023598.1_607361-607344|NZ_CP023598.1_3450143-3450126	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023598.1_2087614_2087878_-,NA	NA|165aa|up_9|NZ_CP023598.1_2073908_2074403_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023598.1_2074806_2075484_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023598.1_2075842_2078668_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023598.1_2078894_2079755_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023598.1_2079795_2080662_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023598.1_2080666_2082553_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023598.1_2082568_2084602_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023598.1_2084721_2086947_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023598.1_2087222_2087618_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023598.1_2087614_2087878_-	NA	NA|346aa|down_0|NZ_CP023598.1_2089646_2090684_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023598.1_2090683_2092051_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023598.1_2092224_2093661_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023598.1_2093696_2095148_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023598.1_2095177_2096128_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023598.1_2096142_2096559_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023598.1_2096836_2097259_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023598.1_2097307_2097610_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023598.1_2097606_2097921_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023598.1_2097920_2099654_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	10	2163348-2163452	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023598.1_2152395_2152866_-,NA|136aa|up_1|NZ_CP023598.1_2159891_2160299_-,NA|127aa|down_6|NZ_CP023598.1_2176521_2176902_-	NA|157aa|up_9|NZ_CP023598.1_2152395_2152866_-	NA	NA|216aa|up_8|NZ_CP023598.1_2153205_2153853_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023598.1_2153859_2156082_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023598.1_2156119_2156563_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023598.1_2156676_2157270_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023598.1_2157352_2157958_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023598.1_2158057_2159062_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023598.1_2159161_2159914_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023598.1_2159891_2160299_-	NA	NA|767aa|up_0|NZ_CP023598.1_2160433_2162734_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023598.1_2167620_2170584_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023598.1_2171032_2171497_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023598.1_2171594_2172458_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023598.1_2172495_2173767_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023598.1_2174038_2175154_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023598.1_2175144_2176485_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023598.1_2176521_2176902_-	NA	NA|621aa|down_7|NZ_CP023598.1_2177058_2178921_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023598.1_2178928_2179408_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023598.1_2179644_2180418_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	11	2168786-2169005	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023598.1_2159891_2160299_-,NA|127aa|down_5|NZ_CP023598.1_2176521_2176902_-	NA|216aa|up_9|NZ_CP023598.1_2153205_2153853_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023598.1_2153859_2156082_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023598.1_2156119_2156563_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023598.1_2156676_2157270_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023598.1_2157352_2157958_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023598.1_2158057_2159062_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023598.1_2159161_2159914_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023598.1_2159891_2160299_-	NA	NA|767aa|up_1|NZ_CP023598.1_2160433_2162734_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023598.1_2162903_2167283_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023598.1_2171032_2171497_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023598.1_2171594_2172458_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023598.1_2172495_2173767_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023598.1_2174038_2175154_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023598.1_2175144_2176485_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023598.1_2176521_2176902_-	NA	NA|621aa|down_6|NZ_CP023598.1_2177058_2178921_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023598.1_2178928_2179408_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023598.1_2179644_2180418_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023598.1_2181211_2181856_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	12	3119120-3120474	3,7,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023598.1_3112399_3112654_-,NA|135aa|up_7|NZ_CP023598.1_3112801_3113206_+,NA|64aa|up_6|NZ_CP023598.1_3113202_3113394_+,NA|86aa|up_4|NZ_CP023598.1_3114980_3115238_+,NA|104aa|up_3|NZ_CP023598.1_3115342_3115654_+,NA|203aa|up_2|NZ_CP023598.1_3116073_3116682_+,NA	NA|92aa|up_9|NZ_CP023598.1_3111948_3112224_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023598.1_3112399_3112654_-	NA	NA|135aa|up_7|NZ_CP023598.1_3112801_3113206_+	NA	NA|64aa|up_6|NZ_CP023598.1_3113202_3113394_+	NA	NA|385aa|up_5|NZ_CP023598.1_3113592_3114747_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023598.1_3114980_3115238_+	NA	NA|104aa|up_3|NZ_CP023598.1_3115342_3115654_+	NA	NA|203aa|up_2|NZ_CP023598.1_3116073_3116682_+	NA	NA|470aa|up_1|NZ_CP023598.1_3116752_3118162_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023598.1_3118158_3118971_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023598.1_3120500_3121762_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023598.1_3123559_3123901_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023598.1_3123901_3124918_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023598.1_3124930_3126079_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023598.1_3126174_3127302_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023598.1_3127298_3128207_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023598.1_3128187_3128898_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023598.1_3128907_3129282_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023598.1_3129278_3131717_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023598.1_3131713_3132436_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	13	3121797-3123511	8,6,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023598.1_3112399_3112654_-,NA|135aa|up_8|NZ_CP023598.1_3112801_3113206_+,NA|64aa|up_7|NZ_CP023598.1_3113202_3113394_+,NA|86aa|up_5|NZ_CP023598.1_3114980_3115238_+,NA|104aa|up_4|NZ_CP023598.1_3115342_3115654_+,NA|203aa|up_3|NZ_CP023598.1_3116073_3116682_+,NA	NA|85aa|up_9|NZ_CP023598.1_3112399_3112654_-	NA	NA|135aa|up_8|NZ_CP023598.1_3112801_3113206_+	NA	NA|64aa|up_7|NZ_CP023598.1_3113202_3113394_+	NA	NA|385aa|up_6|NZ_CP023598.1_3113592_3114747_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023598.1_3114980_3115238_+	NA	NA|104aa|up_4|NZ_CP023598.1_3115342_3115654_+	NA	NA|203aa|up_3|NZ_CP023598.1_3116073_3116682_+	NA	NA|470aa|up_2|NZ_CP023598.1_3116752_3118162_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023598.1_3118158_3118971_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023598.1_3120500_3121762_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023598.1_3123559_3123901_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023598.1_3123901_3124918_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023598.1_3124930_3126079_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023598.1_3126174_3127302_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023598.1_3127298_3128207_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023598.1_3128187_3128898_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023598.1_3128907_3129282_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023598.1_3129278_3131717_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023598.1_3131713_3132436_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023598.1_3132835_3133381_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	14	3740573-3741114	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023598.1_3755215_3755503_-,NA|87aa|down_9|NZ_CP023598.1_3768623_3768884_-	NA|282aa|up_9|NZ_CP023598.1_3719872_3720718_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023598.1_3721192_3721633_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023598.1_3721666_3722536_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023598.1_3722556_3723567_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023598.1_3723851_3724484_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023598.1_3724550_3725780_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023598.1_3726062_3727412_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023598.1_3727423_3728563_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023598.1_3728559_3729291_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023598.1_3729299_3736871_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023598.1_3743085_3743343_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023598.1_3743598_3753072_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023598.1_3753697_3754144_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023598.1_3754180_3754921_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023598.1_3755215_3755503_-	NA	NA|3717aa|down_5|NZ_CP023598.1_3755839_3766990_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023598.1_3767233_3768028_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023598.1_3768109_3768481_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023598.1_3768378_3768597_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023598.1_3768623_3768884_-	NA
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	15	3948229-3949980	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948820-3948855|3948820-3948855|3948820-3948855|3948820-3948855|3948820-3948855|3949711-3949737|3949711-3949737|3949711-3949737|3949711-3949737	NZ_CP023598.1_3946936-3946971|NZ_CP023598.1_3947278-3947313|NZ_CP023598.1_3947869-3947904|NZ_CP023598.1_3948220-3948255|NZ_CP023598.1_3932699-3932734|NZ_CP023598.1_361942-361968|NZ_CP023598.1_3941152-3941178|NZ_CP023598.1_3941488-3941514|NZ_CP023598.1_3941834-3941860	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023598.1_3953295_3954135_+	NA|318aa|up_9|NZ_CP023598.1_3920972_3921926_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023598.1_3921950_3922142_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023598.1_3922356_3923559_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023598.1_3923583_3924705_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023598.1_3924775_3926284_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_4|NZ_CP023598.1_3926454_3930600_+	pfam00934, PE, PE family	NA|1905aa|up_3|NZ_CP023598.1_3930890_3936605_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023598.1_3936771_3938319_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023598.1_3938315_3939152_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023598.1_3944947_3945604_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023598.1_3950688_3952335_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023598.1_3952408_3953200_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023598.1_3953295_3954135_+	NA	NA|399aa|down_3|NZ_CP023598.1_3954189_3955386_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023598.1_3955414_3956125_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023598.1_3956189_3957233_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023598.1_3957385_3958297_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023598.1_3958312_3959377_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NZ_CP023598.1_3960619_3961651_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NZ_CP023598.1_3961664_3962189_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_002447375.1_ASM244737v1	NZ_CP023598	Mycobacterium tuberculosis strain SLM100 chromosome, complete genome	16	4110542-4110630	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023598.1_4101128_4101899_-,NA|119aa|up_3|NZ_CP023598.1_4107033_4107390_+,NA|52aa|up_2|NZ_CP023598.1_4107489_4107645_+,NA|233aa|up_0|NZ_CP023598.1_4109646_4110345_-,NA|126aa|down_6|NZ_CP023598.1_4115865_4116243_+	NA|288aa|up_9|NZ_CP023598.1_4099510_4100374_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023598.1_4101128_4101899_-	NA	NA|549aa|up_7|NZ_CP023598.1_4101895_4103542_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023598.1_4103538_4104402_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023598.1_4104394_4105321_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023598.1_4105322_4106948_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023598.1_4107033_4107390_+	NA	NA|52aa|up_2|NZ_CP023598.1_4107489_4107645_+	NA	NA|652aa|up_1|NZ_CP023598.1_4107655_4109611_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023598.1_4109646_4110345_-	NA	NA|173aa|down_0|NZ_CP023598.1_4110690_4111209_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023598.1_4111209_4112193_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023598.1_4112185_4113379_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023598.1_4113384_4114206_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023598.1_4114337_4115021_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023598.1_4115020_4115758_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023598.1_4115865_4116243_+	NA	NA|225aa|down_7|NZ_CP023598.1_4116341_4117016_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023598.1_4117119_4117914_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023598.1_4117920_4118376_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
