assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	1	366451-367149	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366739-366780|366814-366846	NZ_CP023573.1_374770-374811|NZ_CP023573.1_373585-373617	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP023573.1_363463_363766_+,NA|161aa|down_1|NZ_CP023573.1_376559_377042_-,NA|410aa|down_5|NZ_CP023573.1_379158_380388_+	NA|262aa|up_9|NZ_CP023573.1_358158_358944_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP023573.1_358932_359736_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP023573.1_359745_361143_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP023573.1_361321_363097_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP023573.1_363239_363467_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP023573.1_363463_363766_+	NA	NA|74aa|up_3|NZ_CP023573.1_363813_364035_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP023573.1_364031_364457_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP023573.1_364592_365225_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP023573.1_365221_366130_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP023573.1_375900_376572_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP023573.1_376559_377042_-	NA	NA|239aa|down_2|NZ_CP023573.1_377099_377816_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP023573.1_377917_378574_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP023573.1_378643_379135_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP023573.1_379158_380388_+	NA	NA|621aa|down_6|NZ_CP023573.1_380542_382405_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP023573.1_382476_382863_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP023573.1_382865_383528_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP023573.1_383588_384473_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	2	691897-691973	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP023573.1_677581_677797_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP023573.1_677793_678201_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP023573.1_678260_678947_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP023573.1_679100_681734_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP023573.1_681756_684144_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP023573.1_684281_685004_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP023573.1_685000_685798_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP023573.1_685799_686687_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP023573.1_686692_687907_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP023573.1_688930_690376_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP023573.1_693108_694659_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP023573.1_694710_695103_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP023573.1_695099_695357_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP023573.1_695539_696775_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP023573.1_697025_697439_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP023573.1_697435_697672_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP023573.1_697775_698282_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP023573.1_698395_698866_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP023573.1_698909_699671_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP023573.1_699727_700039_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	3	926491-927438	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927274-927309|927274-927309|927274-927309	NZ_CP023573.1_675000-674965|NZ_CP023573.1_1213598-1213633|NZ_CP023573.1_2423561-2423526	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP023573.1_931448_932000_-,NA|81aa|down_8|NZ_CP023573.1_937463_937706_+	NA|685aa|up_9|NZ_CP023573.1_914127_916182_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP023573.1_916347_917517_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP023573.1_917604_918621_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP023573.1_918782_919424_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP023573.1_919504_920560_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP023573.1_920611_921004_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP023573.1_921061_921484_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP023573.1_921445_921736_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP023573.1_921840_922746_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP023573.1_922764_923580_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP023573.1_927707_930356_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP023573.1_930823_931468_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP023573.1_931448_932000_-	NA	NA|218aa|down_3|NZ_CP023573.1_932149_932803_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP023573.1_932873_933902_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP023573.1_934590_935361_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP023573.1_935447_936260_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP023573.1_936327_937188_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP023573.1_937463_937706_+	NA	NA|431aa|down_9|NZ_CP023573.1_937982_939275_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	4	1191165-1191273	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP023573.1_1180532_1182164_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP023573.1_1182239_1183304_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP023573.1_1183356_1183830_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP023573.1_1183863_1184727_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP023573.1_1184731_1185589_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP023573.1_1185589_1186672_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP023573.1_1186752_1187172_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP023573.1_1187283_1187850_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP023573.1_1187846_1188242_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP023573.1_1188269_1190273_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP023573.1_1192358_1194122_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP023573.1_1194118_1194892_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP023573.1_1194903_1195941_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP023573.1_1196127_1196964_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP023573.1_1197079_1197931_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP023573.1_1198004_1199222_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP023573.1_1199274_1200219_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP023573.1_1200441_1201509_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP023573.1_1201565_1202960_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP023573.1_1203161_1203884_+	pfam06271, RDD, RDD family
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	5	1211799-1212655	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	75	1212182-1212203|1212227-1212242|1212365-1212386|1212365-1212386|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500|1212482-1212500	NZ_CP023573.1_2960327-2960306|NZ_CP023573.1_2088445-2088430|NZ_CP023573.1_837306-837327|NZ_CP023573.1_1217493-1217514|NZ_CP023573.1_674664-674646|NZ_CP023573.1_1213325-1213343|NZ_CP023573.1_1217466-1217484|NZ_CP023573.1_1217538-1217556|NZ_CP023573.1_1630552-1630534|NZ_CP023573.1_1633378-1633360|NZ_CP023573.1_1990648-1990630|NZ_CP023573.1_2061373-2061355|NZ_CP023573.1_2061820-2061802|NZ_CP023573.1_2061919-2061901|NZ_CP023573.1_2801876-2801858|NZ_CP023573.1_2805404-2805386|NZ_CP023573.1_1636773-1636755|NZ_CP023573.1_150188-150206|NZ_CP023573.1_333788-333770|NZ_CP023573.1_335207-335189|NZ_CP023573.1_335660-335642|NZ_CP023573.1_335711-335693|NZ_CP023573.1_335720-335702|NZ_CP023573.1_337991-337973|NZ_CP023573.1_338120-338102|NZ_CP023573.1_338387-338369|NZ_CP023573.1_338416-338434|NZ_CP023573.1_338510-338492|NZ_CP023573.1_363041-363023|NZ_CP023573.1_443333-443315|NZ_CP023573.1_546665-546647|NZ_CP023573.1_623855-623873|NZ_CP023573.1_624077-624095|NZ_CP023573.1_673830-673812|NZ_CP023573.1_840041-840059|NZ_CP023573.1_840087-840105|NZ_CP023573.1_1090857-1090875|NZ_CP023573.1_1091505-1091523|NZ_CP023573.1_1095551-1095533|NZ_CP023573.1_1212854-1212872|NZ_CP023573.1_1213244-1213262|NZ_CP023573.1_1217886-1217904|NZ_CP023573.1_1489062-1489044|NZ_CP023573.1_1618968-1618950|NZ_CP023573.1_1635891-1635873|NZ_CP023573.1_1635900-1635882|NZ_CP023573.1_1864140-1864122|NZ_CP023573.1_1864668-1864650|NZ_CP023573.1_1989922-1989904|NZ_CP023573.1_2001285-2001303|NZ_CP023573.1_2088643-2088625|NZ_CP023573.1_2303343-2303325|NZ_CP023573.1_2356795-2356777|NZ_CP023573.1_2419387-2419405|NZ_CP023573.1_2423474-2423456|NZ_CP023573.1_2568968-2568950|NZ_CP023573.1_2693267-2693285|NZ_CP023573.1_2795191-2795173|NZ_CP023573.1_2795773-2795755|NZ_CP023573.1_3054363-3054381|NZ_CP023573.1_3054462-3054480|NZ_CP023573.1_3705276-3705294|NZ_CP023573.1_3737253-3737235|NZ_CP023573.1_3737877-3737859|NZ_CP023573.1_3738120-3738102|NZ_CP023573.1_3738253-3738235|NZ_CP023573.1_3802115-3802133|NZ_CP023573.1_3802298-3802316|NZ_CP023573.1_3802466-3802484|NZ_CP023573.1_3930278-3930296|NZ_CP023573.1_3932008-3932026|NZ_CP023573.1_3940515-3940533|NZ_CP023573.1_3948510-3948528|NZ_CP023573.1_4031492-4031474|NZ_CP023573.1_4094014-4094032	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP023573.1_1207231_1207498_+,NA|61aa|down_3|NZ_CP023573.1_1215073_1215256_+,NA|35aa|down_4|NZ_CP023573.1_1215365_1215470_+	NA|465aa|up_9|NZ_CP023573.1_1201565_1202960_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP023573.1_1203161_1203884_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP023573.1_1203915_1205082_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP023573.1_1205152_1205647_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP023573.1_1205832_1206267_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP023573.1_1206368_1207235_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP023573.1_1207231_1207498_+	NA	NA|674aa|up_2|NZ_CP023573.1_1207484_1209506_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP023573.1_1209604_1210333_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP023573.1_1210443_1211232_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP023573.1_1213888_1214209_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP023573.1_1214361_1214796_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP023573.1_1214897_1215062_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP023573.1_1215073_1215256_+	NA	NA|35aa|down_4|NZ_CP023573.1_1215365_1215470_+	NA	NA|152aa|down_5|NZ_CP023573.1_1215447_1215903_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP023573.1_1216317_1218879_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP023573.1_1219096_1220035_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP023573.1_1220422_1221703_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP023573.1_1221807_1222635_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	6	1572038-1573110	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP023573.1_1563801_1564119_+,NA	NA|103aa|up_9|NZ_CP023573.1_1561316_1561625_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP023573.1_1561621_1563241_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP023573.1_1563801_1564119_+	NA	NA|209aa|up_6|NZ_CP023573.1_1564253_1564880_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP023573.1_1564945_1565278_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP023573.1_1565293_1566550_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP023573.1_1566677_1567889_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP023573.1_1567961_1569440_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP023573.1_1569436_1570822_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP023573.1_1570899_1571934_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP023573.1_1573964_1574366_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP023573.1_1574362_1574620_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP023573.1_1574702_1575662_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP023573.1_1575686_1576649_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP023573.1_1576782_1577385_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP023573.1_1577465_1579433_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP023573.1_1579450_1580275_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP023573.1_1580443_1580926_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP023573.1_1580997_1581822_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP023573.1_1582018_1582957_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	7	2088115-2088369	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088196-2088213|2088196-2088213|2088286-2088303	NZ_CP023573.1_401066-401049|NZ_CP023573.1_607310-607293|NZ_CP023573.1_3449976-3449959	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP023573.1_2087474_2087738_-,NA	NA|165aa|up_9|NZ_CP023573.1_2073768_2074263_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP023573.1_2074666_2075344_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP023573.1_2075702_2078528_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP023573.1_2078754_2079615_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP023573.1_2079655_2080522_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP023573.1_2080526_2082413_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP023573.1_2082428_2084462_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP023573.1_2084581_2086807_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP023573.1_2087082_2087478_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP023573.1_2087474_2087738_-	NA	NA|346aa|down_0|NZ_CP023573.1_2089506_2090544_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP023573.1_2090543_2091911_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP023573.1_2092084_2093521_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP023573.1_2093556_2095008_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP023573.1_2095037_2095988_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP023573.1_2096002_2096419_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP023573.1_2096696_2097119_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP023573.1_2097167_2097470_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP023573.1_2097466_2097781_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP023573.1_2097780_2099514_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	8	2163207-2163311	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP023573.1_2159751_2160159_-,NA|127aa|down_6|NZ_CP023573.1_2176380_2176761_-	NA|216aa|up_9|NZ_CP023573.1_2153065_2153713_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP023573.1_2153719_2155942_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP023573.1_2155979_2156423_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP023573.1_2156536_2157130_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP023573.1_2157212_2157818_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP023573.1_2157917_2158922_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP023573.1_2159021_2159774_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP023573.1_2159751_2160159_-	NA	NA|368aa|up_1|NZ_CP023573.1_2160293_2161397_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP023573.1_2161396_2162593_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP023573.1_2167479_2170443_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP023573.1_2170891_2171356_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP023573.1_2171453_2172317_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP023573.1_2172354_2173626_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP023573.1_2173897_2175013_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP023573.1_2175003_2176344_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP023573.1_2176380_2176761_-	NA	NA|621aa|down_7|NZ_CP023573.1_2176917_2178780_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP023573.1_2178787_2179267_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP023573.1_2179503_2180277_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	9	2168645-2168864	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP023573.1_2159751_2160159_-,NA|127aa|down_5|NZ_CP023573.1_2176380_2176761_-	NA|741aa|up_9|NZ_CP023573.1_2153719_2155942_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP023573.1_2155979_2156423_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP023573.1_2156536_2157130_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP023573.1_2157212_2157818_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP023573.1_2157917_2158922_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP023573.1_2159021_2159774_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP023573.1_2159751_2160159_-	NA	NA|368aa|up_2|NZ_CP023573.1_2160293_2161397_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP023573.1_2161396_2162593_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP023573.1_2162762_2167142_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP023573.1_2170891_2171356_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP023573.1_2171453_2172317_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP023573.1_2172354_2173626_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP023573.1_2173897_2175013_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP023573.1_2175003_2176344_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP023573.1_2176380_2176761_-	NA	NA|621aa|down_6|NZ_CP023573.1_2176917_2178780_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP023573.1_2178787_2179267_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP023573.1_2179503_2180277_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP023573.1_2180280_2181048_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	10	3118954-3120308	1,8,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP023573.1_3112233_3112488_-,NA|135aa|up_7|NZ_CP023573.1_3112635_3113040_+,NA|64aa|up_6|NZ_CP023573.1_3113036_3113228_+,NA|86aa|up_4|NZ_CP023573.1_3114814_3115072_+,NA|104aa|up_3|NZ_CP023573.1_3115176_3115488_+,NA|203aa|up_2|NZ_CP023573.1_3115907_3116516_+,NA	NA|92aa|up_9|NZ_CP023573.1_3111782_3112058_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP023573.1_3112233_3112488_-	NA	NA|135aa|up_7|NZ_CP023573.1_3112635_3113040_+	NA	NA|64aa|up_6|NZ_CP023573.1_3113036_3113228_+	NA	NA|385aa|up_5|NZ_CP023573.1_3113426_3114581_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP023573.1_3114814_3115072_+	NA	NA|104aa|up_3|NZ_CP023573.1_3115176_3115488_+	NA	NA|203aa|up_2|NZ_CP023573.1_3115907_3116516_+	NA	NA|470aa|up_1|NZ_CP023573.1_3116586_3117996_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP023573.1_3117992_3118805_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP023573.1_3120334_3121596_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP023573.1_3123393_3123735_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP023573.1_3123735_3124752_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP023573.1_3124764_3125913_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP023573.1_3126008_3127136_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP023573.1_3127132_3128041_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP023573.1_3128021_3128732_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP023573.1_3128741_3129116_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP023573.1_3129112_3131551_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP023573.1_3131547_3132270_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	11	3121631-3123345	9,4,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP023573.1_3112233_3112488_-,NA|135aa|up_8|NZ_CP023573.1_3112635_3113040_+,NA|64aa|up_7|NZ_CP023573.1_3113036_3113228_+,NA|86aa|up_5|NZ_CP023573.1_3114814_3115072_+,NA|104aa|up_4|NZ_CP023573.1_3115176_3115488_+,NA|203aa|up_3|NZ_CP023573.1_3115907_3116516_+,NA	NA|85aa|up_9|NZ_CP023573.1_3112233_3112488_-	NA	NA|135aa|up_8|NZ_CP023573.1_3112635_3113040_+	NA	NA|64aa|up_7|NZ_CP023573.1_3113036_3113228_+	NA	NA|385aa|up_6|NZ_CP023573.1_3113426_3114581_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP023573.1_3114814_3115072_+	NA	NA|104aa|up_4|NZ_CP023573.1_3115176_3115488_+	NA	NA|203aa|up_3|NZ_CP023573.1_3115907_3116516_+	NA	NA|470aa|up_2|NZ_CP023573.1_3116586_3117996_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP023573.1_3117992_3118805_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP023573.1_3120334_3121596_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP023573.1_3123393_3123735_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP023573.1_3123735_3124752_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP023573.1_3124764_3125913_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP023573.1_3126008_3127136_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP023573.1_3127132_3128041_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP023573.1_3128021_3128732_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP023573.1_3128741_3129116_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP023573.1_3129112_3131551_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP023573.1_3131547_3132270_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP023573.1_3132669_3133215_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	12	3740447-3740988	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP023573.1_3755089_3755377_-,NA|87aa|down_9|NZ_CP023573.1_3768497_3768758_-	NA|282aa|up_9|NZ_CP023573.1_3719698_3720544_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP023573.1_3721018_3721459_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP023573.1_3721492_3722362_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP023573.1_3722382_3723393_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP023573.1_3723677_3724310_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP023573.1_3724376_3725606_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP023573.1_3725888_3727238_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP023573.1_3727249_3728389_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP023573.1_3728385_3729117_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP023573.1_3729125_3736697_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP023573.1_3742959_3743217_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP023573.1_3743472_3752946_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP023573.1_3753571_3754018_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP023573.1_3754054_3754795_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP023573.1_3755089_3755377_-	NA	NA|3717aa|down_5|NZ_CP023573.1_3755713_3766864_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP023573.1_3767107_3767902_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP023573.1_3767983_3768355_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP023573.1_3768252_3768471_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP023573.1_3768497_3768758_-	NA
GCF_002446875.1_ASM244687v1	NZ_CP023573	Mycobacterium tuberculosis strain CSV4519 chromosome, complete genome	13	4110431-4110519	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP023573.1_4101017_4101788_-,NA|119aa|up_3|NZ_CP023573.1_4106922_4107279_+,NA|52aa|up_2|NZ_CP023573.1_4107378_4107534_+,NA|233aa|up_0|NZ_CP023573.1_4109535_4110234_-,NA|126aa|down_6|NZ_CP023573.1_4115754_4116132_+	NA|288aa|up_9|NZ_CP023573.1_4099399_4100263_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP023573.1_4101017_4101788_-	NA	NA|549aa|up_7|NZ_CP023573.1_4101784_4103431_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP023573.1_4103427_4104291_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP023573.1_4104283_4105210_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP023573.1_4105211_4106837_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP023573.1_4106922_4107279_+	NA	NA|52aa|up_2|NZ_CP023573.1_4107378_4107534_+	NA	NA|652aa|up_1|NZ_CP023573.1_4107544_4109500_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP023573.1_4109535_4110234_-	NA	NA|173aa|down_0|NZ_CP023573.1_4110579_4111098_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP023573.1_4111098_4112082_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP023573.1_4112074_4113268_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP023573.1_4113273_4114095_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP023573.1_4114226_4114910_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP023573.1_4114909_4115647_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP023573.1_4115754_4116132_+	NA	NA|225aa|down_7|NZ_CP023573.1_4116230_4116905_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP023573.1_4117010_4117805_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP023573.1_4117811_4118267_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
