assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002442895.1_ASM244289v1	NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	1	1115998-1116142	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	ACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTT	53	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG,cas14k	NA,NA|61aa|down_6|NZ_CP017460.1_1122840_1123023_+,NA|138aa|down_7|NZ_CP017460.1_1123226_1123640_+	NA|511aa|up_9|NZ_CP017460.1_1096351_1097884_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|326aa|up_8|NZ_CP017460.1_1098854_1099832_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|349aa|up_7|NZ_CP017460.1_1099955_1101002_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|181aa|up_6|NZ_CP017460.1_1101068_1101611_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|579aa|up_5|NZ_CP017460.1_1101809_1103546_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|365aa|up_4|NZ_CP017460.1_1103649_1104744_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|430aa|up_3|NZ_CP017460.1_1104819_1106109_-	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|152aa|up_2|NZ_CP017460.1_1106191_1106647_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|317aa|up_1|NZ_CP017460.1_1106653_1107604_+	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|151aa|up_0|NZ_CP017460.1_1107698_1108151_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|356aa|down_0|NZ_CP017460.1_1116775_1117843_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|488aa|down_1|NZ_CP017460.1_1118089_1119553_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|down_2|NZ_CP017460.1_1119545_1120268_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|376aa|down_3|NZ_CP017460.1_1120432_1121560_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|157aa|down_4|NZ_CP017460.1_1121564_1122035_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|200aa|down_5|NZ_CP017460.1_1122217_1122817_+	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|61aa|down_6|NZ_CP017460.1_1122840_1123023_+	NA	NA|138aa|down_7|NZ_CP017460.1_1123226_1123640_+	NA	NA|462aa|down_8|NZ_CP017460.1_1123850_1125236_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|276aa|down_9|NZ_CP017460.1_1125495_1126323_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
GCF_002442895.1_ASM244289v1	NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	2	1182047-1182130	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TTGTGAAATAAATCACAATAAACGAT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG,cas14k	NA|75aa|up_8|NZ_CP017460.1_1171116_1171341_+,NA	NA|158aa|up_9|NZ_CP017460.1_1170420_1170894_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|75aa|up_8|NZ_CP017460.1_1171116_1171341_+	NA	NA|285aa|up_7|NZ_CP017460.1_1171504_1172359_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|494aa|up_6|NZ_CP017460.1_1173968_1175450_+	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	NA|348aa|up_5|NZ_CP017460.1_1176132_1177176_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|211aa|up_4|NZ_CP017460.1_1177182_1177815_+	PRK09289, PRK09289, riboflavin synthase	NA|394aa|up_3|NZ_CP017460.1_1177825_1179007_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|153aa|up_2|NZ_CP017460.1_1179018_1179477_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|334aa|up_1|NZ_CP017460.1_1179733_1180735_-	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|275aa|up_0|NZ_CP017460.1_1181003_1181828_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|319aa|down_0|NZ_CP017460.1_1182161_1183118_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|134aa|down_1|NZ_CP017460.1_1183267_1183669_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|187aa|down_2|NZ_CP017460.1_1184025_1184586_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|down_3|NZ_CP017460.1_1184582_1185536_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|390aa|down_4|NZ_CP017460.1_1185645_1186815_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|down_5|NZ_CP017460.1_1187202_1189617_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|down_6|NZ_CP017460.1_1189638_1189950_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|420aa|down_7|NZ_CP017460.1_1190465_1191725_-	pfam03486, HI0933_like, HI0933-like protein	NA|546aa|down_8|NZ_CP017460.1_1191854_1193492_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|234aa|down_9|NZ_CP017460.1_1193488_1194190_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
GCF_002442895.1_ASM244289v1	NZ_CP017460	Staphylococcus nepalensis strain JS1 chromosome, complete genome	3	1641865-1641968	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TGTTGTTGTGTCGTCTGTAGGCTCTTGTGTGC	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG,cas14k	NA|62aa|up_8|NZ_CP017460.1_1632661_1632847_-,NA|58aa|up_7|NZ_CP017460.1_1633561_1633735_-,NA|174aa|up_6|NZ_CP017460.1_1634411_1634933_-,NA|171aa|up_5|NZ_CP017460.1_1635073_1635586_-,NA|105aa|up_1|NZ_CP017460.1_1638899_1639214_-,NA|60aa|up_0|NZ_CP017460.1_1639262_1639442_-,NA|92aa|down_2|NZ_CP017460.1_1651302_1651578_-,NA|171aa|down_3|NZ_CP017460.1_1651637_1652150_-,NA|115aa|down_7|NZ_CP017460.1_1654117_1654462_-,NA|127aa|down_8|NZ_CP017460.1_1654458_1654839_-,NA|96aa|down_9|NZ_CP017460.1_1654849_1655137_-	NA|156aa|up_9|NZ_CP017460.1_1631927_1632395_-	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|62aa|up_8|NZ_CP017460.1_1632661_1632847_-	NA	NA|58aa|up_7|NZ_CP017460.1_1633561_1633735_-	NA	NA|174aa|up_6|NZ_CP017460.1_1634411_1634933_-	NA	NA|171aa|up_5|NZ_CP017460.1_1635073_1635586_-	NA	NA|571aa|up_4|NZ_CP017460.1_1636192_1637905_-	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|101aa|up_3|NZ_CP017460.1_1637970_1638273_-	pfam06946, Phage_holin_5_1, Bacteriophage A118-like holin, Hol118	NA|136aa|up_2|NZ_CP017460.1_1638429_1638837_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|105aa|up_1|NZ_CP017460.1_1638899_1639214_-	NA	NA|60aa|up_0|NZ_CP017460.1_1639262_1639442_-	NA	NA|495aa|down_0|NZ_CP017460.1_1644433_1645918_-	TIGR01633, unnamed_protein_product, putative phage tail component, N-terminal domain	NA|1777aa|down_1|NZ_CP017460.1_1645932_1651263_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|92aa|down_2|NZ_CP017460.1_1651302_1651578_-	NA	NA|171aa|down_3|NZ_CP017460.1_1651637_1652150_-	NA	NA|318aa|down_4|NZ_CP017460.1_1652244_1653198_-	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	NA|137aa|down_5|NZ_CP017460.1_1653235_1653646_-	pfam12691, Minor_capsid_3, Minor capsid protein from bacteriophage	NA|160aa|down_6|NZ_CP017460.1_1653648_1654128_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|115aa|down_7|NZ_CP017460.1_1654117_1654462_-	NA	NA|127aa|down_8|NZ_CP017460.1_1654458_1654839_-	NA	NA|96aa|down_9|NZ_CP017460.1_1654849_1655137_-	NA
