The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023584	Mycobacterium tuberculosis strain MDRDM627 chromosome, complete genome	4411215	2940951	2976317	4411215	capsid,transposase,head,tRNA,integrase,terminase,protease	Tupanvirus(11.11%)	40	2969753:2969780	2980734:2980761
WP_003413486.1|2940951_2943030_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943138_2943366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943362_2944748_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945092_2945593_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_096865521.1|2945609_2946050_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946196_2946874_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946858_2947212_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947224_2947650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947646_2948321_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948398_2949220_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949355_2950249_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950251_2951070_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951084_2952266_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952324_2952756_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953269_2954511_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954820_2955183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955529_2956654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956655_2957195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957334_2958633_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958671_2958953_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959097_2959583_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959609_2959867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959867_2962204_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962232_2962475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962475_2963153_+	membrane protein	NA	NA	NA	NA	NA
WP_003413657.1|2964168_2964615_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964789_2965122_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965241_2965601_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965702_2966161_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966296_2966677_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966673_2968170_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968359_2968596_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968668_2968842_+	hypothetical protein	NA	NA	NA	NA	NA
2969753:2969780	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969886_2970318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970314_2971313_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971326_2971791_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971923_2973184_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973557_2974997_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975004_2975538_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975690_2976317_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980734:2980761	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023584	Mycobacterium tuberculosis strain MDRDM627 chromosome, complete genome	4411215	3710194	3796123	4411215	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710194_3711455_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711510_3711672_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711693_3713223_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_096865610.1|3713155_3714094_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_096865562.1|3714102_3715470_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715538_3716756_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716851_3718360_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718356_3719508_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719698_3720544_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721018_3721459_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721492_3722362_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722382_3723393_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723677_3724310_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724376_3725606_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725888_3727238_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727249_3728389_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728385_3729117_+	methyltransferase	NA	NA	NA	NA	NA
WP_096865563.1|3729125_3736697_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742959_3743217_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_070890838.1|3743472_3752946_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753571_3754018_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754054_3754795_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755089_3755377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755713_3766864_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767107_3767902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767983_3768355_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768252_3768471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768497_3768758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768872_3769262_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769275_3769569_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769565_3770411_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770534_3770810_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770806_3771064_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771105_3772296_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772412_3772781_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772777_3773329_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773335_3773917_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773897_3774266_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774243_3774636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774632_3777263_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777498_3777963_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778329_3780096_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780096_3780741_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780739_3781174_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781262_3784502_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784693_3786034_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786075_3787251_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787304_3787409_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787487_3788129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788129_3788378_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788382_3789810_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789917_3790571_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790609_3792115_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792119_3793010_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793018_3794629_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794573_3794819_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794861_3796123_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
