The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023588	Mycobacterium tuberculosis strain TBDM425 chromosome, complete genome	4411143	2940852	2976219	4411143	capsid,tRNA,protease,integrase,terminase,transposase,head	Tupanvirus(11.11%)	40	2969654:2969681	2980636:2980663
WP_003413486.1|2940852_2942931_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943039_2943267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943263_2944649_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2944993_2945494_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945510_2945951_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946097_2946775_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946759_2947113_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947125_2947551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947547_2948222_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948299_2949121_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949256_2950150_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950152_2950971_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2950985_2952167_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952225_2952657_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953170_2954412_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954721_2955084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955430_2956555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956556_2957096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957235_2958534_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958572_2958854_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2958998_2959484_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959510_2959768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959768_2962105_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962133_2962376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962376_2963054_+	membrane protein	NA	NA	NA	NA	NA
WP_003413657.1|2964069_2964516_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964690_2965023_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965142_2965502_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965603_2966062_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966197_2966578_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966574_2968071_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968260_2968497_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968569_2968743_+	hypothetical protein	NA	NA	NA	NA	NA
2969654:2969681	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969787_2970219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970215_2971214_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971227_2971692_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971824_2973085_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973459_2974899_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974906_2975440_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975592_2976219_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980636:2980663	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023588	Mycobacterium tuberculosis strain TBDM425 chromosome, complete genome	4411143	3710091	3796020	4411143	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710091_3711352_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711407_3711569_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711590_3713120_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713052_3713991_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_072433941.1|3713999_3715367_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715435_3716653_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716748_3718257_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718253_3719405_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719595_3720441_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720915_3721356_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721389_3722259_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722279_3723290_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723574_3724207_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724273_3725503_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725785_3727135_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727146_3728286_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728282_3729014_+	methyltransferase	NA	NA	NA	NA	NA
WP_096874130.1|3729022_3736594_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742856_3743114_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_070890838.1|3743369_3752843_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753468_3753915_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3753951_3754692_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3754986_3755274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755610_3766761_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767004_3767799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767880_3768252_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768149_3768368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768394_3768655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768769_3769159_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769172_3769466_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769462_3770308_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770431_3770707_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770703_3770961_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771002_3772193_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772309_3772678_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772674_3773226_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773232_3773814_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773794_3774163_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774140_3774533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774529_3777160_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777395_3777860_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778226_3779993_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3779993_3780638_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780636_3781071_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781159_3784399_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784590_3785931_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3785972_3787148_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787201_3787306_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787384_3788026_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788026_3788275_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788279_3789707_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789814_3790468_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790506_3792012_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792016_3792907_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3792915_3794526_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794470_3794716_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794758_3796020_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
