The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023574	Mycobacterium tuberculosis strain CSV4644 chromosome, complete genome	4411271	2940996	2976362	4411271	head,terminase,protease,capsid,transposase,integrase,tRNA	Tupanvirus(11.11%)	41	2969797:2969824	2980779:2980806
WP_003413486.1|2940996_2943075_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943183_2943411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943407_2944793_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945137_2945638_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945654_2946095_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946241_2946919_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2946903_2947257_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947269_2947695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947691_2948366_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948443_2949265_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949400_2950294_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950296_2951115_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951129_2952311_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952369_2952801_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953314_2954556_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954865_2955228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955574_2956699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956700_2957240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957379_2958678_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958716_2958998_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959142_2959628_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959654_2959912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2959912_2962249_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962277_2962520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962520_2963198_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963393_2964050_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964212_2964659_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964833_2965166_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965285_2965645_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965746_2966205_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966340_2966721_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966717_2968214_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968403_2968640_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968712_2968886_+	hypothetical protein	NA	NA	NA	NA	NA
2969797:2969824	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2969930_2970362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970358_2971357_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971370_2971835_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2971967_2973228_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973602_2975042_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975049_2975583_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975735_2976362_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980779:2980806	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP023574	Mycobacterium tuberculosis strain CSV4644 chromosome, complete genome	4411271	3710229	3796113	4411271	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710229_3711490_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711545_3711707_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_096863749.1|3711728_3713258_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713190_3714129_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714137_3715505_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715573_3716791_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716886_3718395_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718391_3719543_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719733_3720579_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721053_3721494_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721527_3722397_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722417_3723428_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723712_3724345_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724411_3725641_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725923_3727273_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727284_3728424_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728420_3729152_+	methyltransferase	NA	NA	NA	NA	NA
WP_096863751.1|3729160_3736732_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3742949_3743207_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743462_3752936_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753561_3754008_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754044_3754785_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755079_3755367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755703_3766854_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767097_3767892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3767973_3768345_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768242_3768461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768487_3768748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3768862_3769252_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769265_3769559_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769555_3770401_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770524_3770800_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770796_3771054_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771095_3772286_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772402_3772771_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772767_3773319_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773325_3773907_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3773887_3774256_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774233_3774626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774622_3777253_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777488_3777953_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778319_3780086_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780086_3780731_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780729_3781164_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781252_3784492_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784683_3786024_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786065_3787241_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787294_3787399_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787477_3788119_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788119_3788368_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788372_3789800_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3789907_3790561_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790599_3792105_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792109_3793000_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793008_3794619_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794563_3794809_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3794851_3796113_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
