assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	1	366366-367064	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366654-366695|366729-366761	NZ_CP023576.1_374685-374726|NZ_CP023576.1_373500-373532	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023576.1_363378_363681_+,NA|161aa|down_1|NZ_CP023576.1_376474_376957_-,NA|410aa|down_5|NZ_CP023576.1_379073_380303_+	NA|262aa|up_9|NZ_CP023576.1_358073_358859_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023576.1_358847_359651_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023576.1_359660_361058_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023576.1_361236_363012_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023576.1_363154_363382_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023576.1_363378_363681_+	NA	NA|74aa|up_3|NZ_CP023576.1_363728_363950_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023576.1_363946_364372_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023576.1_364507_365140_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023576.1_365136_366045_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023576.1_375815_376487_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023576.1_376474_376957_-	NA	NA|239aa|down_2|NZ_CP023576.1_377014_377731_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023576.1_377832_378489_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023576.1_378558_379050_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023576.1_379073_380303_+	NA	NA|621aa|down_6|NZ_CP023576.1_380457_382320_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023576.1_382391_382778_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023576.1_382780_383443_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023576.1_383503_384388_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	2	631087-631224	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631105-631122|631105-631122|631189-631206	NZ_CP023576.1_22466-22483|NZ_CP023576.1_1411849-1411866|NZ_CP023576.1_973015-973032	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP023576.1_621925_622087_-,NA|478aa|up_0|NZ_CP023576.1_628102_629536_-,NA|450aa|down_2|NZ_CP023576.1_632859_634209_-,NA|93aa|down_5|NZ_CP023576.1_635739_636018_-	NA|325aa|up_9|NZ_CP023576.1_619695_620670_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP023576.1_620711_621929_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP023576.1_621925_622087_-	NA	NA|106aa|up_6|NZ_CP023576.1_622133_622451_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP023576.1_622597_624382_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP023576.1_624277_625285_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP023576.1_625366_626245_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP023576.1_626261_627056_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP023576.1_627052_628093_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP023576.1_628102_629536_-	NA	NA|211aa|down_0|NZ_CP023576.1_631547_632180_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP023576.1_632176_632839_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP023576.1_632859_634209_-	NA	NA|381aa|down_3|NZ_CP023576.1_634220_635363_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP023576.1_635377_635680_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP023576.1_635739_636018_-	NA	NA|418aa|down_6|NZ_CP023576.1_636014_637268_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP023576.1_637387_637774_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP023576.1_637836_638721_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP023576.1_638816_639719_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	3	691831-691907	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP023576.1_677726_678134_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP023576.1_678193_678880_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP023576.1_679033_681667_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP023576.1_681689_684077_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP023576.1_684214_684937_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP023576.1_684933_685731_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP023576.1_685732_686620_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP023576.1_686625_687840_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP023576.1_688863_690309_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP023576.1_690305_691742_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023576.1_693042_694593_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023576.1_694644_695037_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023576.1_695033_695291_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023576.1_695473_696709_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023576.1_696959_697373_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023576.1_697369_697606_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023576.1_697709_698216_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023576.1_698329_698800_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023576.1_698843_699605_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023576.1_699661_699973_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	4	926416-927363	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927199-927234|927199-927234|927199-927234	NZ_CP023576.1_674933-674898|NZ_CP023576.1_1213529-1213564|NZ_CP023576.1_2423539-2423504	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023576.1_931364_931916_-,NA|81aa|down_8|NZ_CP023576.1_937379_937622_+	NA|685aa|up_9|NZ_CP023576.1_914052_916107_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023576.1_916272_917442_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023576.1_917529_918546_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023576.1_918707_919349_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023576.1_919429_920485_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023576.1_920536_920929_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023576.1_920986_921409_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023576.1_921370_921661_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023576.1_921765_922671_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023576.1_922689_923505_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP023576.1_927632_930272_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023576.1_930739_931384_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023576.1_931364_931916_-	NA	NA|218aa|down_3|NZ_CP023576.1_932065_932719_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023576.1_932789_933818_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023576.1_934506_935277_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023576.1_935363_936176_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023576.1_936243_937104_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023576.1_937379_937622_+	NA	NA|431aa|down_9|NZ_CP023576.1_937898_939191_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	5	1191096-1191204	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023576.1_1180463_1182095_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023576.1_1182170_1183235_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023576.1_1183287_1183761_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023576.1_1183794_1184658_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023576.1_1184662_1185520_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023576.1_1185520_1186603_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023576.1_1186683_1187103_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023576.1_1187214_1187781_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023576.1_1187777_1188173_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023576.1_1188200_1190204_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023576.1_1192289_1194053_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023576.1_1194049_1194823_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023576.1_1194834_1195872_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023576.1_1196058_1196895_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023576.1_1197010_1197862_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023576.1_1197935_1199153_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023576.1_1199205_1200150_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023576.1_1200372_1201440_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023576.1_1201496_1202891_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023576.1_1203092_1203815_+	pfam06271, RDD, RDD family
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	6	1211730-1212586	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	74	1212113-1212134|1212113-1212134|1212158-1212173|1212296-1212317|1212296-1212317|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431|1212413-1212431	NZ_CP023576.1_362568-362589|NZ_CP023576.1_2960288-2960267|NZ_CP023576.1_2088425-2088410|NZ_CP023576.1_837231-837252|NZ_CP023576.1_1217424-1217445|NZ_CP023576.1_674597-674579|NZ_CP023576.1_1213256-1213274|NZ_CP023576.1_1217397-1217415|NZ_CP023576.1_1217469-1217487|NZ_CP023576.1_1630486-1630468|NZ_CP023576.1_1633312-1633294|NZ_CP023576.1_1990621-1990603|NZ_CP023576.1_2061352-2061334|NZ_CP023576.1_2061799-2061781|NZ_CP023576.1_2061898-2061880|NZ_CP023576.1_2801834-2801816|NZ_CP023576.1_2805362-2805344|NZ_CP023576.1_1636707-1636689|NZ_CP023576.1_150134-150152|NZ_CP023576.1_150287-150305|NZ_CP023576.1_333736-333718|NZ_CP023576.1_335155-335137|NZ_CP023576.1_335608-335590|NZ_CP023576.1_335659-335641|NZ_CP023576.1_335668-335650|NZ_CP023576.1_337906-337888|NZ_CP023576.1_338035-338017|NZ_CP023576.1_338302-338284|NZ_CP023576.1_338331-338349|NZ_CP023576.1_338425-338407|NZ_CP023576.1_362956-362938|NZ_CP023576.1_443273-443255|NZ_CP023576.1_546617-546599|NZ_CP023576.1_623788-623806|NZ_CP023576.1_624010-624028|NZ_CP023576.1_673763-673745|NZ_CP023576.1_839966-839984|NZ_CP023576.1_840012-840030|NZ_CP023576.1_1090758-1090776|NZ_CP023576.1_1091406-1091424|NZ_CP023576.1_1095465-1095447|NZ_CP023576.1_1212785-1212803|NZ_CP023576.1_1213175-1213193|NZ_CP023576.1_1217817-1217835|NZ_CP023576.1_1488993-1488975|NZ_CP023576.1_1618450-1618432|NZ_CP023576.1_1618903-1618885|NZ_CP023576.1_1635825-1635807|NZ_CP023576.1_1635834-1635816|NZ_CP023576.1_1864113-1864095|NZ_CP023576.1_1864641-1864623|NZ_CP023576.1_1989895-1989877|NZ_CP023576.1_2001256-2001274|NZ_CP023576.1_2088623-2088605|NZ_CP023576.1_2303302-2303284|NZ_CP023576.1_2356749-2356731|NZ_CP023576.1_2419365-2419383|NZ_CP023576.1_2423452-2423434|NZ_CP023576.1_2568948-2568930|NZ_CP023576.1_2693225-2693243|NZ_CP023576.1_2795149-2795131|NZ_CP023576.1_2795731-2795713|NZ_CP023576.1_3054324-3054342|NZ_CP023576.1_3054423-3054441|NZ_CP023576.1_3705225-3705243|NZ_CP023576.1_3737202-3737184|NZ_CP023576.1_3802047-3802065|NZ_CP023576.1_3802230-3802248|NZ_CP023576.1_3802398-3802416|NZ_CP023576.1_3930211-3930229|NZ_CP023576.1_3931941-3931959|NZ_CP023576.1_3940441-3940459|NZ_CP023576.1_4031410-4031392|NZ_CP023576.1_4093927-4093945	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023576.1_1207162_1207429_+,NA|61aa|down_3|NZ_CP023576.1_1215004_1215187_+,NA|35aa|down_4|NZ_CP023576.1_1215296_1215401_+	NA|465aa|up_9|NZ_CP023576.1_1201496_1202891_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023576.1_1203092_1203815_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023576.1_1203846_1205013_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023576.1_1205083_1205578_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023576.1_1205763_1206198_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023576.1_1206299_1207166_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023576.1_1207162_1207429_+	NA	NA|674aa|up_2|NZ_CP023576.1_1207415_1209437_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023576.1_1209535_1210264_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023576.1_1210374_1211163_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023576.1_1213819_1214140_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023576.1_1214292_1214727_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP023576.1_1214825_1214993_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023576.1_1215004_1215187_+	NA	NA|35aa|down_4|NZ_CP023576.1_1215296_1215401_+	NA	NA|152aa|down_5|NZ_CP023576.1_1215378_1215834_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023576.1_1216248_1218810_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023576.1_1219027_1219966_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023576.1_1220353_1221634_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023576.1_1221738_1222566_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	7	1571968-1573040	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023576.1_1563731_1564049_+,NA	NA|103aa|up_9|NZ_CP023576.1_1561246_1561555_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023576.1_1561551_1563171_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023576.1_1563731_1564049_+	NA	NA|209aa|up_6|NZ_CP023576.1_1564183_1564810_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023576.1_1564875_1565208_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023576.1_1565223_1566480_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023576.1_1566607_1567819_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023576.1_1567891_1569370_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023576.1_1569366_1570752_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023576.1_1570829_1571864_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023576.1_1573893_1574295_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023576.1_1574291_1574549_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023576.1_1574631_1575591_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023576.1_1575615_1576578_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023576.1_1576711_1577314_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023576.1_1577394_1579362_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023576.1_1579379_1580204_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023576.1_1580372_1580855_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023576.1_1580926_1581751_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023576.1_1581947_1582886_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	8	2088095-2088349	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088176-2088193|2088176-2088193|2088266-2088283	NZ_CP023576.1_400981-400964|NZ_CP023576.1_607243-607226|NZ_CP023576.1_3449920-3449903	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023576.1_2087454_2087718_-,NA	NA|248aa|up_9|NZ_CP023576.1_2072885_2073629_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NZ_CP023576.1_2073747_2074242_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_7|NZ_CP023576.1_2074645_2075323_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_6|NZ_CP023576.1_2075681_2078507_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_5|NZ_CP023576.1_2078733_2079594_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_4|NZ_CP023576.1_2079634_2080501_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_3|NZ_CP023576.1_2082408_2084442_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023576.1_2084561_2086787_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023576.1_2087062_2087458_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023576.1_2087454_2087718_-	NA	NA|346aa|down_0|NZ_CP023576.1_2089486_2090524_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023576.1_2090523_2091891_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023576.1_2092064_2093501_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023576.1_2093536_2094988_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023576.1_2095017_2095968_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023576.1_2095982_2096399_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023576.1_2096676_2097099_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023576.1_2097147_2097450_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023576.1_2097446_2097761_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023576.1_2097760_2099494_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	9	2163188-2163292	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP023576.1_2152235_2152706_-,NA|136aa|up_1|NZ_CP023576.1_2159731_2160139_-,NA|127aa|down_6|NZ_CP023576.1_2176361_2176742_-	NA|157aa|up_9|NZ_CP023576.1_2152235_2152706_-	NA	NA|216aa|up_8|NZ_CP023576.1_2153045_2153693_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP023576.1_2153699_2155922_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP023576.1_2155959_2156403_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP023576.1_2156516_2157110_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP023576.1_2157192_2157798_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP023576.1_2157897_2158902_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP023576.1_2159001_2159754_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP023576.1_2159731_2160139_-	NA	NA|767aa|up_0|NZ_CP023576.1_2160273_2162574_+	PLN02892, PLN02892, isocitrate lyase	NA|988aa|down_0|NZ_CP023576.1_2167460_2170424_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023576.1_2170872_2171337_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023576.1_2171434_2172298_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023576.1_2172335_2173607_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023576.1_2173878_2174994_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023576.1_2174984_2176325_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023576.1_2176361_2176742_-	NA	NA|621aa|down_7|NZ_CP023576.1_2176898_2178761_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023576.1_2178768_2179248_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023576.1_2179484_2180258_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	10	2168626-2168845	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023576.1_2159731_2160139_-,NA|127aa|down_5|NZ_CP023576.1_2176361_2176742_-	NA|216aa|up_9|NZ_CP023576.1_2153045_2153693_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023576.1_2153699_2155922_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023576.1_2155959_2156403_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023576.1_2156516_2157110_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023576.1_2157192_2157798_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023576.1_2157897_2158902_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023576.1_2159001_2159754_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023576.1_2159731_2160139_-	NA	NA|767aa|up_1|NZ_CP023576.1_2160273_2162574_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP023576.1_2162743_2167123_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023576.1_2170872_2171337_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023576.1_2171434_2172298_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023576.1_2172335_2173607_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023576.1_2173878_2174994_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023576.1_2174984_2176325_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023576.1_2176361_2176742_-	NA	NA|621aa|down_6|NZ_CP023576.1_2176898_2178761_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023576.1_2178768_2179248_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023576.1_2179484_2180258_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP023576.1_2181051_2181696_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	11	3118912-3120266	1,8,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023576.1_3112191_3112446_-,NA|135aa|up_7|NZ_CP023576.1_3112593_3112998_+,NA|64aa|up_6|NZ_CP023576.1_3112994_3113186_+,NA|86aa|up_4|NZ_CP023576.1_3114772_3115030_+,NA|104aa|up_3|NZ_CP023576.1_3115134_3115446_+,NA|203aa|up_2|NZ_CP023576.1_3115865_3116474_+,NA	NA|92aa|up_9|NZ_CP023576.1_3111740_3112016_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023576.1_3112191_3112446_-	NA	NA|135aa|up_7|NZ_CP023576.1_3112593_3112998_+	NA	NA|64aa|up_6|NZ_CP023576.1_3112994_3113186_+	NA	NA|385aa|up_5|NZ_CP023576.1_3113384_3114539_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023576.1_3114772_3115030_+	NA	NA|104aa|up_3|NZ_CP023576.1_3115134_3115446_+	NA	NA|203aa|up_2|NZ_CP023576.1_3115865_3116474_+	NA	NA|470aa|up_1|NZ_CP023576.1_3116544_3117954_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023576.1_3117950_3118763_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023576.1_3120292_3121554_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023576.1_3123351_3123693_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023576.1_3123693_3124710_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023576.1_3124722_3125871_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023576.1_3125966_3127094_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023576.1_3127090_3127999_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023576.1_3127979_3128690_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023576.1_3128699_3129074_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023576.1_3129070_3131509_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023576.1_3131505_3132228_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	12	3121589-3123303	9,5,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023576.1_3112191_3112446_-,NA|135aa|up_8|NZ_CP023576.1_3112593_3112998_+,NA|64aa|up_7|NZ_CP023576.1_3112994_3113186_+,NA|86aa|up_5|NZ_CP023576.1_3114772_3115030_+,NA|104aa|up_4|NZ_CP023576.1_3115134_3115446_+,NA|203aa|up_3|NZ_CP023576.1_3115865_3116474_+,NA	NA|85aa|up_9|NZ_CP023576.1_3112191_3112446_-	NA	NA|135aa|up_8|NZ_CP023576.1_3112593_3112998_+	NA	NA|64aa|up_7|NZ_CP023576.1_3112994_3113186_+	NA	NA|385aa|up_6|NZ_CP023576.1_3113384_3114539_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023576.1_3114772_3115030_+	NA	NA|104aa|up_4|NZ_CP023576.1_3115134_3115446_+	NA	NA|203aa|up_3|NZ_CP023576.1_3115865_3116474_+	NA	NA|470aa|up_2|NZ_CP023576.1_3116544_3117954_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023576.1_3117950_3118763_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023576.1_3120292_3121554_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023576.1_3123351_3123693_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023576.1_3123693_3124710_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023576.1_3124722_3125871_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023576.1_3125966_3127094_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023576.1_3127090_3127999_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023576.1_3127979_3128690_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023576.1_3128699_3129074_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023576.1_3129070_3131509_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023576.1_3131505_3132228_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023576.1_3132627_3133173_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	13	3737570-3739976	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGNNGCCGCCGNNGCCGCCGN	21	4	202	3737588-3737608|3737588-3737608|3737588-3737608|3737588-3737608|3737588-3737608|3738041-3738058|3738041-3738058|3738041-3738058|3738041-3738058|3738041-3738058|3738041-3738058|3738041-3738058|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739173-3739190|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703|3739686-3739703	NZ_CP023576.1_1218544-1218524|NZ_CP023576.1_1385347-1385367|NZ_CP023576.1_1631694-1631714|NZ_CP023576.1_2423721-2423741|NZ_CP023576.1_3929390-3929370|NZ_CP023576.1_3054397-3054380|NZ_CP023576.1_131829-131812|NZ_CP023576.1_673957-673974|NZ_CP023576.1_1618125-1618142|NZ_CP023576.1_2802799-2802816|NZ_CP023576.1_2803276-2803293|NZ_CP023576.1_3737543-3737560|NZ_CP023576.1_337089-337106|NZ_CP023576.1_362464-362447|NZ_CP023576.1_381950-381967|NZ_CP023576.1_623750-623733|NZ_CP023576.1_624128-624111|NZ_CP023576.1_624137-624120|NZ_CP023576.1_674944-674961|NZ_CP023576.1_839595-839578|NZ_CP023576.1_840301-840284|NZ_CP023576.1_1216843-1216826|NZ_CP023576.1_1217629-1217612|NZ_CP023576.1_1384990-1385007|NZ_CP023576.1_1633152-1633169|NZ_CP023576.1_1655708-1655725|NZ_CP023576.1_1864055-1864072|NZ_CP023576.1_2423823-2423840|NZ_CP023576.1_2804125-2804142|NZ_CP023576.1_3054406-3054389|NZ_CP023576.1_3741528-3741545|NZ_CP023576.1_3741867-3741884|NZ_CP023576.1_3801973-3801956|NZ_CP023576.1_3802705-3802688|NZ_CP023576.1_3802762-3802745|NZ_CP023576.1_3934791-3934774|NZ_CP023576.1_3935406-3935389|NZ_CP023576.1_3936021-3936004|NZ_CP023576.1_3941117-3941100|NZ_CP023576.1_3941454-3941437|NZ_CP023576.1_3946664-3946647|NZ_CP023576.1_3947006-3946989|NZ_CP023576.1_3947357-3947340|NZ_CP023576.1_3947948-3947931|NZ_CP023576.1_333539-333556|NZ_CP023576.1_336576-336593|NZ_CP023576.1_672949-672966|NZ_CP023576.1_672958-672975|NZ_CP023576.1_673009-673026|NZ_CP023576.1_673018-673035|NZ_CP023576.1_673120-673137|NZ_CP023576.1_673129-673146|NZ_CP023576.1_673852-673869|NZ_CP023576.1_837760-837743|NZ_CP023576.1_839208-839191|NZ_CP023576.1_840541-840524|NZ_CP023576.1_968411-968428|NZ_CP023576.1_1188305-1188322|NZ_CP023576.1_1188359-1188376|NZ_CP023576.1_1385074-1385091|NZ_CP023576.1_1618197-1618214|NZ_CP023576.1_1630794-1630811|NZ_CP023576.1_1632954-1632971|NZ_CP023576.1_1655519-1655536|NZ_CP023576.1_1991028-1991045|NZ_CP023576.1_2061060-2061077|NZ_CP023576.1_2088430-2088447|NZ_CP023576.1_2088901-2088918|NZ_CP023576.1_2795652-2795669|NZ_CP023576.1_2922775-2922758|NZ_CP023576.1_2922841-2922824|NZ_CP023576.1_2959981-2959998|NZ_CP023576.1_3055123-3055106|NZ_CP023576.1_3740271-3740288|NZ_CP023576.1_3778735-3778718|NZ_CP023576.1_3779617-3779600|NZ_CP023576.1_3926903-3926886|NZ_CP023576.1_3926999-3926982|NZ_CP023576.1_3927995-3927978|NZ_CP023576.1_3928004-3927987|NZ_CP023576.1_3928013-3927996|NZ_CP023576.1_3928022-3928005|NZ_CP023576.1_3928031-3928014|NZ_CP023576.1_3928880-3928863|NZ_CP023576.1_3928970-3928953|NZ_CP023576.1_3929657-3929640|NZ_CP023576.1_3940937-3940920|NZ_CP023576.1_3941273-3941256|NZ_CP023576.1_3941619-3941602|NZ_CP023576.1_3942261-3942244|NZ_CP023576.1_3943473-3943456|NZ_CP023576.1_3943536-3943519|NZ_CP023576.1_3943563-3943546|NZ_CP023576.1_3944037-3944020|NZ_CP023576.1_3944274-3944257|NZ_CP023576.1_334338-334355|NZ_CP023576.1_334920-334937|NZ_CP023576.1_336891-336908|NZ_CP023576.1_336900-336917|NZ_CP023576.1_337437-337454|NZ_CP023576.1_361882-361865|NZ_CP023576.1_362320-362303|NZ_CP023576.1_362380-362363|NZ_CP023576.1_623291-623274|NZ_CP023576.1_672904-672921|NZ_CP023576.1_673219-673236|NZ_CP023576.1_837769-837752|NZ_CP023576.1_839298-839281|NZ_CP023576.1_927701-927718|NZ_CP023576.1_928571-928588|NZ_CP023576.1_928580-928597|NZ_CP023576.1_968897-968914|NZ_CP023576.1_1091794-1091777|NZ_CP023576.1_1091965-1091948|NZ_CP023576.1_1091974-1091957|NZ_CP023576.1_1188434-1188451|NZ_CP023576.1_1190641-1190658|NZ_CP023576.1_1190749-1190766|NZ_CP023576.1_1190839-1190856|NZ_CP023576.1_1190848-1190865|NZ_CP023576.1_1217878-1217861|NZ_CP023576.1_1217905-1217888|NZ_CP023576.1_1218028-1218011|NZ_CP023576.1_1263089-1263106|NZ_CP023576.1_1385005-1385022|NZ_CP023576.1_1385083-1385100|NZ_CP023576.1_1618569-1618586|NZ_CP023576.1_1618635-1618652|NZ_CP023576.1_1631022-1631039|NZ_CP023576.1_1631217-1631234|NZ_CP023576.1_1631403-1631420|NZ_CP023576.1_1631412-1631429|NZ_CP023576.1_1631868-1631885|NZ_CP023576.1_1631877-1631894|NZ_CP023576.1_1631895-1631912|NZ_CP023576.1_1631934-1631951|NZ_CP023576.1_1632099-1632116|NZ_CP023576.1_1632303-1632320|NZ_CP023576.1_1632507-1632524|NZ_CP023576.1_1632564-1632581|NZ_CP023576.1_1632573-1632590|NZ_CP023576.1_1632879-1632896|NZ_CP023576.1_1636070-1636087|NZ_CP023576.1_1636499-1636516|NZ_CP023576.1_1636592-1636609|NZ_CP023576.1_1655510-1655527|NZ_CP023576.1_1863305-1863322|NZ_CP023576.1_2045519-2045536|NZ_CP023576.1_2423490-2423507|NZ_CP023576.1_2693520-2693503|NZ_CP023576.1_2795268-2795285|NZ_CP023576.1_2796177-2796194|NZ_CP023576.1_2796483-2796500|NZ_CP023576.1_2922739-2922722|NZ_CP023576.1_2943956-2943973|NZ_CP023576.1_3055036-3055019|NZ_CP023576.1_3055087-3055070|NZ_CP023576.1_3737408-3737425|NZ_CP023576.1_3779107-3779090|NZ_CP023576.1_3779515-3779498|NZ_CP023576.1_3779626-3779609|NZ_CP023576.1_3801817-3801800|NZ_CP023576.1_3802078-3802061|NZ_CP023576.1_3802087-3802070|NZ_CP023576.1_3803065-3803048|NZ_CP023576.1_3803119-3803102|NZ_CP023576.1_3926810-3926793|NZ_CP023576.1_3926894-3926877|NZ_CP023576.1_3926990-3926973|NZ_CP023576.1_3927833-3927816|NZ_CP023576.1_3927986-3927969|NZ_CP023576.1_3928952-3928935|NZ_CP023576.1_3929786-3929769|NZ_CP023576.1_3930008-3929991|NZ_CP023576.1_3930062-3930045|NZ_CP023576.1_3930170-3930153|NZ_CP023576.1_3930365-3930348|NZ_CP023576.1_3933540-3933523|NZ_CP023576.1_3933837-3933820|NZ_CP023576.1_3934143-3934126|NZ_CP023576.1_3934812-3934795|NZ_CP023576.1_3935427-3935410|NZ_CP023576.1_3936267-3936250|NZ_CP023576.1_3936276-3936259|NZ_CP023576.1_3940295-3940278|NZ_CP023576.1_3940793-3940776|NZ_CP023576.1_3940946-3940929|NZ_CP023576.1_3941048-3941031|NZ_CP023576.1_3941138-3941121|NZ_CP023576.1_3941282-3941265|NZ_CP023576.1_3941384-3941367|NZ_CP023576.1_3941475-3941458|NZ_CP023576.1_3941628-3941611|NZ_CP023576.1_3941712-3941695|NZ_CP023576.1_3942420-3942403|NZ_CP023576.1_3942498-3942481|NZ_CP023576.1_3942570-3942553|NZ_CP023576.1_3943482-3943465|NZ_CP023576.1_3943545-3943528|NZ_CP023576.1_3943554-3943537|NZ_CP023576.1_3943728-3943711|NZ_CP023576.1_3943965-3943948	NA	43	43	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023576.1_3755020_3755308_-,NA|87aa|down_9|NZ_CP023576.1_3768428_3768689_-	NA|282aa|up_9|NZ_CP023576.1_3719647_3720493_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023576.1_3720967_3721408_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023576.1_3721441_3722311_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023576.1_3722331_3723342_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023576.1_3723626_3724259_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023576.1_3724325_3725555_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023576.1_3725837_3727187_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023576.1_3727198_3728338_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023576.1_3728334_3729066_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023576.1_3729074_3736646_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023576.1_3742890_3743148_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023576.1_3743403_3752877_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023576.1_3753502_3753949_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023576.1_3753985_3754726_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023576.1_3755020_3755308_-	NA	NA|3717aa|down_5|NZ_CP023576.1_3755644_3766795_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023576.1_3767038_3767833_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023576.1_3767914_3768286_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023576.1_3768183_3768402_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023576.1_3768428_3768689_-	NA
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	14	3740396-3740937	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023576.1_3755020_3755308_-,NA|87aa|down_9|NZ_CP023576.1_3768428_3768689_-	NA|282aa|up_9|NZ_CP023576.1_3719647_3720493_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023576.1_3720967_3721408_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023576.1_3721441_3722311_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023576.1_3722331_3723342_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023576.1_3723626_3724259_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023576.1_3724325_3725555_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023576.1_3725837_3727187_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023576.1_3727198_3728338_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023576.1_3728334_3729066_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023576.1_3729074_3736646_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023576.1_3742890_3743148_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023576.1_3743403_3752877_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023576.1_3753502_3753949_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023576.1_3753985_3754726_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023576.1_3755020_3755308_-	NA	NA|3717aa|down_5|NZ_CP023576.1_3755644_3766795_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023576.1_3767038_3767833_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023576.1_3767914_3768286_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023576.1_3768183_3768402_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023576.1_3768428_3768689_-	NA
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	15	3948040-3949791	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGG	36	2	9	3948631-3948666|3948631-3948666|3948631-3948666|3948631-3948666|3948631-3948666|3949522-3949548|3949522-3949548|3949522-3949548|3949522-3949548	NZ_CP023576.1_3946747-3946782|NZ_CP023576.1_3947089-3947124|NZ_CP023576.1_3947680-3947715|NZ_CP023576.1_3948031-3948066|NZ_CP023576.1_3932496-3932531|NZ_CP023576.1_361896-361922|NZ_CP023576.1_3940942-3940968|NZ_CP023576.1_3941278-3941304|NZ_CP023576.1_3941624-3941650	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP023576.1_3953106_3953946_+	NA|255aa|up_9|NZ_CP023576.1_3919788_3920553_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NZ_CP023576.1_3920778_3921732_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NZ_CP023576.1_3921756_3921948_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NZ_CP023576.1_3922162_3923365_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_5|NZ_CP023576.1_3923389_3924511_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_4|NZ_CP023576.1_3924581_3926090_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_3|NZ_CP023576.1_3926260_3930406_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP023576.1_3936561_3938109_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP023576.1_3938105_3938942_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP023576.1_3944767_3945424_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP023576.1_3950499_3952146_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP023576.1_3952219_3953011_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP023576.1_3953106_3953946_+	NA	NA|399aa|down_3|NZ_CP023576.1_3954000_3955197_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP023576.1_3955225_3955936_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP023576.1_3956000_3957044_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP023576.1_3957196_3958108_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP023576.1_3958123_3959188_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP023576.1_3959204_3960389_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP023576.1_3960430_3961462_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	16	4110344-4110432	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023576.1_4100930_4101701_-,NA|119aa|up_3|NZ_CP023576.1_4106835_4107192_+,NA|52aa|up_2|NZ_CP023576.1_4107291_4107447_+,NA|233aa|up_0|NZ_CP023576.1_4109448_4110147_-,NA|126aa|down_6|NZ_CP023576.1_4115667_4116045_+	NA|288aa|up_9|NZ_CP023576.1_4099312_4100176_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023576.1_4100930_4101701_-	NA	NA|549aa|up_7|NZ_CP023576.1_4101697_4103344_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023576.1_4103340_4104204_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023576.1_4104196_4105123_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023576.1_4105124_4106750_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023576.1_4106835_4107192_+	NA	NA|52aa|up_2|NZ_CP023576.1_4107291_4107447_+	NA	NA|652aa|up_1|NZ_CP023576.1_4107457_4109413_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023576.1_4109448_4110147_-	NA	NA|173aa|down_0|NZ_CP023576.1_4110492_4111011_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023576.1_4111011_4111995_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023576.1_4111987_4113181_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023576.1_4113186_4114008_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023576.1_4114139_4114823_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023576.1_4114822_4115560_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023576.1_4115667_4116045_+	NA	NA|225aa|down_7|NZ_CP023576.1_4116143_4116818_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023576.1_4116921_4117716_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023576.1_4117722_4118178_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_002446935.1_ASM244693v1	NZ_CP023576	Mycobacterium tuberculosis strain CSV10399 chromosome, complete genome	17	4348409-4348487	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AAGCGCAGCGATGAGGAGGAGCGGCGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|109aa|up_9|NZ_CP023576.1_4337610_4337937_+,NA|117aa|up_8|NZ_CP023576.1_4337835_4338186_-,NA|184aa|up_3|NZ_CP023576.1_4342433_4342985_+,NA|281aa|down_7|NZ_CP023576.1_4356355_4357198_+	NA|109aa|up_9|NZ_CP023576.1_4337610_4337937_+	NA	NA|117aa|up_8|NZ_CP023576.1_4337835_4338186_-	NA	NA|393aa|up_7|NZ_CP023576.1_4338512_4339691_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|403aa|up_6|NZ_CP023576.1_4339933_4341142_+	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional	NA|104aa|up_5|NZ_CP023576.1_4341229_4341541_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|284aa|up_4|NZ_CP023576.1_4341543_4342395_+	pfam14011, ESX-1_EspG, EspG family	NA|184aa|up_3|NZ_CP023576.1_4342433_4342985_+	NA	NA|574aa|up_2|NZ_CP023576.1_4342977_4344699_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|481aa|up_1|NZ_CP023576.1_4344702_4346145_+	TIGR03919, putative_membrane_protein, type VII secretion protein EccB, Actinobacterial	NA|748aa|up_0|NZ_CP023576.1_4346144_4348388_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|592aa|down_0|NZ_CP023576.1_4348489_4350265_+	TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb	NA|99aa|down_1|NZ_CP023576.1_4350407_4350704_+	pfam00934, PE, PE family	NA|369aa|down_2|NZ_CP023576.1_4350737_4351844_+	pfam00823, PPE, PPE family	NA|101aa|down_3|NZ_CP023576.1_4351936_4352239_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|96aa|down_4|NZ_CP023576.1_4352271_4352559_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|667aa|down_5|NZ_CP023576.1_4352672_4354673_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|512aa|down_6|NZ_CP023576.1_4354669_4356205_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|281aa|down_7|NZ_CP023576.1_4356355_4357198_+	NA	NA|724aa|down_8|NZ_CP023576.1_4357255_4359427_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|116aa|down_9|NZ_CP023576.1_4359843_4360191_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family
