assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	1	366450-367148	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366738-366779|366813-366845	NZ_CP023594.1_374769-374810|NZ_CP023594.1_373584-373616	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023594.1_363462_363765_+,NA|161aa|down_1|NZ_CP023594.1_376558_377041_-,NA|410aa|down_5|NZ_CP023594.1_379157_380387_+	NA|262aa|up_9|NZ_CP023594.1_358157_358943_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023594.1_358931_359735_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023594.1_359744_361142_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023594.1_361320_363096_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023594.1_363238_363466_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023594.1_363462_363765_+	NA	NA|74aa|up_3|NZ_CP023594.1_363812_364034_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023594.1_364030_364456_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023594.1_364591_365224_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023594.1_365220_366129_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023594.1_375899_376571_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023594.1_376558_377041_-	NA	NA|239aa|down_2|NZ_CP023594.1_377098_377815_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023594.1_377916_378573_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023594.1_378642_379134_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023594.1_379157_380387_+	NA	NA|621aa|down_6|NZ_CP023594.1_380541_382404_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023594.1_382475_382862_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023594.1_382864_383527_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023594.1_383587_384472_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	2	691972-692048	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023594.1_677656_677872_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023594.1_677868_678276_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023594.1_678335_679022_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023594.1_679175_681809_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023594.1_681831_684219_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023594.1_684356_685079_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023594.1_685075_685873_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP023594.1_685874_686762_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023594.1_686767_687982_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023594.1_689005_690451_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023594.1_693183_694734_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023594.1_694785_695178_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023594.1_695174_695432_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023594.1_695614_696850_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023594.1_697100_697514_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023594.1_697510_697747_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023594.1_697850_698357_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023594.1_698470_698941_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023594.1_698984_699746_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023594.1_699802_700114_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	3	926565-927489	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	NGGNGCCGGCGGNNCCGGCGG	21	1	3	927325-927360|927325-927360|927325-927360	NZ_CP023594.1_675075-675040|NZ_CP023594.1_1213670-1213705|NZ_CP023594.1_2423702-2423667	NA	17	17	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023594.1_931490_932042_-,NA|81aa|down_8|NZ_CP023594.1_937505_937748_+	NA|685aa|up_9|NZ_CP023594.1_914201_916256_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023594.1_916421_917591_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023594.1_917678_918695_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023594.1_918856_919498_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023594.1_919578_920634_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023594.1_920685_921078_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023594.1_921135_921558_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023594.1_921519_921810_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023594.1_921914_922820_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023594.1_922838_923654_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023594.1_927758_930398_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023594.1_930865_931510_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023594.1_931490_932042_-	NA	NA|218aa|down_3|NZ_CP023594.1_932191_932845_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023594.1_932915_933944_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023594.1_934632_935403_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023594.1_935489_936302_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023594.1_936369_937230_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023594.1_937505_937748_+	NA	NA|431aa|down_9|NZ_CP023594.1_938024_939317_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	4	1191237-1191345	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023594.1_1180604_1182236_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023594.1_1182311_1183376_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023594.1_1183428_1183902_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023594.1_1183935_1184799_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023594.1_1184803_1185661_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023594.1_1185661_1186744_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023594.1_1186824_1187244_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023594.1_1187355_1187922_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023594.1_1187918_1188314_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023594.1_1188341_1190345_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023594.1_1192430_1194194_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023594.1_1194190_1194964_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023594.1_1194975_1196013_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023594.1_1196199_1197036_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023594.1_1197151_1198003_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023594.1_1198076_1199294_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023594.1_1199346_1200291_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023594.1_1200513_1201581_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023594.1_1201637_1203032_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023594.1_1203233_1203956_+	pfam06271, RDD, RDD family
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	5	1211871-1212727	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	73	1212254-1212275|1212299-1212314|1212437-1212458|1212437-1212458|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572|1212554-1212572	NZ_CP023594.1_2960468-2960447|NZ_CP023594.1_2088527-2088512|NZ_CP023594.1_837378-837399|NZ_CP023594.1_1217565-1217586|NZ_CP023594.1_1572748-1572730|NZ_CP023594.1_674739-674721|NZ_CP023594.1_1213397-1213415|NZ_CP023594.1_1217538-1217556|NZ_CP023594.1_1217610-1217628|NZ_CP023594.1_1630620-1630602|NZ_CP023594.1_1990732-1990714|NZ_CP023594.1_2061455-2061437|NZ_CP023594.1_2061902-2061884|NZ_CP023594.1_2062001-2061983|NZ_CP023594.1_2802017-2801999|NZ_CP023594.1_2805545-2805527|NZ_CP023594.1_1636841-1636823|NZ_CP023594.1_150188-150206|NZ_CP023594.1_333787-333769|NZ_CP023594.1_335206-335188|NZ_CP023594.1_335659-335641|NZ_CP023594.1_335710-335692|NZ_CP023594.1_335719-335701|NZ_CP023594.1_337990-337972|NZ_CP023594.1_338119-338101|NZ_CP023594.1_338386-338368|NZ_CP023594.1_338415-338433|NZ_CP023594.1_338509-338491|NZ_CP023594.1_363040-363022|NZ_CP023594.1_443408-443390|NZ_CP023594.1_546752-546734|NZ_CP023594.1_623942-623960|NZ_CP023594.1_624164-624182|NZ_CP023594.1_673905-673887|NZ_CP023594.1_840161-840179|NZ_CP023594.1_1090902-1090920|NZ_CP023594.1_1091550-1091568|NZ_CP023594.1_1212926-1212944|NZ_CP023594.1_1213316-1213334|NZ_CP023594.1_1217958-1217976|NZ_CP023594.1_1489131-1489113|NZ_CP023594.1_1618584-1618566|NZ_CP023594.1_1619037-1619019|NZ_CP023594.1_1635959-1635941|NZ_CP023594.1_1635968-1635950|NZ_CP023594.1_1864247-1864229|NZ_CP023594.1_1864775-1864757|NZ_CP023594.1_1990006-1989988|NZ_CP023594.1_2001368-2001386|NZ_CP023594.1_2088725-2088707|NZ_CP023594.1_2303425-2303407|NZ_CP023594.1_2356878-2356860|NZ_CP023594.1_2419528-2419546|NZ_CP023594.1_2423615-2423597|NZ_CP023594.1_2569110-2569092|NZ_CP023594.1_2693406-2693424|NZ_CP023594.1_2795331-2795313|NZ_CP023594.1_2795913-2795895|NZ_CP023594.1_3054504-3054522|NZ_CP023594.1_3054603-3054621|NZ_CP023594.1_3705363-3705381|NZ_CP023594.1_3737340-3737322|NZ_CP023594.1_3737964-3737946|NZ_CP023594.1_3738207-3738189|NZ_CP023594.1_3738340-3738322|NZ_CP023594.1_3802164-3802182|NZ_CP023594.1_3802347-3802365|NZ_CP023594.1_3802515-3802533|NZ_CP023594.1_3930337-3930355|NZ_CP023594.1_3932067-3932085|NZ_CP023594.1_3940538-3940556|NZ_CP023594.1_4031513-4031495|NZ_CP023594.1_4094038-4094056	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023594.1_1207303_1207570_+,NA|61aa|down_3|NZ_CP023594.1_1215145_1215328_+,NA|35aa|down_4|NZ_CP023594.1_1215437_1215542_+	NA|465aa|up_9|NZ_CP023594.1_1201637_1203032_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023594.1_1203233_1203956_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023594.1_1203987_1205154_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023594.1_1205224_1205719_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023594.1_1205904_1206339_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023594.1_1206440_1207307_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023594.1_1207303_1207570_+	NA	NA|674aa|up_2|NZ_CP023594.1_1207556_1209578_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023594.1_1209676_1210405_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023594.1_1210515_1211304_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023594.1_1213960_1214281_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023594.1_1214433_1214868_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023594.1_1214969_1215134_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023594.1_1215145_1215328_+	NA	NA|35aa|down_4|NZ_CP023594.1_1215437_1215542_+	NA	NA|152aa|down_5|NZ_CP023594.1_1215519_1215975_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023594.1_1216389_1218951_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023594.1_1219168_1220107_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023594.1_1220494_1221775_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023594.1_1221879_1222707_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	6	2088197-2088451	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088278-2088295|2088278-2088295|2088368-2088385	NZ_CP023594.1_401065-401048|NZ_CP023594.1_607397-607380|NZ_CP023594.1_3450111-3450094	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023594.1_2087556_2087820_-,NA	NA|165aa|up_9|NZ_CP023594.1_2073850_2074345_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023594.1_2074748_2075426_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023594.1_2075784_2078610_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023594.1_2078836_2079697_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023594.1_2079737_2080604_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023594.1_2080608_2082495_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023594.1_2082510_2084544_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023594.1_2084663_2086889_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023594.1_2087164_2087560_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023594.1_2087556_2087820_-	NA	NA|346aa|down_0|NZ_CP023594.1_2089588_2090626_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023594.1_2090625_2091993_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023594.1_2092166_2093603_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023594.1_2093638_2095090_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023594.1_2095119_2096070_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023594.1_2096084_2096501_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023594.1_2096778_2097201_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023594.1_2097249_2097552_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023594.1_2097548_2097863_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023594.1_2097862_2099596_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	7	2163289-2163393	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023594.1_2159833_2160241_-,NA|127aa|down_6|NZ_CP023594.1_2176462_2176843_-	NA|216aa|up_9|NZ_CP023594.1_2153147_2153795_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023594.1_2153801_2156024_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023594.1_2156061_2156505_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023594.1_2156618_2157212_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023594.1_2157294_2157900_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023594.1_2157999_2159004_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023594.1_2159103_2159856_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023594.1_2159833_2160241_-	NA	NA|368aa|up_1|NZ_CP023594.1_2160375_2161479_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023594.1_2161478_2162675_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023594.1_2167561_2170525_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023594.1_2170973_2171438_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023594.1_2171535_2172399_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023594.1_2172436_2173708_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023594.1_2173979_2175095_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023594.1_2175085_2176426_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023594.1_2176462_2176843_-	NA	NA|621aa|down_7|NZ_CP023594.1_2176999_2178862_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023594.1_2178869_2179349_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023594.1_2179585_2180359_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	8	2168727-2168946	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023594.1_2159833_2160241_-,NA|127aa|down_5|NZ_CP023594.1_2176462_2176843_-	NA|741aa|up_9|NZ_CP023594.1_2153801_2156024_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023594.1_2156061_2156505_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023594.1_2156618_2157212_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023594.1_2157294_2157900_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023594.1_2157999_2159004_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023594.1_2159103_2159856_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023594.1_2159833_2160241_-	NA	NA|368aa|up_2|NZ_CP023594.1_2160375_2161479_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023594.1_2161478_2162675_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023594.1_2162844_2167224_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023594.1_2170973_2171438_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023594.1_2171535_2172399_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023594.1_2172436_2173708_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023594.1_2173979_2175095_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023594.1_2175085_2176426_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023594.1_2176462_2176843_-	NA	NA|621aa|down_6|NZ_CP023594.1_2176999_2178862_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023594.1_2178869_2179349_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023594.1_2179585_2180359_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023594.1_2180362_2181130_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	9	3119095-3120449	1,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023594.1_3112374_3112629_-,NA|135aa|up_7|NZ_CP023594.1_3112776_3113181_+,NA|64aa|up_6|NZ_CP023594.1_3113177_3113369_+,NA|86aa|up_4|NZ_CP023594.1_3114955_3115213_+,NA|104aa|up_3|NZ_CP023594.1_3115317_3115629_+,NA|203aa|up_2|NZ_CP023594.1_3116048_3116657_+,NA	NA|92aa|up_9|NZ_CP023594.1_3111923_3112199_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023594.1_3112374_3112629_-	NA	NA|135aa|up_7|NZ_CP023594.1_3112776_3113181_+	NA	NA|64aa|up_6|NZ_CP023594.1_3113177_3113369_+	NA	NA|385aa|up_5|NZ_CP023594.1_3113567_3114722_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023594.1_3114955_3115213_+	NA	NA|104aa|up_3|NZ_CP023594.1_3115317_3115629_+	NA	NA|203aa|up_2|NZ_CP023594.1_3116048_3116657_+	NA	NA|470aa|up_1|NZ_CP023594.1_3116727_3118137_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023594.1_3118133_3118946_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023594.1_3120475_3121737_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023594.1_3123534_3123876_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023594.1_3123876_3124893_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023594.1_3124905_3126054_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023594.1_3126149_3127277_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023594.1_3127273_3128182_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023594.1_3128162_3128873_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023594.1_3128882_3129257_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023594.1_3129253_3131692_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023594.1_3131688_3132411_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	10	3121772-3123486	8,4,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-A,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023594.1_3112374_3112629_-,NA|135aa|up_8|NZ_CP023594.1_3112776_3113181_+,NA|64aa|up_7|NZ_CP023594.1_3113177_3113369_+,NA|86aa|up_5|NZ_CP023594.1_3114955_3115213_+,NA|104aa|up_4|NZ_CP023594.1_3115317_3115629_+,NA|203aa|up_3|NZ_CP023594.1_3116048_3116657_+,NA	NA|85aa|up_9|NZ_CP023594.1_3112374_3112629_-	NA	NA|135aa|up_8|NZ_CP023594.1_3112776_3113181_+	NA	NA|64aa|up_7|NZ_CP023594.1_3113177_3113369_+	NA	NA|385aa|up_6|NZ_CP023594.1_3113567_3114722_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023594.1_3114955_3115213_+	NA	NA|104aa|up_4|NZ_CP023594.1_3115317_3115629_+	NA	NA|203aa|up_3|NZ_CP023594.1_3116048_3116657_+	NA	NA|470aa|up_2|NZ_CP023594.1_3116727_3118137_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023594.1_3118133_3118946_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023594.1_3120475_3121737_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023594.1_3123534_3123876_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023594.1_3123876_3124893_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023594.1_3124905_3126054_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023594.1_3126149_3127277_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023594.1_3127273_3128182_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023594.1_3128162_3128873_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023594.1_3128882_3129257_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023594.1_3129253_3131692_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023594.1_3131688_3132411_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023594.1_3132810_3133356_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	11	3740534-3741075	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023594.1_3755167_3755455_-,NA|87aa|down_9|NZ_CP023594.1_3768545_3768806_-	NA|282aa|up_9|NZ_CP023594.1_3719785_3720631_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023594.1_3721105_3721546_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023594.1_3721579_3722449_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023594.1_3722469_3723480_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023594.1_3723764_3724397_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023594.1_3724463_3725693_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023594.1_3725975_3727325_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023594.1_3727336_3728476_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023594.1_3728472_3729204_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023594.1_3729212_3736784_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023594.1_3743037_3743295_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023594.1_3743550_3753024_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023594.1_3753649_3754096_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023594.1_3754132_3754873_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023594.1_3755167_3755455_-	NA	NA|3707aa|down_5|NZ_CP023594.1_3755791_3766912_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023594.1_3767155_3767950_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023594.1_3768031_3768403_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023594.1_3768300_3768519_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023594.1_3768545_3768806_-	NA
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	12	3948146-3949897	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948737-3948772|3948737-3948772|3948737-3948772|3948737-3948772|3948737-3948772|3949628-3949654|3949628-3949654|3949628-3949654|3949628-3949654	NZ_CP023594.1_3946853-3946888|NZ_CP023594.1_3947195-3947230|NZ_CP023594.1_3947786-3947821|NZ_CP023594.1_3948137-3948172|NZ_CP023594.1_3932622-3932657|NZ_CP023594.1_361980-362006|NZ_CP023594.1_3941039-3941065|NZ_CP023594.1_3941375-3941401|NZ_CP023594.1_3941721-3941747	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023594.1_3953212_3954052_+	NA|318aa|up_9|NZ_CP023594.1_3920895_3921849_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023594.1_3921873_3922065_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023594.1_3922279_3923482_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023594.1_3923506_3924628_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023594.1_3924698_3926207_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1385aa|up_4|NZ_CP023594.1_3926377_3930532_+	pfam00934, PE, PE family	NA|1890aa|up_3|NZ_CP023594.1_3930822_3936492_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023594.1_3936658_3938206_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023594.1_3938202_3939039_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023594.1_3944873_3945530_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023594.1_3950605_3952252_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023594.1_3952325_3953117_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023594.1_3953212_3954052_+	NA	NA|399aa|down_3|NZ_CP023594.1_3954106_3955303_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023594.1_3955331_3956042_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023594.1_3956106_3957150_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023594.1_3957302_3958214_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023594.1_3958229_3959294_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023594.1_3959310_3960495_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023594.1_3960536_3961568_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447295.1_ASM244729v1	NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	13	4110455-4110543	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023594.1_4101041_4101812_-,NA|119aa|up_3|NZ_CP023594.1_4106946_4107303_+,NA|52aa|up_2|NZ_CP023594.1_4107402_4107558_+,NA|233aa|up_0|NZ_CP023594.1_4109559_4110258_-,NA|126aa|down_6|NZ_CP023594.1_4115778_4116156_+	NA|288aa|up_9|NZ_CP023594.1_4099423_4100287_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023594.1_4101041_4101812_-	NA	NA|549aa|up_7|NZ_CP023594.1_4101808_4103455_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023594.1_4103451_4104315_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023594.1_4104307_4105234_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023594.1_4105235_4106861_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023594.1_4106946_4107303_+	NA	NA|52aa|up_2|NZ_CP023594.1_4107402_4107558_+	NA	NA|652aa|up_1|NZ_CP023594.1_4107568_4109524_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023594.1_4109559_4110258_-	NA	NA|173aa|down_0|NZ_CP023594.1_4110603_4111122_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023594.1_4111122_4112106_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023594.1_4112098_4113292_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023594.1_4113297_4114119_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023594.1_4114250_4114934_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023594.1_4114933_4115671_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023594.1_4115778_4116156_+	NA	NA|225aa|down_7|NZ_CP023594.1_4116254_4116929_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023594.1_4117034_4117829_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023594.1_4117835_4118291_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
