The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	1236154	1251994	2941886		Staphylococcus_phage(92.31%)	17	NA	NA
WP_096809045.1|1236154_1237543_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	60.1	1.1e-167
WP_096809047.1|1237556_1238561_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.6	2.3e-87
WP_096809049.1|1238557_1238794_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	73.5	1.0e-30
WP_096809051.1|1238856_1239339_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	55.6	2.6e-44
WP_096811205.1|1239346_1240114_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	68.2	1.3e-95
WP_096809053.1|1242094_1243684_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	4.7e-260
WP_096809055.1|1244063_1245260_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.1	4.1e-192
WP_096809057.1|1245355_1246264_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.1	4.2e-88
WP_096809059.1|1246559_1247396_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	70.4	1.3e-112
WP_096809060.1|1247476_1247833_-	CrcB family protein	NA	NA	NA	NA	NA
WP_096809062.1|1247829_1248195_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	58.7	2.4e-34
WP_096809063.1|1248255_1248561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096809065.1|1248848_1249562_+	transaldolase	NA	E3SKN5	Synechococcus_phage	34.4	4.2e-19
WP_096809067.1|1249858_1250491_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_096809068.1|1250625_1251075_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	46.1	6.3e-21
WP_096809071.1|1251082_1251505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096809072.1|1251520_1251994_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.3	7.9e-22
>prophage 2
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	1255068	1261835	2941886		Staphylococcus_phage(100.0%)	6	NA	NA
WP_096809078.1|1255068_1256550_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	67.3	1.5e-13
WP_096809080.1|1257232_1258276_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.7	6.2e-128
WP_096809082.1|1258282_1258915_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.0	2.0e-68
WP_096809084.1|1258925_1260107_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	71.8	1.7e-166
WP_096809086.1|1260118_1260577_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	1.5e-57
WP_096809088.1|1260833_1261835_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	65.8	3.4e-123
>prophage 3
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	1265125	1272825	2941886	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_096809097.1|1265125_1265686_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	68.1	8.3e-71
WP_096809098.1|1265682_1266636_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	8.6e-68
WP_096809100.1|1266745_1267915_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	76.9	1.1e-165
WP_096809102.1|1268302_1270717_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	86.2	0.0e+00
WP_096809103.1|1270738_1271050_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	3.7e-36
WP_096809105.1|1271565_1272825_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	74.0	4.2e-38
>prophage 4
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	1401717	1410822	2941886	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_096809312.1|1401717_1402719_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	5.8e-06
WP_096809314.1|1402721_1403747_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_096809316.1|1403767_1404907_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	7.1e-85
WP_019468514.1|1404925_1405186_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	4.3e-06
WP_096809318.1|1405504_1407781_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	32.9	6.5e-29
WP_096809320.1|1408011_1410288_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	8.4e-69
WP_096809322.1|1410303_1410822_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.9	3.9e-30
>prophage 5
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	1876440	1934379	2941886	portal,plate,tRNA,protease,terminase,head,tail,capsid	Staphylococcus_phage(56.6%)	77	NA	NA
WP_096810179.1|1876440_1877373_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	28.9	4.0e-09
WP_096810184.1|1877365_1877854_-	peptide deformylase	NA	NA	NA	NA	NA
WP_096810190.1|1878565_1879255_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_157772548.1|1879476_1879620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810192.1|1879784_1881059_-	amidohydrolase	NA	NA	NA	NA	NA
WP_096810193.1|1881071_1882586_-	AbgT family transporter	NA	NA	NA	NA	NA
WP_096810195.1|1882647_1884090_-	amidohydrolase	NA	NA	NA	NA	NA
WP_096810197.1|1884521_1884719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810200.1|1884989_1885460_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_096810201.1|1885771_1885963_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	81.7	4.4e-24
WP_096810203.1|1886080_1886263_-	CsbD family protein	NA	NA	NA	NA	NA
WP_096811223.1|1887557_1888331_-	acetoin reductase	NA	NA	NA	NA	NA
WP_096810205.1|1889072_1889324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810207.1|1889295_1889682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810209.1|1889685_1889988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810211.1|1890214_1891825_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	5.8e-24
WP_096810213.1|1892785_1894177_-	CHAP domain-containing protein	NA	Q5NTY4	Staphylococcus_phage	33.1	2.3e-69
WP_096810215.1|1894188_1894500_-	hypothetical protein	NA	A0A0D4DCQ8	Staphylococcus_phage	66.7	4.2e-24
WP_157772549.1|1894552_1894861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096811224.1|1894900_1895104_-	XkdX family protein	NA	A0A2H4JI51	uncultured_Caudovirales_phage	68.9	2.8e-16
WP_096810219.1|1895324_1896563_-|plate	BppU family phage baseplate upper protein	plate	A0A2H4JGG5	uncultured_Caudovirales_phage	91.5	2.8e-159
WP_096810222.1|1896574_1898236_-	hypothetical protein	NA	A0A2H4JHN3	uncultured_Caudovirales_phage	93.3	1.2e-287
WP_096810223.1|1898232_1898595_-	hypothetical protein	NA	A0A2H4JCK2	uncultured_Caudovirales_phage	81.5	3.7e-19
WP_096810225.1|1898587_1900177_-	peptidase	NA	A0A2H4J5K5	uncultured_Caudovirales_phage	88.6	1.0e-278
WP_096810227.1|1900186_1901023_-|tail	phage tail family protein	tail	A0A1W6JQE9	Staphylococcus_phage	72.3	9.5e-95
WP_096810229.1|1901025_1908006_-|tail	phage tail tape measure protein	tail	Q8LTH9	Staphylococcus_phage	37.6	1.1e-196
WP_096810231.1|1908234_1908585_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	57.8	2.7e-27
WP_096810232.1|1908652_1909183_-	Ig domain-containing protein	NA	A0A1D6Z291	Staphylococcus_phage	60.1	2.0e-42
WP_096810234.1|1909279_1909909_-|tail	phage tail protein	tail	A0A2K9VBP7	Staphylococcus_phage	60.1	1.5e-60
WP_065865682.1|1909941_1910337_-	hypothetical protein	NA	A0A0K1LKC0	Staphylococcus_phage	63.4	1.6e-39
WP_046100246.1|1910333_1910759_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	58.9	3.0e-36
WP_157772550.1|1910751_1910907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810236.1|1910906_1911086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046100244.1|1911091_1911379_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	56.7	1.1e-21
WP_046100243.1|1911451_1912618_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	80.1	1.2e-175
WP_046100242.1|1912630_1913398_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	69.3	4.3e-94
WP_096810238.1|1913348_1914620_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	76.6	4.2e-187
WP_017722722.1|1914623_1916318_-|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	75.1	1.4e-262
WP_017722721.1|1916307_1916616_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	79.4	6.7e-38
WP_082080590.1|1916715_1917075_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	59.6	1.2e-22
WP_096810240.1|1917599_1918085_-	hypothetical protein	NA	A0A1W6JPQ7	Staphylococcus_phage	70.5	5.9e-49
WP_096810241.1|1918406_1918541_-	transcriptional regulator	NA	A0A2H4JAX0	uncultured_Caudovirales_phage	68.3	1.7e-06
WP_096810246.1|1918774_1919029_-	DUF1381 domain-containing protein	NA	A0A2H4J5P5	uncultured_Caudovirales_phage	61.5	4.2e-22
WP_096810248.1|1919029_1919263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810249.1|1919312_1919516_-	hypothetical protein	NA	A0A0D3MVJ6	Staphylococcus_phage	81.8	6.8e-23
WP_096810252.1|1919552_1920137_-	dUTP pyrophosphatase	NA	A0A1W6JQ84	Staphylococcus_phage	93.6	3.9e-87
WP_096810254.1|1920129_1920360_-	hypothetical protein	NA	A0A2H4JHN5	uncultured_Caudovirales_phage	46.8	1.8e-08
WP_157772551.1|1920349_1920493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810256.1|1920493_1920772_-	hypothetical protein	NA	A0A1W6JQ72	Staphylococcus_phage	87.2	3.5e-30
WP_096810259.1|1920778_1921159_-	hypothetical protein	NA	Q4ZC86	Staphylococcus_virus	46.9	1.3e-22
WP_096810261.1|1921251_1921641_-	hypothetical protein	NA	I1W655	Staphylococcus_phage	44.2	1.0e-19
WP_096810263.1|1921627_1921834_-	hypothetical protein	NA	A0A2H4JAZ1	uncultured_Caudovirales_phage	84.4	9.6e-25
WP_046466073.1|1921830_1922136_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	97.0	1.4e-48
WP_096811225.1|1922136_1922604_-	DUF3310 domain-containing protein	NA	A0A2H4J984	uncultured_Caudovirales_phage	54.6	5.2e-42
WP_096810265.1|1922679_1923027_-	hypothetical protein	NA	A0A1W6JQ77	Staphylococcus_phage	38.1	9.9e-14
WP_096810267.1|1923037_1923235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810269.1|1923239_1923644_-	DUF1064 domain-containing protein	NA	A0A2H4J5N5	uncultured_Caudovirales_phage	73.7	4.0e-51
WP_096810271.1|1923655_1923868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810275.1|1924035_1924809_-	ATP-binding protein	NA	A0A1W6JNQ7	Staphylococcus_phage	84.1	5.3e-108
WP_096810277.1|1924819_1925575_-	replication protein	NA	A0A1W6JQ30	Staphylococcus_phage	55.6	3.2e-49
WP_096810279.1|1925561_1926239_-	hypothetical protein	NA	A0A1X9H044	Staphylococcus_phage	70.0	1.1e-90
WP_096810281.1|1926250_1926805_-	single-stranded DNA-binding protein	NA	Q9G027	Staphylococcus_virus	79.3	7.4e-80
WP_096810284.1|1926882_1927098_+	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
WP_096811226.1|1927107_1927263_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	66.0	1.7e-13
WP_096810285.1|1927249_1927444_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	60.0	3.5e-08
WP_096810287.1|1927457_1928225_-	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	75.5	4.0e-108
WP_096810289.1|1928217_1928478_-	hypothetical protein	NA	U3PCY6	Staphylococcus_phage	96.5	2.1e-40
WP_157772552.1|1928539_1928716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810291.1|1928728_1928992_-	helix-turn-helix domain-containing protein	NA	B7T0G2	Staphylococcus_virus	57.6	3.5e-19
WP_096810293.1|1929081_1929393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810295.1|1929381_1929633_-	DUF2829 domain-containing protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	59.2	8.1e-18
WP_096810297.1|1929644_1930406_-	Rha family transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	63.2	3.6e-77
WP_096810299.1|1930418_1930667_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	72.7	4.3e-27
WP_096810301.1|1930831_1931578_+	helix-turn-helix transcriptional regulator	NA	Q9G039	Staphylococcus_virus	55.4	1.2e-64
WP_096810304.1|1931855_1932635_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	55.9	3.7e-08
WP_157772553.1|1933078_1933249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810306.1|1933431_1934379_+	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	56.0	7.2e-91
>prophage 6
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	2064999	2073475	2941886		Synechococcus_phage(33.33%)	9	NA	NA
WP_096810420.1|2064999_2065566_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.1	4.2e-30
WP_096810421.1|2065568_2066597_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.8	4.3e-65
WP_096810422.1|2066589_2068077_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.9e-45
WP_096810423.1|2068055_2070245_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	38.9	1.8e-137
WP_096810424.1|2070237_2070909_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_096810425.1|2070908_2071169_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_096810426.1|2071171_2071873_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	41.2	8.9e-46
WP_096810427.1|2071872_2073006_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_096810428.1|2072992_2073475_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.0e-20
>prophage 7
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	2222787	2266668	2941886	portal,plate,protease,integrase,terminase,tail,capsid	Staphylococcus_phage(48.15%)	61	2227234:2227252	2273627:2273645
WP_096810547.1|2222787_2224521_-	CHAP domain-containing protein	NA	A0A1W6JQL2	Staphylococcus_phage	69.4	7.9e-245
WP_096810548.1|2224520_2224817_-	hypothetical protein	NA	A0A0D4DCQ8	Staphylococcus_phage	69.7	6.2e-25
WP_157772549.1|2224869_2225178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096811233.1|2225217_2225421_-	XkdX family protein	NA	A0A2H4JI51	uncultured_Caudovirales_phage	80.3	2.8e-21
WP_096810549.1|2225641_2226880_-|plate	BppU family phage baseplate upper protein	plate	A0A2H4JGG5	uncultured_Caudovirales_phage	90.5	9.2e-155
WP_096810550.1|2226891_2228553_-	hypothetical protein	NA	A0A2H4JHN3	uncultured_Caudovirales_phage	94.6	7.0e-291
2227234:2227252	attL	ATCATTCATTGTTAATTTA	NA	NA	NA	NA
WP_096810551.1|2228549_2228912_-	hypothetical protein	NA	A0A2H4JCK2	uncultured_Caudovirales_phage	81.5	2.1e-19
WP_096810552.1|2228904_2230491_-	peptidase	NA	A0A2H4J5K5	uncultured_Caudovirales_phage	71.8	9.2e-224
WP_096810553.1|2230500_2231337_-|tail	phage tail family protein	tail	A0A2H4J7E0	uncultured_Caudovirales_phage	56.9	7.8e-81
WP_096810554.1|2231350_2231749_-	hypothetical protein	NA	A0A0K1LKC4	Staphylococcus_phage	44.8	8.1e-20
WP_096810555.1|2231776_2238334_-|tail	phage tail tape measure protein	tail	Q8LTH9	Staphylococcus_phage	36.6	1.9e-161
WP_096810557.1|2238562_2238913_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	56.0	4.6e-27
WP_096810558.1|2238980_2239511_-	Ig domain-containing protein	NA	A0A1D6Z291	Staphylococcus_phage	60.8	9.1e-43
WP_096810559.1|2239607_2240237_-|tail	phage tail protein	tail	A0A2K9VBP7	Staphylococcus_phage	59.0	2.8e-59
WP_065865682.1|2240270_2240666_-	hypothetical protein	NA	A0A0K1LKC0	Staphylococcus_phage	63.4	1.6e-39
WP_096810560.1|2240662_2241088_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	58.1	1.5e-35
WP_096810561.1|2241084_2241447_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	47.5	7.9e-22
WP_096810562.1|2241433_2241715_-	hypothetical protein	NA	A0A2H4J447	uncultured_Caudovirales_phage	51.1	2.7e-17
WP_096810563.1|2241810_2243010_-|capsid	phage major capsid protein	capsid	Q4ZD74	Staphylococcus_phage	46.1	6.8e-86
WP_096810564.1|2243022_2243751_-|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	54.0	3.4e-48
WP_096810565.1|2243713_2244898_-|portal	phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	47.6	3.9e-102
WP_096810566.1|2244913_2246584_-|terminase	terminase large subunit	terminase	A8AT95	Listeria_phage	60.2	1.7e-199
WP_096811234.1|2246580_2246922_-	hypothetical protein	NA	A0A2H4JAH7	uncultured_Caudovirales_phage	60.2	3.7e-29
WP_096810567.1|2247115_2247451_-	HNH endonuclease	NA	D2XR61	Bacillus_phage	55.5	3.2e-25
WP_096810568.1|2247691_2248117_-	hypothetical protein	NA	Q4ZD23	Staphylococcus_phage	53.9	2.3e-33
WP_096810569.1|2248175_2248424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810570.1|2248425_2248731_-	DUF5052 family protein	NA	S4UCP8	Listeria_phage	67.7	4.3e-29
WP_157772554.1|2248743_2248893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810571.1|2248893_2249124_-	DUF1381 domain-containing protein	NA	A0A2H4JGT2	uncultured_Caudovirales_phage	73.7	1.0e-19
WP_096810572.1|2249123_2249489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810249.1|2249538_2249742_-	hypothetical protein	NA	A0A0D3MVJ6	Staphylococcus_phage	81.8	6.8e-23
WP_096810252.1|2249778_2250363_-	dUTP pyrophosphatase	NA	A0A1W6JQ84	Staphylococcus_phage	93.6	3.9e-87
WP_096810573.1|2250355_2250586_-	hypothetical protein	NA	A0A2H4JHN5	uncultured_Caudovirales_phage	44.2	5.9e-07
WP_096810574.1|2250575_2250821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810575.1|2250942_2251419_-	hypothetical protein	NA	A0A2H4JCS1	uncultured_Caudovirales_phage	56.9	6.7e-05
WP_096810576.1|2251425_2251815_-	hypothetical protein	NA	A0A286QNB5	Streptococcus_phage	37.5	5.7e-10
WP_096810577.1|2251907_2252315_-	hypothetical protein	NA	U3PBR0	Staphylococcus_phage	41.0	3.3e-16
WP_157772555.1|2252308_2252509_-	hypothetical protein	NA	A0A1W6JQ49	Staphylococcus_phage	79.7	1.5e-22
WP_096810579.1|2252508_2253024_-	DUF3310 domain-containing protein	NA	A0A2H4JC86	uncultured_Caudovirales_phage	57.3	2.2e-65
WP_096810580.1|2253024_2253378_-	hypothetical protein	NA	A0A1W6JQ77	Staphylococcus_phage	74.1	4.5e-46
WP_096810581.1|2253379_2253568_-	hypothetical protein	NA	A0A1W6JQ89	Staphylococcus_phage	93.5	8.5e-28
WP_096810582.1|2253560_2253971_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1D6Z252	Staphylococcus_phage	71.7	7.5e-45
WP_096810583.1|2253981_2254200_-	hypothetical protein	NA	A0A1W6JPS2	Staphylococcus_phage	66.7	1.2e-22
WP_096810585.1|2254355_2255129_-	ATP-binding protein	NA	A0A1W6JP70	Staphylococcus_phage	83.2	1.1e-108
WP_096810586.1|2255139_2255907_-	DnaD domain protein	NA	A0A2H4JAS0	uncultured_Caudovirales_phage	66.7	7.2e-57
WP_096810587.1|2255893_2256574_-	hypothetical protein	NA	U3PDZ6	Staphylococcus_phage	92.8	3.8e-118
WP_096810588.1|2256602_2257037_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	72.1	1.2e-53
WP_096810589.1|2257036_2257687_-	single-stranded DNA-binding protein	NA	A0A2H4J5X9	uncultured_Caudovirales_phage	75.1	8.2e-86
WP_096810590.1|2257679_2257934_-	hypothetical protein	NA	A0A2H4J1Y9	uncultured_Caudovirales_phage	67.9	4.5e-24
WP_096810591.1|2258185_2258395_-	hypothetical protein	NA	A0A2H4J149	uncultured_Caudovirales_phage	47.8	3.3e-12
WP_096810592.1|2258458_2258728_+	hypothetical protein	NA	A0A1J0MFQ1	Staphylococcus_phage	79.8	3.5e-35
WP_096810593.1|2258858_2259110_-	DUF2829 domain-containing protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	59.2	1.1e-17
WP_096810594.1|2259121_2259331_-	pathogenicity island protein	NA	Q4ZCA9	Staphylococcus_virus	49.3	2.8e-08
WP_096810595.1|2259342_2260101_-	Rha family transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	62.8	5.6e-78
WP_096810596.1|2260118_2260343_-	helix-turn-helix transcriptional regulator	NA	Q9MBT3	Staphylococcus_prophage	74.0	6.1e-25
WP_096810597.1|2260509_2261232_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	50.6	1.2e-58
WP_096810598.1|2261506_2262256_+	hypothetical protein	NA	Q4ZCY3	Staphylococcus_virus	53.4	9.6e-22
WP_096810599.1|2262318_2263377_+|integrase	site-specific integrase	integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	77.6	2.9e-157
WP_096810600.1|2263445_2264843_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_096810601.1|2264981_2265431_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_096810602.1|2265420_2266668_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	46.0	2.0e-109
2273627:2273645	attR	TAAATTAACAATGAATGAT	NA	NA	NA	NA
>prophage 8
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	2369035	2389343	2941886		uncultured_Caudovirales_phage(35.71%)	16	NA	NA
WP_096810698.1|2369035_2369836_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.3	6.0e-14
WP_096810699.1|2369832_2370792_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	52.0	3.6e-05
WP_096810700.1|2370781_2371750_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.5	6.8e-137
WP_096810701.1|2371987_2372956_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	93.5	4.1e-174
WP_096810702.1|2373193_2375299_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.0	0.0e+00
WP_096810703.1|2375261_2375660_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	73.5	2.8e-52
WP_096810704.1|2376363_2377251_+	DMT family transporter	NA	NA	NA	NA	NA
WP_096810705.1|2377264_2377765_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	4.1e-53
WP_096810706.1|2378181_2379696_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.4	1.8e-72
WP_096810707.1|2379996_2381505_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	33.6	6.1e-68
WP_096810708.1|2381642_2382584_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	25.5	1.1e-11
WP_096810709.1|2382774_2383323_-	5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.2	6.5e-28
WP_096810710.1|2383551_2384607_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.9	5.5e-23
WP_096810711.1|2384800_2386315_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_096810712.1|2386311_2387274_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.4e-25
WP_096810713.1|2387564_2389343_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	38.5	9.1e-79
>prophage 9
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2941886	2398310	2405692	2941886		Pandoravirus(14.29%)	9	NA	NA
WP_096810721.1|2398310_2399399_-	anthranilate synthase component I family protein	NA	S4VT78	Pandoravirus	34.5	2.3e-24
WP_096810722.1|2399382_2399976_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.0	6.6e-34
WP_096810723.1|2400222_2400894_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.2	1.7e-65
WP_096810724.1|2400895_2401321_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	25.2	6.4e-07
WP_096810725.1|2401313_2402030_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	45.4	2.5e-51
WP_096810726.1|2402274_2402868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096810727.1|2402929_2403184_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_096810728.1|2403242_2404334_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.2	4.2e-58
WP_096810729.1|2404852_2405692_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.6	1.1e-61
>prophage 1
NZ_CP017468	Staphylococcus nepalensis strain JS11 plasmid pSNJS1102, complete sequence	25678	3716	24569	25678	tail,plate	Staphylococcus_phage(60.0%)	17	NA	NA
WP_096810211.1|3716_5327_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	5.8e-24
WP_096810213.1|6287_7679_-	CHAP domain-containing protein	NA	Q5NTY4	Staphylococcus_phage	33.1	2.3e-69
WP_096810215.1|7690_8002_-	hypothetical protein	NA	A0A0D4DCQ8	Staphylococcus_phage	66.7	4.2e-24
WP_157772549.1|8054_8363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096811224.1|8402_8606_-	XkdX family protein	NA	A0A2H4JI51	uncultured_Caudovirales_phage	68.9	2.8e-16
WP_096810219.1|8826_10065_-|plate	BppU family phage baseplate upper protein	plate	A0A2H4JGG5	uncultured_Caudovirales_phage	91.5	2.8e-159
WP_096810222.1|10076_11738_-	hypothetical protein	NA	A0A2H4JHN3	uncultured_Caudovirales_phage	93.3	1.2e-287
WP_096810223.1|11734_12097_-	hypothetical protein	NA	A0A2H4JCK2	uncultured_Caudovirales_phage	81.5	3.7e-19
WP_096810225.1|12089_13679_-	peptidase	NA	A0A2H4J5K5	uncultured_Caudovirales_phage	88.6	1.0e-278
WP_157772565.1|14528_15086_-	transglycosylase SLT domain-containing protein	NA	R4WAN6	Staphylococcus_phage	44.5	1.9e-30
WP_096811283.1|15061_21490_-|tail	phage tail tape measure protein	tail	Q8LTH9	Staphylococcus_phage	37.3	7.4e-163
WP_096810231.1|21718_22069_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	57.8	2.7e-27
WP_096810232.1|22136_22667_-	Ig domain-containing protein	NA	A0A1D6Z291	Staphylococcus_phage	60.1	2.0e-42
WP_065865682.1|23424_23820_-	hypothetical protein	NA	A0A0K1LKC0	Staphylococcus_phage	63.4	1.6e-39
WP_046100246.1|23816_24242_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	58.9	3.0e-36
WP_157772550.1|24234_24390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096810236.1|24389_24569_-	hypothetical protein	NA	A0A2I6PEH8	Staphylococcus_phage	37.3	1.5e-05
