The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023595	Mycobacterium tuberculosis strain SLM060 chromosome, complete genome	4411134	2940895	2976261	4411134	protease,head,tRNA,terminase,integrase,transposase,capsid	Tupanvirus(11.11%)	41	2969696:2969723	2980678:2980705
WP_003413486.1|2940895_2942974_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943082_2943310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096869134.1|2943306_2944692_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945036_2945537_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945553_2945994_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946140_2946818_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946802_2947156_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947168_2947594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2947590_2948265_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948342_2949164_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949299_2950193_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950195_2951014_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951028_2952210_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952268_2952700_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953213_2954455_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954764_2955127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2955473_2956598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956599_2957139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957278_2958577_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958615_2958897_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959041_2959527_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959553_2959811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959811_2962148_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962176_2962419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962419_2963097_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963292_2963949_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964111_2964558_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964732_2965065_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965184_2965544_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965645_2966104_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966239_2966620_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966616_2968113_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968302_2968539_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968611_2968785_+	hypothetical protein	NA	NA	NA	NA	NA
2969696:2969723	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969829_2970261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970257_2971256_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971269_2971734_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971866_2973127_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003901443.1|2973501_2974941_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974948_2975482_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975634_2976261_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980678:2980705	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023595	Mycobacterium tuberculosis strain SLM060 chromosome, complete genome	4411134	3710115	3796009	4411134	transposase,tRNA	Burkholderia_virus(28.57%)	56	NA	NA
WP_087902221.1|3710115_3711376_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711431_3711593_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711614_3713144_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713076_3714015_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714023_3715391_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715459_3716677_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716772_3718281_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718277_3719429_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719619_3720465_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720939_3721380_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721413_3722283_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722303_3723314_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723598_3724231_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724297_3725527_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725809_3727159_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727170_3728310_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728306_3729038_+	methyltransferase	NA	NA	NA	NA	NA
WP_096877542.1|3729046_3736618_-	PPE family protein	NA	NA	NA	NA	NA
WP_142283279.1|3736666_3742414_-	PE domain-containing protein	NA	NA	NA	NA	NA
WP_003417619.1|3742844_3743102_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3743357_3752831_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753456_3753903_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3753939_3754680_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3754974_3755262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3766991_3767786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767867_3768239_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768136_3768355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768381_3768642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768756_3769146_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769159_3769453_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769449_3770295_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770418_3770694_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770690_3770948_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3770989_3772180_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772296_3772665_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772661_3773213_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773219_3773801_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773781_3774150_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774127_3774520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901616.1|3774516_3777147_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003901617.1|3777382_3777847_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778213_3779980_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3779980_3780625_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780623_3781058_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_070891160.1|3781146_3784386_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.3	2.1e-118
WP_003900036.1|3784577_3785918_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3785959_3787135_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787188_3787293_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787371_3788013_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788013_3788262_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788266_3789694_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789801_3790455_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790493_3791999_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792003_3792894_-	diterpene synthase	NA	NA	NA	NA	NA
WP_078750126.1|3792902_3794696_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794747_3796009_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
