The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	4411306	2941098	2976464	4411306	protease,capsid,head,transposase,integrase,terminase,tRNA	Tupanvirus(11.11%)	41	2969899:2969926	2980881:2980908
WP_003413486.1|2941098_2943177_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943285_2943513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943509_2944895_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945239_2945740_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945756_2946197_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946343_2947021_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947005_2947359_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947371_2947797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947793_2948468_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948545_2949367_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949502_2950396_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950398_2951217_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951231_2952413_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952471_2952903_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953416_2954658_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954967_2955330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955676_2956801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956802_2957342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957481_2958780_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958818_2959100_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959244_2959730_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959756_2960014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960014_2962351_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962379_2962622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962622_2963300_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963495_2964152_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964314_2964761_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964935_2965268_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965387_2965747_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965848_2966307_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966442_2966823_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966819_2968316_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968505_2968742_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968814_2968988_+	hypothetical protein	NA	NA	NA	NA	NA
2969899:2969926	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970032_2970464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970460_2971459_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971472_2971937_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972069_2973330_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973704_2975144_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975151_2975685_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975837_2976464_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980881:2980908	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023594	Mycobacterium tuberculosis strain SLM056 chromosome, complete genome	4411306	3710281	3796171	4411306	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710281_3711542_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711597_3711759_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711780_3713310_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713242_3714181_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714189_3715557_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715625_3716843_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716938_3718447_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718443_3719595_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719785_3720631_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721105_3721546_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721579_3722449_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722469_3723480_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723764_3724397_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724463_3725693_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725975_3727325_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727336_3728476_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728472_3729204_+	methyltransferase	NA	NA	NA	NA	NA
WP_023637497.1|3729212_3736784_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743037_3743295_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743550_3753024_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753649_3754096_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754132_3754873_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755167_3755455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096865760.1|3755791_3766912_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767155_3767950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768031_3768403_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768300_3768519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768545_3768806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768920_3769310_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769323_3769617_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769613_3770459_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770582_3770858_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770854_3771112_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771153_3772344_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772460_3772829_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772825_3773377_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773383_3773965_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773945_3774314_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774291_3774684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774680_3777311_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777546_3778011_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778377_3780144_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780144_3780789_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780787_3781222_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781310_3784550_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784741_3786082_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786123_3787299_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787352_3787457_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787535_3788177_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788177_3788426_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788430_3789858_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789965_3790619_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790657_3792163_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792167_3793058_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793066_3794677_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794621_3794867_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794909_3796171_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
