assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	1	333651-334449	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP023582.1_333166_333349_-,NA	NA|398aa|up_9|NZ_CP023582.1_323344_324538_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP023582.1_324573_326256_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP023582.1_326272_328468_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP023582.1_328581_329715_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP023582.1_329711_330332_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP023582.1_330428_331010_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP023582.1_330939_331665_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP023582.1_331754_332675_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP023582.1_332714_333143_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP023582.1_333166_333349_-	NA	NA|838aa|down_0|NZ_CP023582.1_336548_339062_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP023582.1_339352_340963_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP023582.1_340986_341895_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP023582.1_342118_344014_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP023582.1_344010_345627_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1332aa|down_5|NZ_CP023582.1_345623_349619_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP023582.1_349615_349924_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP023582.1_349926_351468_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP023582.1_351516_351810_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP023582.1_351839_352130_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	2	366419-367117	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366707-366748|366782-366814	NZ_CP023582.1_374738-374779|NZ_CP023582.1_373553-373585	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023582.1_363431_363734_+,NA|161aa|down_1|NZ_CP023582.1_376527_377010_-,NA|410aa|down_5|NZ_CP023582.1_379126_380356_+	NA|262aa|up_9|NZ_CP023582.1_358162_358948_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023582.1_358936_359740_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023582.1_359749_361147_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|580aa|up_6|NZ_CP023582.1_361325_363065_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023582.1_363207_363435_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023582.1_363431_363734_+	NA	NA|74aa|up_3|NZ_CP023582.1_363781_364003_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023582.1_363999_364425_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023582.1_364560_365193_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023582.1_365189_366098_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023582.1_375868_376540_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023582.1_376527_377010_-	NA	NA|239aa|down_2|NZ_CP023582.1_377067_377784_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023582.1_377885_378542_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023582.1_378611_379103_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023582.1_379126_380356_+	NA	NA|621aa|down_6|NZ_CP023582.1_380510_382373_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023582.1_382444_382831_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023582.1_382833_383496_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023582.1_383556_384441_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	3	631216-631353	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631234-631251|631234-631251|631318-631335	NZ_CP023582.1_22466-22483|NZ_CP023582.1_1411954-1411971|NZ_CP023582.1_973165-973182	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023582.1_622054_622216_-,NA|478aa|up_0|NZ_CP023582.1_628231_629665_-,NA|450aa|down_2|NZ_CP023582.1_632988_634338_-,NA|93aa|down_5|NZ_CP023582.1_635868_636147_-	NA|325aa|up_9|NZ_CP023582.1_619824_620799_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023582.1_620840_622058_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023582.1_622054_622216_-	NA	NA|106aa|up_6|NZ_CP023582.1_622262_622580_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023582.1_622726_624511_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023582.1_624406_625414_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023582.1_625495_626374_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023582.1_626390_627185_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023582.1_627181_628222_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023582.1_628231_629665_-	NA	NA|211aa|down_0|NZ_CP023582.1_631676_632309_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023582.1_632305_632968_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023582.1_632988_634338_-	NA	NA|381aa|down_3|NZ_CP023582.1_634349_635492_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023582.1_635506_635809_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023582.1_635868_636147_-	NA	NA|418aa|down_6|NZ_CP023582.1_636143_637397_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023582.1_637516_637903_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023582.1_637965_638850_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023582.1_638945_639848_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	4	691958-692034	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023582.1_677643_677859_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023582.1_677855_678263_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023582.1_678322_679009_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023582.1_679162_681796_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023582.1_681818_684206_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023582.1_684343_685066_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023582.1_685062_685860_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_2|NZ_CP023582.1_686007_686748_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023582.1_686753_687968_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023582.1_688991_690437_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023582.1_693169_694720_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023582.1_694771_695164_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023582.1_695160_695418_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023582.1_695600_696836_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023582.1_697086_697500_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023582.1_697496_697733_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023582.1_697836_698343_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023582.1_698456_698927_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023582.1_698970_699732_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023582.1_699788_700100_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	5	926555-927502	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927338-927373|927338-927373|927338-927373	NZ_CP023582.1_675062-675027|NZ_CP023582.1_1213638-1213673|NZ_CP023582.1_2423658-2423623	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023582.1_931494_932046_-,NA|81aa|down_8|NZ_CP023582.1_937509_937752_+	NA|685aa|up_9|NZ_CP023582.1_914190_916245_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023582.1_916410_917580_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023582.1_917667_918684_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023582.1_918845_919487_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023582.1_919568_920624_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023582.1_920675_921068_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023582.1_921125_921548_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023582.1_921509_921800_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023582.1_921904_922810_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023582.1_922828_923644_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|877aa|down_0|NZ_CP023582.1_927771_930402_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023582.1_930869_931514_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023582.1_931494_932046_-	NA	NA|218aa|down_3|NZ_CP023582.1_932195_932849_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023582.1_932919_933948_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023582.1_934636_935407_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023582.1_935493_936306_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023582.1_936373_937234_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023582.1_937509_937752_+	NA	NA|431aa|down_9|NZ_CP023582.1_938028_939321_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	6	1191244-1191352	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023582.1_1180611_1182243_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023582.1_1182318_1183383_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023582.1_1183435_1183909_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023582.1_1183942_1184806_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023582.1_1184810_1185668_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023582.1_1185668_1186751_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023582.1_1186831_1187251_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023582.1_1187362_1187929_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023582.1_1187925_1188321_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023582.1_1188348_1190352_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023582.1_1192437_1194201_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023582.1_1194197_1194971_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023582.1_1194982_1196020_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023582.1_1196206_1197043_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023582.1_1197158_1198010_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023582.1_1198083_1199301_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023582.1_1199353_1200298_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023582.1_1200520_1201588_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023582.1_1201644_1203039_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023582.1_1203240_1203963_+	pfam06271, RDD, RDD family
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	7	1211878-1212734	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	72	1212261-1212282|1212306-1212321|1212444-1212465|1212444-1212465|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579|1212561-1212579	NZ_CP023582.1_2960409-2960388|NZ_CP023582.1_2088493-2088478|NZ_CP023582.1_837367-837388|NZ_CP023582.1_1217533-1217554|NZ_CP023582.1_674726-674708|NZ_CP023582.1_1213404-1213422|NZ_CP023582.1_1217506-1217524|NZ_CP023582.1_1217578-1217596|NZ_CP023582.1_1630577-1630559|NZ_CP023582.1_1633394-1633376|NZ_CP023582.1_1990699-1990681|NZ_CP023582.1_2061421-2061403|NZ_CP023582.1_2061868-2061850|NZ_CP023582.1_2061967-2061949|NZ_CP023582.1_2801967-2801949|NZ_CP023582.1_2805486-2805468|NZ_CP023582.1_150188-150206|NZ_CP023582.1_335208-335190|NZ_CP023582.1_335661-335643|NZ_CP023582.1_335712-335694|NZ_CP023582.1_335721-335703|NZ_CP023582.1_337992-337974|NZ_CP023582.1_338121-338103|NZ_CP023582.1_338388-338370|NZ_CP023582.1_338417-338435|NZ_CP023582.1_338511-338493|NZ_CP023582.1_363009-362991|NZ_CP023582.1_443383-443365|NZ_CP023582.1_546727-546709|NZ_CP023582.1_623917-623935|NZ_CP023582.1_624139-624157|NZ_CP023582.1_673892-673874|NZ_CP023582.1_840150-840168|NZ_CP023582.1_1090907-1090925|NZ_CP023582.1_1091555-1091573|NZ_CP023582.1_1095613-1095595|NZ_CP023582.1_1212933-1212951|NZ_CP023582.1_1213323-1213341|NZ_CP023582.1_1217926-1217944|NZ_CP023582.1_1489098-1489080|NZ_CP023582.1_1618541-1618523|NZ_CP023582.1_1618994-1618976|NZ_CP023582.1_1635907-1635889|NZ_CP023582.1_1635916-1635898|NZ_CP023582.1_1864190-1864172|NZ_CP023582.1_1864718-1864700|NZ_CP023582.1_1989973-1989955|NZ_CP023582.1_2001333-2001351|NZ_CP023582.1_2088691-2088673|NZ_CP023582.1_2303380-2303362|NZ_CP023582.1_2356832-2356814|NZ_CP023582.1_2419484-2419502|NZ_CP023582.1_2423571-2423553|NZ_CP023582.1_2569064-2569046|NZ_CP023582.1_2693358-2693376|NZ_CP023582.1_2795282-2795264|NZ_CP023582.1_2795864-2795846|NZ_CP023582.1_3054445-3054463|NZ_CP023582.1_3054544-3054562|NZ_CP023582.1_3705345-3705363|NZ_CP023582.1_3737321-3737303|NZ_CP023582.1_3737945-3737927|NZ_CP023582.1_3738188-3738170|NZ_CP023582.1_3738321-3738303|NZ_CP023582.1_3802166-3802184|NZ_CP023582.1_3802349-3802367|NZ_CP023582.1_3802517-3802535|NZ_CP023582.1_3930339-3930357|NZ_CP023582.1_3932078-3932096|NZ_CP023582.1_3940558-3940576|NZ_CP023582.1_4031545-4031527|NZ_CP023582.1_4094064-4094082	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023582.1_1207310_1207577_+,NA|61aa|down_3|NZ_CP023582.1_1215113_1215296_+,NA|35aa|down_4|NZ_CP023582.1_1215405_1215510_+	NA|465aa|up_9|NZ_CP023582.1_1201644_1203039_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023582.1_1203240_1203963_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023582.1_1203994_1205161_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023582.1_1205231_1205726_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023582.1_1205911_1206346_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023582.1_1206447_1207314_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023582.1_1207310_1207577_+	NA	NA|674aa|up_2|NZ_CP023582.1_1207563_1209585_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023582.1_1209683_1210412_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023582.1_1210522_1211311_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023582.1_1213928_1214249_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023582.1_1214401_1214836_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023582.1_1214934_1215102_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023582.1_1215113_1215296_+	NA	NA|35aa|down_4|NZ_CP023582.1_1215405_1215510_+	NA	NA|152aa|down_5|NZ_CP023582.1_1215487_1215943_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023582.1_1216357_1218919_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023582.1_1219136_1220075_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023582.1_1220462_1221743_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023582.1_1221847_1222675_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	8	1572073-1573145	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023582.1_1563836_1564154_+,NA	NA|103aa|up_9|NZ_CP023582.1_1561351_1561660_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023582.1_1561656_1563276_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023582.1_1563836_1564154_+	NA	NA|209aa|up_6|NZ_CP023582.1_1564288_1564915_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023582.1_1564980_1565313_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023582.1_1565328_1566585_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023582.1_1566712_1567924_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023582.1_1567996_1569475_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023582.1_1569471_1570857_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023582.1_1570934_1571969_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023582.1_1573999_1574401_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023582.1_1574397_1574655_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023582.1_1574737_1575697_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023582.1_1575721_1576684_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023582.1_1576817_1577420_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023582.1_1577500_1579468_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023582.1_1579485_1580310_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023582.1_1580478_1580961_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023582.1_1581032_1581857_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023582.1_1582053_1582992_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	9	1636485-1636711	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP023582.1_1623002_1623116_-,NA|137aa|up_7|NZ_CP023582.1_1623165_1623576_-,NA|288aa|down_2|NZ_CP023582.1_1640549_1641413_+	NA|162aa|up_9|NZ_CP023582.1_1622085_1622571_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP023582.1_1623002_1623116_-	NA	NA|137aa|up_7|NZ_CP023582.1_1623165_1623576_-	NA	NA|248aa|up_6|NZ_CP023582.1_1623592_1624336_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP023582.1_1624332_1625244_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP023582.1_1625296_1626841_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP023582.1_1626837_1627959_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP023582.1_1627975_1630078_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1327aa|up_1|NZ_CP023582.1_1630516_1634497_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP023582.1_1634898_1635825_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP023582.1_1638250_1639516_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP023582.1_1639543_1640530_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP023582.1_1640549_1641413_+	NA	NA|311aa|down_3|NZ_CP023582.1_1641362_1642295_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP023582.1_1642406_1643192_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP023582.1_1643188_1644130_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP023582.1_1644232_1646008_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP023582.1_1646055_1646862_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP023582.1_1646858_1649399_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP023582.1_1649395_1650589_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	10	2088163-2088417	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088244-2088261|2088244-2088261|2088334-2088351	NZ_CP023582.1_401034-401017|NZ_CP023582.1_607372-607355|NZ_CP023582.1_3450051-3450034	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023582.1_2087522_2087786_-,NA	NA|165aa|up_9|NZ_CP023582.1_2073816_2074311_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023582.1_2074714_2075392_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023582.1_2075750_2078576_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023582.1_2078802_2079663_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023582.1_2079703_2080570_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023582.1_2080574_2082461_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023582.1_2082476_2084510_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023582.1_2084629_2086855_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023582.1_2087130_2087526_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023582.1_2087522_2087786_-	NA	NA|346aa|down_0|NZ_CP023582.1_2089554_2090592_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023582.1_2090591_2091959_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023582.1_2092132_2093569_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023582.1_2093604_2095056_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023582.1_2095085_2096036_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023582.1_2096050_2096467_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023582.1_2096744_2097167_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023582.1_2097215_2097518_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023582.1_2097514_2097829_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023582.1_2097828_2099562_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	11	2163244-2163348	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023582.1_2159788_2160196_-,NA|127aa|down_6|NZ_CP023582.1_2176417_2176798_-	NA|216aa|up_9|NZ_CP023582.1_2153102_2153750_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023582.1_2153756_2155979_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023582.1_2156016_2156460_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023582.1_2156573_2157167_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023582.1_2157249_2157855_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023582.1_2157954_2158959_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023582.1_2159058_2159811_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023582.1_2159788_2160196_-	NA	NA|368aa|up_1|NZ_CP023582.1_2160330_2161434_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023582.1_2161433_2162630_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023582.1_2167516_2170480_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023582.1_2170928_2171393_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023582.1_2171490_2172354_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023582.1_2172391_2173663_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023582.1_2173934_2175050_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023582.1_2175040_2176381_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023582.1_2176417_2176798_-	NA	NA|621aa|down_7|NZ_CP023582.1_2176954_2178817_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023582.1_2178824_2179304_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023582.1_2179540_2180314_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	12	2168682-2168901	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023582.1_2159788_2160196_-,NA|127aa|down_5|NZ_CP023582.1_2176417_2176798_-	NA|741aa|up_9|NZ_CP023582.1_2153756_2155979_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023582.1_2156016_2156460_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023582.1_2156573_2157167_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023582.1_2157249_2157855_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023582.1_2157954_2158959_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023582.1_2159058_2159811_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023582.1_2159788_2160196_-	NA	NA|368aa|up_2|NZ_CP023582.1_2160330_2161434_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023582.1_2161433_2162630_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023582.1_2162799_2167179_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023582.1_2170928_2171393_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023582.1_2171490_2172354_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023582.1_2172391_2173663_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023582.1_2173934_2175050_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023582.1_2175040_2176381_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023582.1_2176417_2176798_-	NA	NA|621aa|down_6|NZ_CP023582.1_2176954_2178817_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023582.1_2178824_2179304_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023582.1_2179540_2180314_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023582.1_2180317_2181085_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	13	3074338-3074418	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCGATCGCAAGCGCGGCGAAGCCG	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|118aa|down_2|NZ_CP023582.1_3076208_3076562_-,NA|97aa|down_3|NZ_CP023582.1_3076444_3076735_-,NA|158aa|down_8|NZ_CP023582.1_3080960_3081434_-	NA|92aa|up_9|NZ_CP023582.1_3068030_3068306_-	cd17267, RMtype1_S_EcoAO83I-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|541aa|up_8|NZ_CP023582.1_3068302_3069925_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|139aa|up_7|NZ_CP023582.1_3070011_3070428_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|89aa|up_6|NZ_CP023582.1_3070424_3070691_-	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription]	NA|132aa|up_5|NZ_CP023582.1_3070716_3071112_-	COG3742, COG3742, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|up_4|NZ_CP023582.1_3071108_3071378_-	pfam07704, PSK_trans_fac, Rv0623-like transcription factor	NA|365aa|up_3|NZ_CP023582.1_3071387_3072482_-	cd17266, RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Staphylococcus aureus subsp	NA|140aa|up_2|NZ_CP023582.1_3072478_3072898_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|160aa|up_1|NZ_CP023582.1_3072971_3073451_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|267aa|up_0|NZ_CP023582.1_3073521_3074322_-	PRK01827, thyA, thymidylate synthase; Reviewed	NA|246aa|down_0|NZ_CP023582.1_3074477_3075215_+	pfam01738, DLH, Dienelactone hydrolase family	NA|261aa|down_1|NZ_CP023582.1_3075429_3076212_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|118aa|down_2|NZ_CP023582.1_3076208_3076562_-	NA	NA|97aa|down_3|NZ_CP023582.1_3076444_3076735_-	NA	NA|395aa|down_4|NZ_CP023582.1_3076735_3077920_-	pfam00823, PPE, PPE family	NA|276aa|down_5|NZ_CP023582.1_3077999_3078827_-	pfam00934, PE, PE family	NA|383aa|down_6|NZ_CP023582.1_3079150_3080299_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|151aa|down_7|NZ_CP023582.1_3080422_3080875_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|158aa|down_8|NZ_CP023582.1_3080960_3081434_-	NA	NA|246aa|down_9|NZ_CP023582.1_3081445_3082183_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	14	3119027-3120381	2,9,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,17,18	18	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023582.1_3112306_3112561_-,NA|135aa|up_7|NZ_CP023582.1_3112708_3113113_+,NA|64aa|up_6|NZ_CP023582.1_3113109_3113301_+,NA|86aa|up_4|NZ_CP023582.1_3114887_3115145_+,NA|104aa|up_3|NZ_CP023582.1_3115249_3115561_+,NA|203aa|up_2|NZ_CP023582.1_3115980_3116589_+,NA	NA|92aa|up_9|NZ_CP023582.1_3111855_3112131_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023582.1_3112306_3112561_-	NA	NA|135aa|up_7|NZ_CP023582.1_3112708_3113113_+	NA	NA|64aa|up_6|NZ_CP023582.1_3113109_3113301_+	NA	NA|385aa|up_5|NZ_CP023582.1_3113499_3114654_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023582.1_3114887_3115145_+	NA	NA|104aa|up_3|NZ_CP023582.1_3115249_3115561_+	NA	NA|203aa|up_2|NZ_CP023582.1_3115980_3116589_+	NA	NA|470aa|up_1|NZ_CP023582.1_3116659_3118069_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023582.1_3118065_3118878_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023582.1_3120407_3121669_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023582.1_3123466_3123808_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023582.1_3123808_3124825_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023582.1_3124837_3125986_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023582.1_3126081_3127209_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023582.1_3127205_3128114_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023582.1_3128094_3128805_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023582.1_3128814_3129189_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023582.1_3129185_3131624_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023582.1_3131620_3132343_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	15	3121704-3123418	10,6,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	23,23,20,20	23	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023582.1_3112306_3112561_-,NA|135aa|up_8|NZ_CP023582.1_3112708_3113113_+,NA|64aa|up_7|NZ_CP023582.1_3113109_3113301_+,NA|86aa|up_5|NZ_CP023582.1_3114887_3115145_+,NA|104aa|up_4|NZ_CP023582.1_3115249_3115561_+,NA|203aa|up_3|NZ_CP023582.1_3115980_3116589_+,NA	NA|85aa|up_9|NZ_CP023582.1_3112306_3112561_-	NA	NA|135aa|up_8|NZ_CP023582.1_3112708_3113113_+	NA	NA|64aa|up_7|NZ_CP023582.1_3113109_3113301_+	NA	NA|385aa|up_6|NZ_CP023582.1_3113499_3114654_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023582.1_3114887_3115145_+	NA	NA|104aa|up_4|NZ_CP023582.1_3115249_3115561_+	NA	NA|203aa|up_3|NZ_CP023582.1_3115980_3116589_+	NA	NA|470aa|up_2|NZ_CP023582.1_3116659_3118069_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023582.1_3118065_3118878_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023582.1_3120407_3121669_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023582.1_3123466_3123808_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023582.1_3123808_3124825_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023582.1_3124837_3125986_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023582.1_3126081_3127209_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023582.1_3127205_3128114_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023582.1_3128094_3128805_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023582.1_3128814_3129189_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023582.1_3129185_3131624_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023582.1_3131620_3132343_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023582.1_3132742_3133288_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	16	3740506-3741047	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023582.1_3755130_3755418_-,NA|87aa|down_9|NZ_CP023582.1_3768538_3768799_-	NA|384aa|up_9|NZ_CP023582.1_3718425_3719577_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NZ_CP023582.1_3719767_3720613_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NZ_CP023582.1_3721087_3721528_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NZ_CP023582.1_3721561_3722431_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NZ_CP023582.1_3722451_3723462_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_4|NZ_CP023582.1_3723746_3724379_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_3|NZ_CP023582.1_3724445_3725675_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NZ_CP023582.1_3725957_3727307_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NZ_CP023582.1_3727318_3728458_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NZ_CP023582.1_3728454_3729186_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|down_0|NZ_CP023582.1_3743000_3743258_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023582.1_3743513_3752987_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023582.1_3753612_3754059_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023582.1_3754095_3754836_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023582.1_3755130_3755418_-	NA	NA|3717aa|down_5|NZ_CP023582.1_3755754_3766905_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023582.1_3767148_3767943_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023582.1_3768024_3768396_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023582.1_3768293_3768512_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023582.1_3768538_3768799_-	NA
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	17	3948175-3949926	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948766-3948801|3948766-3948801|3948766-3948801|3948766-3948801|3948766-3948801|3949657-3949683|3949657-3949683|3949657-3949683|3949657-3949683	NZ_CP023582.1_3946873-3946908|NZ_CP023582.1_3947215-3947250|NZ_CP023582.1_3947815-3947850|NZ_CP023582.1_3948166-3948201|NZ_CP023582.1_3932633-3932668|NZ_CP023582.1_361985-362011|NZ_CP023582.1_3941059-3941085|NZ_CP023582.1_3941395-3941421|NZ_CP023582.1_3941741-3941767	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023582.1_3953241_3954081_+	NA|318aa|up_9|NZ_CP023582.1_3920897_3921851_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_8|NZ_CP023582.1_3921875_3922067_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_7|NZ_CP023582.1_3922281_3923484_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_6|NZ_CP023582.1_3923508_3924630_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_5|NZ_CP023582.1_3924700_3926209_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1385aa|up_4|NZ_CP023582.1_3926379_3930534_+	pfam00934, PE, PE family	NA|1896aa|up_3|NZ_CP023582.1_3930824_3936512_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023582.1_3936678_3938226_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023582.1_3938222_3939059_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023582.1_3944884_3945541_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023582.1_3950634_3952281_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023582.1_3952354_3953146_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023582.1_3953241_3954081_+	NA	NA|399aa|down_3|NZ_CP023582.1_3954135_3955332_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023582.1_3955360_3956071_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023582.1_3956135_3957179_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023582.1_3957331_3958243_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023582.1_3958258_3959323_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023582.1_3959339_3960524_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023582.1_3960565_3961597_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	18	3998346-3998505	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	1	1	3998415-3998435	NZ_CP023582.1_430141-430121	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023582.1_4007977_4008244_-,NA|57aa|down_9|NZ_CP023582.1_4008274_4008445_-	NA|305aa|up_9|NZ_CP023582.1_3987192_3988107_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023582.1_3988129_3988909_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023582.1_3988963_3989707_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023582.1_3989706_3990585_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023582.1_3990581_3991334_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023582.1_3991431_3992499_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023582.1_3992495_3994553_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023582.1_3994640_3995510_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023582.1_3995614_3996775_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023582.1_3996839_3997442_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023582.1_3999457_4000246_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023582.1_4000242_4001400_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023582.1_4001447_4002971_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023582.1_4002971_4004105_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023582.1_4004101_4005061_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023582.1_4005057_4006014_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023582.1_4006010_4007177_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023582.1_4007141_4007993_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023582.1_4007977_4008244_-	NA	NA|57aa|down_9|NZ_CP023582.1_4008274_4008445_-	NA
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	19	3998574-3998951	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	3	62	3998598-3998618|3998598-3998618|3998598-3998618|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998643-3998663|3998688-3998708|3998688-3998708|3998688-3998708|3998688-3998708	NZ_CP023582.1_427069-427049|NZ_CP023582.1_427099-427079|NZ_CP023582.1_431398-431378|NZ_CP023582.1_2922842-2922862|NZ_CP023582.1_132299-132319|NZ_CP023582.1_336647-336627|NZ_CP023582.1_528191-528171|NZ_CP023582.1_673096-673076|NZ_CP023582.1_673105-673085|NZ_CP023582.1_673156-673136|NZ_CP023582.1_673165-673145|NZ_CP023582.1_673276-673256|NZ_CP023582.1_673999-673979|NZ_CP023582.1_836870-836890|NZ_CP023582.1_837878-837898|NZ_CP023582.1_839326-839346|NZ_CP023582.1_840661-840681|NZ_CP023582.1_927969-927949|NZ_CP023582.1_968579-968559|NZ_CP023582.1_1091934-1091954|NZ_CP023582.1_1188471-1188451|NZ_CP023582.1_1188525-1188505|NZ_CP023582.1_1385197-1385177|NZ_CP023582.1_1618315-1618295|NZ_CP023582.1_1633054-1633034|NZ_CP023582.1_1991124-1991104|NZ_CP023582.1_2088516-2088496|NZ_CP023582.1_2088987-2088967|NZ_CP023582.1_2803334-2803314|NZ_CP023582.1_2922944-2922964|NZ_CP023582.1_2960120-2960100|NZ_CP023582.1_3737872-3737852|NZ_CP023582.1_3738461-3738441|NZ_CP023582.1_3738479-3738459|NZ_CP023582.1_3738530-3738510|NZ_CP023582.1_3738581-3738561|NZ_CP023582.1_3738725-3738705|NZ_CP023582.1_3739646-3739626|NZ_CP023582.1_3739823-3739803|NZ_CP023582.1_3740399-3740379|NZ_CP023582.1_3779709-3779729|NZ_CP023582.1_3927004-3927024|NZ_CP023582.1_3927100-3927120|NZ_CP023582.1_3928096-3928116|NZ_CP023582.1_3928105-3928125|NZ_CP023582.1_3928114-3928134|NZ_CP023582.1_3928123-3928143|NZ_CP023582.1_3928132-3928152|NZ_CP023582.1_3928885-3928905|NZ_CP023582.1_3929080-3929100|NZ_CP023582.1_3936186-3936206|NZ_CP023582.1_3941036-3941056|NZ_CP023582.1_3941372-3941392|NZ_CP023582.1_3941718-3941738|NZ_CP023582.1_3942360-3942380|NZ_CP023582.1_3943572-3943592|NZ_CP023582.1_3943689-3943709|NZ_CP023582.1_3944136-3944156|NZ_CP023582.1_1262715-1262695|NZ_CP023582.1_427069-427049|NZ_CP023582.1_427099-427079|NZ_CP023582.1_431398-431378	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|89aa|down_8|NZ_CP023582.1_4007977_4008244_-,NA|57aa|down_9|NZ_CP023582.1_4008274_4008445_-	NA|305aa|up_9|NZ_CP023582.1_3987192_3988107_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NZ_CP023582.1_3988129_3988909_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NZ_CP023582.1_3988963_3989707_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NZ_CP023582.1_3989706_3990585_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NZ_CP023582.1_3990581_3991334_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NZ_CP023582.1_3991431_3992499_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NZ_CP023582.1_3992495_3994553_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NZ_CP023582.1_3994640_3995510_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NZ_CP023582.1_3995614_3996775_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NZ_CP023582.1_3996839_3997442_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NZ_CP023582.1_3999457_4000246_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NZ_CP023582.1_4000242_4001400_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NZ_CP023582.1_4001447_4002971_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NZ_CP023582.1_4002971_4004105_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NZ_CP023582.1_4004101_4005061_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NZ_CP023582.1_4005057_4006014_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NZ_CP023582.1_4006010_4007177_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NZ_CP023582.1_4007141_4007993_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NZ_CP023582.1_4007977_4008244_-	NA	NA|57aa|down_9|NZ_CP023582.1_4008274_4008445_-	NA
GCF_002447055.1_ASM244705v1	NZ_CP023582	Mycobacterium tuberculosis strain LN3756 chromosome, complete genome	20	4110481-4110569	13	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023582.1_4101067_4101838_-,NA|119aa|up_3|NZ_CP023582.1_4106972_4107329_+,NA|52aa|up_2|NZ_CP023582.1_4107428_4107584_+,NA|233aa|up_0|NZ_CP023582.1_4109585_4110284_-,NA|126aa|down_5|NZ_CP023582.1_4115800_4116178_+	NA|288aa|up_9|NZ_CP023582.1_4099449_4100313_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023582.1_4101067_4101838_-	NA	NA|549aa|up_7|NZ_CP023582.1_4101834_4103481_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023582.1_4103477_4104341_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023582.1_4104333_4105260_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023582.1_4105261_4106887_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023582.1_4106972_4107329_+	NA	NA|52aa|up_2|NZ_CP023582.1_4107428_4107584_+	NA	NA|652aa|up_1|NZ_CP023582.1_4107594_4109550_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023582.1_4109585_4110284_-	NA	NA|173aa|down_0|NZ_CP023582.1_4110629_4111148_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023582.1_4111148_4112132_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023582.1_4112124_4113318_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|228aa|down_3|NZ_CP023582.1_4114272_4114956_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_4|NZ_CP023582.1_4114955_4115693_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_5|NZ_CP023582.1_4115800_4116178_+	NA	NA|225aa|down_6|NZ_CP023582.1_4116276_4116951_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_7|NZ_CP023582.1_4117056_4117851_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_8|NZ_CP023582.1_4117857_4118313_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|54aa|down_9|NZ_CP023582.1_4118328_4118490_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)
