The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023585	Mycobacterium tuberculosis strain MDRDM1098 chromosome, complete genome	4411148	2940881	2976248	4411148	transposase,capsid,integrase,terminase,head,protease,tRNA	Tupanvirus(11.11%)	40	2969683:2969710	2980665:2980692
WP_003413486.1|2940881_2942960_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943068_2943296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943292_2944678_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945022_2945523_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945539_2945980_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946126_2946804_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946788_2947142_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947154_2947580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947576_2948251_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948328_2949150_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949285_2950179_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950181_2951000_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951014_2952196_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952254_2952686_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953199_2954441_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954750_2955113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955459_2956584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956585_2957125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957264_2958563_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958601_2958883_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959027_2959513_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959539_2959797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959797_2962134_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962162_2962405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962405_2963083_+	membrane protein	NA	NA	NA	NA	NA
WP_003413657.1|2964098_2964545_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964719_2965052_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965171_2965531_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965632_2966091_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966226_2966607_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966603_2968100_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968289_2968526_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968598_2968772_+	hypothetical protein	NA	NA	NA	NA	NA
2969683:2969710	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969816_2970248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970244_2971243_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971256_2971721_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971853_2973114_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973488_2974928_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2974935_2975469_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975621_2976248_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980665:2980692	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023585	Mycobacterium tuberculosis strain MDRDM1098 chromosome, complete genome	4411148	3710116	3796045	4411148	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710116_3711377_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711432_3711594_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711615_3713145_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713077_3714016_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_072433941.1|3714024_3715392_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715460_3716678_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716773_3718282_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718278_3719430_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719620_3720466_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720940_3721381_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721414_3722284_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722304_3723315_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723599_3724232_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724298_3725528_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725810_3727160_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727171_3728311_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728307_3729039_+	methyltransferase	NA	NA	NA	NA	NA
WP_096874130.1|3729047_3736619_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742881_3743139_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_070890838.1|3743394_3752868_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753493_3753940_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3753976_3754717_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755011_3755299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755635_3766786_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767029_3767824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767905_3768277_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768174_3768393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768419_3768680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768794_3769184_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769197_3769491_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769487_3770333_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770456_3770732_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770728_3770986_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771027_3772218_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772334_3772703_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772699_3773251_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773257_3773839_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773819_3774188_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774165_3774558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774554_3777185_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777420_3777885_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778251_3780018_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780018_3780663_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780661_3781096_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781184_3784424_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784615_3785956_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3785997_3787173_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787226_3787331_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787409_3788051_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788051_3788300_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788304_3789732_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789839_3790493_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790531_3792037_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792041_3792932_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3792940_3794551_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794495_3794741_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794783_3796045_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
